summaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm40
1 files changed, 0 insertions, 40 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d23c3cb94e..87ba47e2e4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9196,46 +9196,6 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-edaseq
- (package
- (name "r-edaseq")
- (version "2.24.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "EDASeq" version))
- (sha256
- (base32
- "0fznj7lsgkss1svv4rq8g87s1gmnbd7hccim41dv1c2w2nl0n2ip"))))
- (properties `((upstream-name . "EDASeq")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-aroma-light" ,r-aroma-light)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biocmanager" ,r-biocmanager)
- ("r-biomart" ,r-biomart)
- ("r-biostrings" ,r-biostrings)
- ("r-genomicfeatures" ,r-genomicfeatures)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-rsamtools" ,r-rsamtools)
- ("r-shortread" ,r-shortread)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://github.com/drisso/EDASeq")
- (synopsis "Exploratory data analysis and normalization for RNA-Seq")
- (description
- "This package provides support for numerical and graphical summaries of
-RNA-Seq genomic read data. Provided within-lane normalization procedures to
-adjust for GC-content effect (or other gene-level effects) on read counts:
-loess robust local regression, global-scaling, and full-quantile
-normalization. Between-lane normalization procedures to adjust for
-distributional differences between lanes (e.g., sequencing depth):
-global-scaling and full-quantile normalization.")
- (license license:artistic2.0)))
-
(define-public r-interactivedisplaybase
(package
(name "r-interactivedisplaybase")