diff options
Diffstat (limited to 'gnu/packages/machine-learning.scm')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 117 |
1 files changed, 117 insertions, 0 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index fbc06f96b6..fc8de01066 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -43,6 +43,7 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system ocaml) + #:use-module (guix build-system pyproject) #:use-module (guix build-system python) #:use-module (guix build-system r) #:use-module (guix build-system trivial) @@ -1180,6 +1181,52 @@ number of threads used in the threadpool-backed of common native libraries used for scientific computing and data science (e.g. BLAS and OpenMP).") (license license:bsd-3))) +(define-public python-imbalanced-learn + (package + (name "python-imbalanced-learn") + (version "0.9.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "imbalanced-learn" version)) + (sha256 + (base32 + "0qnrmysnqpc8ii1w5n8mci20gcjhmjr7khvk7f2apdbqc2pgf52f")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'unbreak-tests + (lambda _ + ;; The doctests require tensorflow + (substitute* "setup.cfg" + (("--doctest-modules") "")) + ;; Some tests require a home directory + (setenv "HOME" (getcwd)) + ;; We don't have keras + (delete-file "imblearn/keras/tests/test_generator.py") + ;; We don't have tensorflow + (delete-file "imblearn/tensorflow/tests/test_generator.py")))))) + (propagated-inputs + (list python-joblib + python-numpy + python-scikit-learn + python-scipy + python-threadpoolctl)) + (native-inputs + (list python-black + python-flake8 + python-mypy + python-pandas + python-pytest + python-pytest-cov)) + (home-page "https://github.com/scikit-learn-contrib/imbalanced-learn") + (synopsis "Toolbox for imbalanced dataset in machine learning") + (description "This is a Python package offering a number of re-sampling +techniques commonly used in datasets showing strong between-class imbalance. +It is compatible with @code{scikit-learn}.") + (license license:expat))) + (define-public python-pynndescent (package (name "python-pynndescent") @@ -1283,6 +1330,76 @@ good at identifying feature interactions that are normally overlooked by standard feature selection algorithms.") (license license:expat))) +(define-public python-cleanlab + (package + (name "python-cleanlab") + (version "2.2.0") + ;; The version on pypi does not come with tests. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/cleanlab/cleanlab") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "00dqhxpwg781skknw943ynll2s44g4j125dx8aapk1d5d71sbzqy")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'disable-bad-tests + (lambda _ + ;; XXX This requires pytest lazy_fixture + (delete-file "tests/test_multilabel_classification.py") + ;; Requires tensorflow + (delete-file "tests/test_frameworks.py") + ;; Tries to download datasets from the internet at runtime. + (delete-file "tests/test_dataset.py")))))) + (propagated-inputs + (list python-numpy + python-pandas + python-scikit-learn + python-termcolor + python-tqdm)) + (native-inputs + (list python-pytest + python-pytorch + python-torchvision)) + (home-page "https://cleanlab.ai") + (synopsis "Automatically find and fix dataset issues") + (description + "cleanlab automatically finds and fixes errors in any ML dataset. This +data-centric AI package facilitates machine learning with messy, real-world +data by providing clean labels during training.") + (license license:agpl3+))) + +(define-public python-cleanlab-1 + (package + (inherit python-cleanlab) + (name "python-cleanlab") + (version "1.0.1") + ;; The version on pypi does not come with tests. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/cleanlab/cleanlab") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "03kw2agnhadmrq9zvrlvvlc2c37dpflga5nhmsaag8scw223gqyp")))) + (build-system pyproject-build-system) + (arguments (list)) + (propagated-inputs + (list python-numpy + python-scikit-learn + python-scipy + python-tqdm)) + (native-inputs + (list python-pytest)))) + (define-public python-cmaes (package (name "python-cmaes") |