diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 112d0e577c..2963dd321d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4889,6 +4889,43 @@ subsequent visualization, annotation and storage of results.") ;; LGPLv2.1+ (license (list license:gpl2 license:lgpl2.1+)))) +(define-public plink-ng + (package (inherit plink) + (name "plink-ng") + (version "1.90b4") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/chrchang/plink-ng/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "09ixrds009aczjswxr2alcb774mksq5g0v78dgjjn1h4dky0kf9a")))) + (build-system gnu-build-system) + (arguments + '(#:tests? #f ;no "check" target + #:make-flags (list "BLASFLAGS=-llapack -lopenblas" + "CFLAGS=-Wall -O2 -DDYNAMIC_ZLIB=1" + "ZLIB=-lz" + "-f" "Makefile.std") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ (chdir "1.9") #t)) + (delete 'configure) ; no "configure" script + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") + "/bin/"))) + (install-file "plink" bin) + #t)))))) + (inputs + `(("zlib" ,zlib) + ("lapack" ,lapack) + ("openblas" ,openblas))) + (home-page "https://www.cog-genomics.org/plink/") + (license license:gpl3+))) + (define-public smithlab-cpp (let ((revision "1") (commit "728a097bec88c6f4b8528b685932049e660eff2e")) |