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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f59f37b52b..9342c44474 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -687,6 +687,59 @@ and utilities for PacBio C++ applications.") suite native in R.") (license license:expat)))) +(define-public r-bpcells + (let ((commit "32ce67312185d3ed1046b4218dd3aaf1b35dcfda") + (revision "1")) + (package + (name "r-bpcells") + (version (git-version "0.1.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/bnprks/BPCells/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0im4sqvbii326acmd1hnimyzsllnbvnh9al3dp1nla6isgi7s6cg")))) + (properties `((upstream-name . "BPCells"))) + (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'do-not-tune + (lambda _ + (substitute* "configure" + (("\"-march=native\"") "\"\""))))))) + (inputs (list hdf5 zlib)) + (propagated-inputs (list r-dplyr + r-ggplot2 + r-ggrepel + r-hexbin + r-magrittr + r-matrix + r-patchwork + r-rcolorbrewer + r-rcpp + r-rcppeigen + r-rlang + r-scales + r-scattermore + r-stringr + r-tibble + r-tidyr + r-vctrs)) + (native-inputs (list pkg-config)) + (home-page "https://github.com/bnprks/BPCells/") + (synopsis "Single cell counts matrices to PCA") + (description + "This is a package providing efficient operations for single cell +ATAC-seq fragments and RNA counts matrices. It is interoperable with standard +file formats, and introduces efficient bit-packed formats that allow large +storage savings and increased read speeds.") + (license license:gpl3)))) + (define-public r-btools (let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5") (revision "1")) |