diff options
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r-- | gnu/packages/cran.scm | 178 |
1 files changed, 102 insertions, 76 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8277026c32..ff2490bc31 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1293,14 +1293,14 @@ coordinates.") (define-public r-rgooglemaps (package (name "r-rgooglemaps") - (version "1.4.5") + (version "1.4.5.1") (source (origin (method url-fetch) (uri (cran-uri "RgoogleMaps" version)) (sha256 (base32 - "1acf0qc9597apcidjzrpvwhg9ihypr38jigc10jvqn33qbn1i9s7")))) + "1lrbl0nax7rzk460mh6rq9hydahdi3ckxk4kxx3xij29jl3lmijh")))) (properties `((upstream-name . "RgoogleMaps"))) (build-system r-build-system) (propagated-inputs `(("r-png" ,r-png))) @@ -1623,7 +1623,7 @@ print, summary, plot, update, etc. (sha256 (base32 "1lcq7r0q4jb8x6k023zr2ydj2dg925bqqbkhx1phpnyjrk897498")))) (build-system r-build-system) - (home-page "http://ps.r-lib.org") + (home-page "https://ps.r-lib.org") (synopsis "List, query, and manipulate system processes") (description "The ps package implements an API to list, query, and manipulate system @@ -1941,14 +1941,14 @@ compare different dendrograms to one another.") (define-public r-getoptlong (package (name "r-getoptlong") - (version "0.1.7") + (version "0.1.8") (source (origin (method url-fetch) (uri (cran-uri "GetoptLong" version)) (sha256 (base32 - "1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr")))) + "1l8xkvyl152bsyvxazsvx2sm1vkygn75x0lsg3sbg7xp6drdn3kc")))) (properties `((upstream-name . "GetoptLong"))) (build-system r-build-system) (inputs @@ -2034,18 +2034,15 @@ statistical functions and other utilities to ease their usage.") (define-public r-prettyunits (package (name "r-prettyunits") - (version "1.0.2") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "prettyunits" version)) (sha256 (base32 - "0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m")))) + "0453vvslpkj1ysyv0cy9hw98q5wlnj7bvvz7vzl5ld8ij82lwy5c")))) (build-system r-build-system) - (propagated-inputs - `(("r-assertthat" ,r-assertthat) - ("r-magrittr" ,r-magrittr))) (home-page "https://github.com/gaborcsardi/prettyunits") (synopsis "Pretty, human readable formatting of quantities") (description @@ -2264,7 +2261,7 @@ quantile mixture from L-moments and trimmed L-moments.") (base32 "1mi3ig9jq0kd7yrwc5m37lmrw04p1b4lirnbsxi10z3n5yay4429")))) (build-system r-build-system) - (home-page "http://www.ral.ucar.edu/staff/ericg") + (home-page "https://ral.ucar.edu/staff/ericg/") (synopsis "Functions for confidence intervals and object information") (description "This package provides some very simple method functions for confidence @@ -2289,7 +2286,7 @@ SpatialVx.") (propagated-inputs `(("r-distillery" ,r-distillery) ("r-lmoments" ,r-lmoments))) - (home-page "http://www.assessment.ucar.edu/toolkit/") + (home-page "https://www.assessment.ucar.edu/toolkit/") (synopsis "Extreme value analysis") (description "ExtRemes is a suite of functions for carrying out analyses on the @@ -2365,14 +2362,14 @@ and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and (define-public r-bdsmatrix (package (name "r-bdsmatrix") - (version "1.3-3") + (version "1.3-4") (source (origin (method url-fetch) (uri (cran-uri "bdsmatrix" version)) (sha256 (base32 - "17ddvz4gnih7rx0lr1gzk280xyh6x796cf2x794dvplpiiq83skh")))) + "1sh6pg43rgqvips4fx0k4vmp5i9lmniix0bqwj2yq5m06gs227i5")))) (properties `((upstream-name . "bdsmatrix"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/bdsmatrix/") @@ -2555,14 +2552,14 @@ statistics/methods are implemented.") (define-public r-suppdists (package (name "r-suppdists") - (version "1.1-9.4") + (version "1.1-9.5") (source (origin (method url-fetch) (uri (cran-uri "SuppDists" version)) (sha256 (base32 - "1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw")))) + "01j6p94m1g363nph2158fq2rmd6z3h5dvcv6aidh2d6syw131xak")))) (properties `((upstream-name . "SuppDists"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/SuppDists") @@ -2638,14 +2635,14 @@ contexts.") (define-public r-squarem (package (name "r-squarem") - (version "2017.10-1") + (version "2020.1") (source (origin (method url-fetch) (uri (cran-uri "SQUAREM" version)) (sha256 (base32 - "10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv")))) + "0v4ax1v8diw2w7fdhfzz1z0bwixkmcrc39ax3y116f399rc06qbs")))) (properties `((upstream-name . "SQUAREM"))) (build-system r-build-system) (home-page "http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html") @@ -2910,14 +2907,14 @@ Delaunay triangulation and convex hull computation.") (define-public r-ddalpha (package (name "r-ddalpha") - (version "1.3.10") + (version "1.3.11") (source (origin (method url-fetch) (uri (cran-uri "ddalpha" version)) (sha256 (base32 - "1064g7y8d7kmvd5kjc2m48yvidmh2ci1y0xgil3pcx4ix6mf0ljz")))) + "1sdnb47r534nh138zk3a6b2mgi74nvshc7p5m304vjs9jlx4l2y3")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) @@ -3015,18 +3012,17 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "1.9.12") + (version "1.9.12.31") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "13r7fyjsl93m121awnwfhya8a0lw0l2byn60yqdbf9gp3lmb9ny0")))) + "02i9p6appf15hjdsi58g39bzs9as40f9qhy8m7ki30hd1fz1vrr5")))) (build-system r-build-system) (propagated-inputs - `(("r-foreign" ,r-foreign) - ("r-lattice" ,r-lattice) + `(("r-lattice" ,r-lattice) ("r-mnormt" ,r-mnormt) ("r-nlme" ,r-nlme))) (home-page "https://cran.r-project.org/web/packages/psych/") @@ -3104,14 +3100,14 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.8") + (version "0.1.9") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "1n32qc2a3n9cykm8dv9qcr77kdhqfsjiqf6kgfk9s0lnpx2zaldm")))) + "1fmnka583sqm6v5bhxbllb4cd5xfqbf268aij2xgxiwckv3c0ynm")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -3641,14 +3637,14 @@ modeling for empirical income distributions.") (define-public r-vcd (package (name "r-vcd") - (version "1.4-4") + (version "1.4-5") (source (origin (method url-fetch) (uri (cran-uri "vcd" version)) (sha256 (base32 - "1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5")))) + "0pqf1sdp0d60aqc7721hy2zfcp57902by0i28jqbn683dd50c21a")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -3752,14 +3748,14 @@ plotting. a three dimensional point cloud.") (define-public r-ggridges (package (name "r-ggridges") - (version "0.5.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "ggridges" version)) (sha256 (base32 - "0dhwcpy785ac2ny5bjp284595nnybi3554wd0yffsli0vzf7ry01")))) + "03pz257aw0mkh5k75rby9givkc1ky3n5scvhjhjiz9vry9fpffmh")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -3799,14 +3795,14 @@ plots in @code{ggplot2}.") (define-public r-cli (package (name "r-cli") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "1gv3zqdipj29ivkw5dsi1qdlra7q4lcrcqvlg9fns7d670yglfki")))) + "0x28i7kj4qndk6mnn99qn9w2nfldv8csjnsn0n8phfnxq5hnmp5y")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -4012,13 +4008,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.11") + (version "0.12") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "0dncw6bqkal7nyarrrrj9arxy0y3nkdzmrbibcjh84m1cxd4phiw")))) + (base32 "0sgh8kafi9x1glmmcp1ly827pm8q7fsfngbplr41fbb4nc9363df")))) (build-system r-build-system) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") @@ -4156,14 +4152,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.18") + (version "0.19") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "04mpbhadixbxmnazj0q6cj973cajchscvyh1k6a5b3qk26dp5krr")))) + "0jlcrvcqcbkimg7w40z5vhlnakb829vfgqpspm3pfl8karwzgqp6")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -4624,14 +4620,14 @@ interface.") (define-public r-trend (package (name "r-trend") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "trend" version)) (sha256 (base32 - "1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q")))) + "09b6ycyfgs4xlhx6kn6qm5rl2acp58hzhv8qclzn3kb1wjjyvxy5")))) (build-system r-build-system) (propagated-inputs `(("r-extradistr" ,r-extradistr))) @@ -5772,14 +5768,14 @@ Python to R they are converted back to R types.") (define-public r-bibtex (package (name "r-bibtex") - (version "0.4.2.1") + (version "0.4.2.2") (source (origin (method url-fetch) (uri (cran-uri "bibtex" version)) (sha256 (base32 - "1ks1w59ldwmfd1sj8ap7smyhf8dhykv7xnwrl8z9xzkcfpv1rbc0")))) + "140hkjzdp3033cvji861rd06z1ixgpnn4n5amygqsmhnixk8ff07")))) (build-system r-build-system) (propagated-inputs `(("r-stringr" ,r-stringr))) (home-page "https://github.com/romainfrancois/bibtex") @@ -6015,14 +6011,14 @@ steps and provides ggplot2-based elegant data visualization.") (define-public r-fansi (package (name "r-fansi") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "fansi" version)) (sha256 (base32 - "02f2rx7v7wz6w97m2slwky2i5y8f9iafycmkyr3siy3z3k8fj171")))) + "028ywjy538psnmdnddvy5jr3idzffr4hikzr4x97x0m30g4fws9w")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes @@ -6057,14 +6053,14 @@ results to the user.") (define-public r-hdf5r (package (name "r-hdf5r") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "hdf5r" version)) (sha256 (base32 - "1pq12vkfqxvcaznwaxvjdg3acimk5a20m8h18sixvxc34vnqxw8f")))) + "0hvi2cvyv6zlxgpawnmsihxclp2ln88slbrnmaxagmjswskxsrpx")))) (build-system r-build-system) (inputs `(("hdf5" ,hdf5) @@ -6387,14 +6383,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.7.1") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0scjmr8qvwaswb9wfq2lxp1v5fl72way8cid9agrf0z1agp0adad")))) + "1bkcwvjpfy4q4k478x8x42yiqz6v0fk6z6hfp6fli3h63smlmck0")))) (build-system r-build-system) (home-page "https://easystats.github.io/insight/") (synopsis "Easy access to model information for various model objects") @@ -6442,14 +6438,14 @@ vice versa), or to deal with multiple declared missing values.") (define-public r-sjmisc (package (name "r-sjmisc") - (version "2.8.2") + (version "2.8.3") (source (origin (method url-fetch) (uri (cran-uri "sjmisc" version)) (sha256 (base32 - "0rl0bmk91wc4dxdgy008fl0dwkx3ffvys30vgpnr78lb4pk45nb2")))) + "0w8l9grmp4q775jrf4q6rxx36ld5daz9b0gdxyyh42xfihk6m62h")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -6871,14 +6867,14 @@ containing one or more SNPs that evolved under directional selection.") (define-public r-proc (package (name "r-proc") - (version "1.15.3") + (version "1.16.1") (source (origin (method url-fetch) (uri (cran-uri "pROC" version)) (sha256 (base32 - "1jx8af9p6sxbypqvj1cci7q9sbyaw310inbjxibjcr3acj59h45h")))) + "0qkp1byl2xspxaaf0by6mvvrhg7wlz6fxmynz2hkh0ds24w7ig9m")))) (properties `((upstream-name . "pROC"))) (build-system r-build-system) (propagated-inputs @@ -8225,14 +8221,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-11") + (version "1.4-12") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "0jw9661hs4396wz9vflk3rak0ryzj1cg2pnndsn1gb4fjyf2vlhb")))) + "14c2f10rz546w7ly5f4r6wnd07yj5gic38an17gxny1vf2nsff0b")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) @@ -8383,14 +8379,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.7.15") + (version "1.7.16") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "1r2d8c5iazihba42sn33yarv0dcfiy989sx64zcf14zr8k6cgjzs")))) + "0lly12hdi99iklwr0vg9xkyhi038w4gncbf895qcwbndmqp0lx44")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -8699,7 +8695,7 @@ back to file after modifications.") `(("r-rcpp" ,r-rcpp))) (native-inputs `(("pkg-config" ,pkg-config))) - (home-page "http://fs.r-lib.org") + (home-page "https://fs.r-lib.org") (synopsis "Cross-platform file system operations based on libuv") (description "This package provides a cross-platform interface to file system @@ -11692,14 +11688,14 @@ the local machine to, say, distributed processing on a remote compute cluster.") (define-public r-future-apply (package (name "r-future-apply") - (version "1.3.0") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "future.apply" version)) (sha256 (base32 - "0wd3bh114zkvrqlpn8gqz4ix1igr9hr8x72h2g00a7mqkfjfqx33")))) + "1kgq6dv96hdy35kysqkn606nj7s9dp4ibgpm6n46gqhc5n75lzkk")))) (properties `((upstream-name . "future.apply"))) (build-system r-build-system) (propagated-inputs @@ -12108,14 +12104,14 @@ transformation, respectively.") (define-public r-shinyjs (package (name "r-shinyjs") - (version "1.0") + (version "1.1") (source (origin (method url-fetch) (uri (cran-uri "shinyjs" version)) (sha256 (base32 - "113zpijri0l80rlgrvqn6bxk0sdqgl79h7yhja2p76f9dc9i2sr8")))) + "14k8y313ppj23m9rhlk8jc94x6sbn3qrsnx6xrijiyv8m8dii1l9")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -13620,13 +13616,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.16") + (version "0.17") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "1gwgvx1yg6q3wccnhidr3gshdvlgr42i4pvlg4h29kpsa7smjiv1")))) + "10b4gnd6z3w13pysqqan43blxcbk7bgbzc7wr83b23ag1lh2n40j")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -13915,14 +13911,14 @@ interaction search in high-dimensional data.") (define-public r-rttf2pt1 (package (name "r-rttf2pt1") - (version "1.3.7") + (version "1.3.8") (source (origin (method url-fetch) (uri (cran-uri "Rttf2pt1" version)) (sha256 (base32 - "12hf9r3mhjr9sawdvf7qhjf1zph2q64f77i81jwvy7awidbm0kja")))) + "0b3f2zkmbyshn19cnaaf042d0zwf43l9jnkqizfhxxwb93a4c1jn")))) (properties `((upstream-name . "Rttf2pt1"))) (build-system r-build-system) (home-page "https://github.com/wch/Rttf2pt1") @@ -15040,14 +15036,14 @@ extends the lme4 package.") (define-public r-batchtools (package (name "r-batchtools") - (version "0.9.11") + (version "0.9.12") (source (origin (method url-fetch) (uri (cran-uri "batchtools" version)) (sha256 (base32 - "02mj21ypcjv5fs7ajf63p6bq0cyvihdl55hlpqx6kmsfjin1cr0v")))) + "16x524hvy9d8p7r4fi1c8mixcvzgsjbf3y0vxaa56ssbbab4p7f9")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -15350,14 +15346,14 @@ easily.") (define-public r-umap (package (name "r-umap") - (version "0.2.4.0") + (version "0.2.4.1") (source (origin (method url-fetch) (uri (cran-uri "umap" version)) (sha256 (base32 - "1dzbwq96k5vqr64wk6s26ks4311h570xg6gf0prr4vnn033pqnch")))) + "1pnh3hv8ihiz2nszqp797lkrdhhna2a6mzpizbsk0s9m8cj4wxva")))) (build-system r-build-system) (propagated-inputs `(("r-openssl" ,r-openssl) @@ -15881,14 +15877,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "0ifb9g1h8sn661q7jf9d8glk58gxdcym5ywbmx7phwn0y3is5wdv")))) + "0z1hdxgippchij28h8xbbz6l29kkyakwxxj5vxnpic40cpkqqdd6")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs @@ -16038,13 +16034,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.27") + (version "1.27.1") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "1qhjq4vxlxd9qmhf6i26x1k7bzhldlxzbby1zgcplicdvlqk951d")))) + (base32 "05sax045qrk550gsn2i7krb9rbg51rx88x4v190acsigqknxffrv")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -17640,7 +17636,7 @@ forest) is fit on the kernel matrix of a subset of the training data.") "01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm")))) (properties `((upstream-name . "dummies"))) (build-system r-build-system) - (home-page "http://www.decisionpatterns.com") + (home-page "https://decisionpatterns.com") (synopsis "Create dummy/indicator variables flexibly and efficiently") (description "This package lets you expand factors, characters and other eligible @@ -17883,14 +17879,14 @@ allowed.") (define-public r-gdina (package (name "r-gdina") - (version "2.7.3") + (version "2.7.8") (source (origin (method url-fetch) (uri (cran-uri "GDINA" version)) (sha256 (base32 - "0875xfbm36gqzr0116xzlbm8rlff85rybr4s4hjzfflfvjdhgvfx")))) + "1aj2ssd7vpszl7p22srkkkpx4a7gkc38vrv3bq7j1zr32096y4zj")))) (properties `((upstream-name . "GDINA"))) (build-system r-build-system) (propagated-inputs @@ -18380,6 +18376,36 @@ simple, modern C++ library for image processing.") it may be seen by an animal with less acute vision.") (license license:gpl2+))) +(define-public r-caret + (package + (name "r-caret") + (version "6.0-85") + (source + (origin + (method url-fetch) + (uri (cran-uri "caret" version)) + (sha256 + (base32 + "0jxbf2zcvbb5s2pnjzg182awjvylc57q7z5plx6gs6gm62zxjafs")))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreach" ,r-foreach) + ("r-ggplot2" ,r-ggplot2) + ("r-lattice" ,r-lattice) + ("r-modelmetrics" ,r-modelmetrics) + ("r-nlme" ,r-nlme) + ("r-plyr" ,r-plyr) + ("r-proc" ,r-proc) + ("r-recipes" ,r-recipes) + ("r-reshape2" ,r-reshape2) + ("r-withr" ,r-withr))) + (home-page "https://github.com/topepo/caret") + (synopsis "Classification and regression training") + (description + "This package provides miscellaneous functions for training and plotting +classification and regression models.") + (license license:gpl2+))) + (define-public r-adabag (package (name "r-adabag") @@ -18845,14 +18871,14 @@ Langford (2006) @url{doi:10.1145/1143844.1143857}.") (define-public r-poibin (package (name "r-poibin") - (version "1.4") + (version "1.5") (source (origin (method url-fetch) (uri (cran-uri "poibin" version)) (sha256 (base32 - "1rllgmk7yanb5amysl33kmi11lx86q5kqblyb8qqb3ckj2w4jhm2")))) + "1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v")))) (properties `((upstream-name . "poibin"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/poibin/") |