diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 56 |
1 files changed, 28 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bdedeabede..befc2a9420 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -748,34 +748,6 @@ annotations.") "This is a manifest package for Illumina's EPIC methylation arrays.") (license license:artistic2.0))) -;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19 -;; from Bioconductor. -(define-public r-deconstructsigs - (package - (name "r-deconstructsigs") - (version "1.8.0") - (source (origin - (method url-fetch) - (uri (cran-uri "deconstructSigs" version)) - (sha256 - (base32 - "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a")))) - (properties - `((upstream-name . "deconstructSigs"))) - (build-system r-build-system) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome) - ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-reshape2" ,r-reshape2))) - (home-page "https://github.com/raerose01/deconstructSigs") - (synopsis "Identifies signatures present in a tumor sample") - (description "This package takes sample information in the form of the -fraction of mutations in each of 96 trinucleotide contexts and identifies -the weighted combination of published signatures that, when summed, most -closely reconstructs the mutational profile.") - (license license:gpl2+))) - ;; This is a CRAN package, but it depends on Bioconductor packages. (define-public r-nmf (package @@ -1289,6 +1261,34 @@ and evaluate clustering results.") arbitrary genomic intervals along chromosomal ideogram.") (license license:gpl2))) +;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19 +;; from Bioconductor. +(define-public r-deconstructsigs + (package + (name "r-deconstructsigs") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (cran-uri "deconstructSigs" version)) + (sha256 + (base32 + "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a")))) + (properties + `((upstream-name . "deconstructSigs"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome) + ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-reshape2" ,r-reshape2))) + (home-page "https://github.com/raerose01/deconstructSigs") + (synopsis "Identifies signatures present in a tumor sample") + (description "This package takes sample information in the form of the +fraction of mutations in each of 96 trinucleotide contexts and identifies +the weighted combination of published signatures that, when summed, most +closely reconstructs the mutational profile.") + (license license:gpl2+))) + (define-public r-affycomp (package (name "r-affycomp") |