diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4b2fe75994..f3419900f5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6188,6 +6188,52 @@ multiple features (e.g. genes). @code{Seurat} and @code{SingleCellExperiment} objects can be used within Nebulosa.") (license license:gpl3))) +;; This is a CRAN package but it requires r-rcy3, a Bioconductor package. +(define-public r-netgsa + (package + (name "r-netgsa") + (version "4.0.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "netgsa" version)) + (sha256 + (base32 "1m9myxsbvbljr038azxzakpbh20a21qhiy20d0ipvjc5asq3kfla")))) + (properties `((upstream-name . "netgsa"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-corpcor + r-data-table + r-dplyr + r-genefilter + r-glassofast + r-glmnet + r-graph + r-graphite + r-httr + r-igraph + r-magrittr + r-matrix + r-msigdbr + r-org-hs-eg-db + r-quadprog + r-rcpp + r-rcppeigen + r-rcy3 + r-reshape2 + r-rlang)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mikehellstern/netgsa") + (synopsis "Network-Based gene set analysis") + (description + "This package lets you carry out network-based gene set analysis by +incorporating external information about interactions among genes, as well as +novel interactions learned from data. It implements methods described in +Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, +Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, +Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.") + (license license:gpl3+))) + ;; This is a CRAN package, but it depends on Bioconductor packages. (define-public r-nmf (package |