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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 511431fb95..c032d107cd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6046,6 +6046,43 @@ resolution of binding sites through combining the information of both sequencing tag position and orientation.") (license license:bsd-3))) +(define-public maffilter + (package + (name "maffilter") + (version "1.3.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jydu/maffilter") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "196c16qw82niqqyzi7j1ga1n0zmir73bm26kg04m0i5aq2cpa0ml")))) + (build-system cmake-build-system) + (arguments (list #:tests? #false)) ;there are none + (inputs + (list boost + bpp-core + bpp-phyl + bpp-phyl-omics + bpp-seq + bpp-seq-omics + zlib)) + (home-page "https://jydu.github.io/maffilter/") + (synopsis "Multiple alignment format file processor") + (description + "MafFilter is a program dedicated to the analysis of genome alignments. +It parses and manipulates @acronym{MAF, multiple alignment format} files as +well as more simple fasta files. This package can be used to design a +pipeline as a series of consecutive filters, each performing a dedicated +analysis. Many of the filters are available, from alignment cleaning to +phylogeny reconstruction and population genetics analysis. Despite various +filtering options and format conversion tools, MafFilter can compute a wide +range of statistics (phylogenetic trees, nucleotide diversity, inferrence of +selection, etc.).") + (license license:gpl3+))) + (define-public mafft (package (name "mafft") |