diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 56d32ed0d9..73f415541a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -40,6 +40,7 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages statistics) #:use-module (gnu packages web) + #:use-module (gnu packages xml) #:use-module (srfi srfi-1)) @@ -5627,6 +5628,53 @@ package.") sequential way to mimic the manual gating strategy.") (license license:artistic2.0))) +(define-public r-cytoml + (package + (name "r-cytoml") + (version "1.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "CytoML" version)) + (sha256 + (base32 + "0m8x18wkvis85cawv7j07pk59w76wnzy93ia99gd24j82z4h97p1")))) + (properties `((upstream-name . "CytoML"))) + (build-system r-build-system) + (inputs + `(("libxml2" ,libxml2))) + (propagated-inputs + `(("r-base64enc" ,r-base64enc) + ("r-bh" ,r-bh) + ("r-biobase" ,r-biobase) + ("r-corpcor" ,r-corpcor) + ("r-cytolib" ,r-cytolib) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-flowcore" ,r-flowcore) + ("r-flowworkspace" ,r-flowworkspace) + ("r-ggcyto" ,r-ggcyto) + ("r-graph" ,r-graph) + ("r-jsonlite" ,r-jsonlite) + ("r-lattice" ,r-lattice) + ("r-ncdfflow" ,r-ncdfflow) + ("r-opencyto" ,r-opencyto) + ("r-plyr" ,r-plyr) + ("r-rbgl" ,r-rbgl) + ("r-rcpp" ,r-rcpp) + ("r-rcppparallel" ,r-rcppparallel) + ("r-rgraphviz" ,r-rgraphviz) + ("r-rprotobuflib" ,r-rprotobuflib) + ("r-runit" ,r-runit) + ("r-xml" ,r-xml) + ("r-yaml" ,r-yaml))) + (home-page "https://github.com/RGLab/CytoML") + (synopsis "GatingML interface for cross platform cytometry data sharing") + (description + "This package provides an interface to implementations of the GatingML2.0 +standard to exchange gated cytometry data with other software platforms.") + (license license:artistic2.0))) + (define-public r-flowsom (package (name "r-flowsom") |