diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index be9f7579b6..df50fbc547 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1077,6 +1077,45 @@ This package provides some simple approaches to in silico creation of quality problems in CEL-level data to help evaluate performance of quality metrics.") (license license:artistic2.0))) +(define-public r-affycoretools + (package + (name "r-affycoretools") + (version "1.56.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affycoretools" version)) + (sha256 + (base32 + "17dxpzhwwdwnxkdpmyjwdnacg41hw60mlc71w4nzlvs28sfsy09s")))) + (properties `((upstream-name . "affycoretools"))) + (build-system r-build-system) + (propagated-inputs + `(("r-affy" ,r-affy) + ("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-dbi" ,r-dbi) + ("r-edger" ,r-edger) + ("r-gcrma" ,r-gcrma) + ("r-ggplot2" ,r-ggplot2) + ("r-gostats" ,r-gostats) + ("r-gplots" ,r-gplots) + ("r-hwriter" ,r-hwriter) + ("r-lattice" ,r-lattice) + ("r-limma" ,r-limma) + ("r-oligoclasses" ,r-oligoclasses) + ("r-reportingtools" ,r-reportingtools) + ("r-rsqlite" ,r-rsqlite) + ("r-s4vectors" ,r-s4vectors) + ("r-xtable" ,r-xtable))) + (home-page "https://bioconductor.org/packages/affycoretools/") + (synopsis "Functions for analyses with Affymetrix GeneChips") + (description + "This package provides various wrapper functions that have been written +to streamline the more common analyses that a Biostatistician might see.") + (license license:artistic2.0))) + (define-public r-annotate (package (name "r-annotate") |