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2021-12-02gnu: Add python-biothings-client.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-biothings-client): New variable.
2021-12-02gnu: Add r-scdblfinder.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
2021-12-02Revert "gnu: godot: Update to 3.4."Leo Famulari
This reverts commit dd4365efa1c6fb609de9bd7cd10f9c82e064aed4. We reverted this commit because it broke the operation of the only package in Guix that depends on Godot, SuperStarfighter: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=52233#20
2021-12-02gnu: cl-tooter: Update to 1.0.0-3.ec97bee.cage
* gnu/packages/lisp-xyz.scm (cl-tooter): Update to 1.0.0-3.ec97bee. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02gnu: cl-i18n: Update to 0.5.1-1.4216fe9.cage
* gnu/packages/lisp-xyz.scm (cl-i18n): Update to 0.5.1-1.4216fe9. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02gnu: godot: Update to 3.4.Andy Tai
* gnu/packages/game-development.scm (godot): Update to 3.4. [source]: Add new bundled dependencies to the origin snippet. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-01gnu: linux-libre 4.19: Update to 4.19.219.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.219. (linux-libre-4.19-pristine-source): Update hash.
2021-12-01gnu: linux-libre 5.4: Update to 5.4.163.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.163. (linux-libre-5.4-pristine-source): Update hash.
2021-12-01gnu: linux-libre 5.10: Update to 5.10.83.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.83. (linux-libre-5.10-pristine-source): Update hash.
2021-12-01gnu: linux-libre: Update to 5.15.6.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.6. (linux-libre-5.15-pristine-source): Update hash.
2021-12-02gnu: Remove couger.Ricardo Wurmus
This package has been moved to the Guix Past channel. * gnu/packages/bioinformatics.scm (couger): Remove variable.
2021-12-02gnu: randomjungle: Fix compatibility errors.Ricardo Wurmus
* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase 'fix-compatibility-errors to patch type errors.
2021-12-01news: Add entry about Icedove 91.Jonathan Brielmaier
* etc/news.scm: New entry.
2021-12-01gnu: icecat: Remove leftovers of release 78.Jonathan Brielmaier
No longer required as icedove is now based on the 91 branch. * gnu/packages/gnuzilla.scm (mozilla-78-compare-locales): Remove. (all-mozilla-78-locales): Remove. (%icecat-78-version): Remove. (icecat-78-source): Remove.
2021-12-01gnu: icedove: Update to 91.3.2.Jonathan Brielmaier
The profile folder moved from `~/.icedove` to `~/.thunderbird`. You may need to migrate (copy) your profile over. * gnu/packages/gnuzilla.scm (icedove): Update to 91.3.2. [source]: Switch back to icecat-source. [arguments]: `obj-x86_64-pc-linux-gnu` folder is now generated during build, so it can't deleted in front. Remove surounding `'` from MOZ_DEDICATED_PROFILES to follow source code. MOZ_APP_BASENAME and MOZ_APP_DISPLAYNAME are no longer set in `comm/mail/confvars.sh`. Update path of `customizeToolbar.js`. Delete `'bootstrap` phase and no longer set AUTOCONF variable as the autoconf build part was removed. Set MACH_USE_SYSTEM_PYTHON and MOZ_APP_NAME, the latter is the binary name. `--enable-calendar` flag got removed. Use bundled NSS until core-updates merge. [inputs]: Update to `icu4c-69` and `nspr-4.32`. Use bundled NSS for now. [native-inputs]: Switch to comm-esr91 branch. Remove autoconf, add m4. Update rust and cargo to 1.51. Use `rust-cbindgen-0.19`.
2021-12-01gnu: Add nspr@4.32.Jonathan Brielmaier
Required for icecat/icedove 91. * gnu/packages/nss.scm (nspr-4.32): New variable.
2021-12-01gnu: emacs-citar: Remove unnecessary input.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-citar)[propagated-inputs]: Remove emacs-helm-bibtex.
2021-12-01gnu: bullet: Update to 3.17.Andy Tai
* gnu/packages/game-development.scm (bullet): Update to 3.17. [arguments]<#:configure-flags>: Disable access to third-party libs. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: Update Trezor support.Attila Lendvai
* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Apply previous removal. * gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4. [source]: Remove now useless patch. (python-mnemonic): Update to 0.20. (python-trezor): Update to 0.12.4 (trezor-agent): Update to 0.11.0-1. [source]: Add file-name field. [arguments]: Remove trailing #T in phases. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: python-daemon: Update to 2.3.0.Attila Lendvai
* gnu/packages/python-xyz.scm (python-daemon): Update to 2.3.0. [native-inputs]: Add python-coverage and python-twine. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: openssh: Add support for ecdsa-sk, ed25519-sk ssh keys.Ahmad Jarara
* gnu/packages/ssh.scm (openssh)[inputs]: Add LIBFIDO2. [arguments]: Pass "--with-security-key-builtin". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01gnu: Add libfido2.Ahmad Jarara
* gnu/packages/security-token.scm (libfido2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01gnu: Add libcbor.Ahmad Jarara
* gnu/packages/compression.scm (libcbor): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01gnu: Add vim-nerdtree.Foo Chuan Wei
* gnu/packages/vim.scm (vim-nerdtree): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01build-system: haskell: Add ‘hackage-uri’ procedure.Xinglu Chen
* guix/build-system/haskell (hackage-uri): New procedure. * guix/import/hackage.scm (hackage-module->sexp, latest-release): Use it. * tests/hackage.scm (match-ghc-foo, match-ghc-foo-6, match-ghc-foo-revision, match-ghc-foo-import): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01gnu: Add smplayer.Attila Lendvai
* gnu/packages/video.scm (smplayer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01gnu: Add python-codespell.Felix Gruber
* gnu/packages/python-xyz.scm (python-codespell): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01installer: Make LUKS2 the default format for encrypted devicesJosselin Poiret
* gnu/installer/parted.scm (luks-format-and-open): Change it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01doc: Document LUKS2 GRUB support and shortcomingsJosselin Poiret
* doc/guix.texi (Keyboard Layout, Networking, and Partitioning)[Disk Partitioning]: Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01gnu: system: Add LUKS2 support for the root file system.Josselin Poiret
* gnu/bootloader/grub.scm (grub-configuration-file): Add 'insmod luks2'. * gnu/system/mapped-devices.scm (open-luks-device): Create '/run/cryptsetup/' directory. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01inferior: 'cached-channel-instance' does not cache unauthenticated instances.Ludovic Courtès
The comment saying that caching is fine even when AUTHENTICATE? is false was true in commit 838ac881ec98cb71d4a4e4b20773573f99ecbf25, but it became incorrect in 7cfd789150f448cf5256b88915bae4163cc9db03, which no longer calls 'latest-channel-instances' on cache hits. * guix/inferior.scm (cached-channel-instance): Do not create CACHED when AUTHENTICATE? is false.
2021-12-01gnu: sdrangel: Add missing input.Guillaume Le Vaillant
QtQuick is required by some runtime features. * gnu/packages/radio.scm (sdrangel)[inputs]: Add qtquickcontrols2.
2021-12-01gnu: python-language-server: Add deprecated alias.jgart via Guix-patches via
* gnu/packages/python-xyz.scm (python-language-server): New variable. Add deprecated alias for package removed in the parent commit. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: Add python-lsp-server.jgart via Guix-patches via
* gnu/packages/python-xyz.scm (python-language-server): Delete variable. * gnu/packages/python-xyz.scm (python-lsp-server): New variable. Removes deprecated python-language-server package and adds maintained fork. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: python-lsp-jsonrpc: Add deprecated alias.jgart via Guix-patches via
* gnu/packages/python-xyz.scm (python-jsonrpc-server): New variable. Add deprecated alias for package removed in the parent commit. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: Add python-lsp-jsonrpc.jgart via Guix-patches via
* gnu/packages/python-xyz.scm (python-jsonrpc-server): Delete variable. * gnu/packages/python-xyz.scm (python-lsp-jsonrpc): New variable. Removes deprecated python-jsonrpc-server package and adds maintained fork. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: python-jedi: Update to 0.18.1.jgart
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.18.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: python2-jedi: Remove package.jgart via Guix-patches via
* gnu/packages/python-xyz.scm (python2-jedi): Delete variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: python-parso: Update to 0.8.2.jgart via Guix-patches via
* gnu/packages/python-xyz.scm (python-parso): Update to 0.8.2. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: yggdrasil: Update to 0.4.1.raingloom
* gnu/packages/networking.scm (yggdrasil): Update to 0.4.1. * gnu/packages/patches/yggdrasil-extra-config.patch: Update for new version. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: yggdrasil: Update to 0.4.0.raingloom
* gnu/packages/patches/yggdrasil-extra-config.patch: Update patch. * gnu/packages/networking.scm (yggdrasil): Update to 0.4.0. [arguments]: Also install genkeys. [propagated-inputs]: Remove go-github-com-cheggaaa-pb; add go-golang-org-x-sys, go-github-com-mattn-go-runewidth, go-github-com-mattn-go-isatty, go-github-com-fatih-color, go-github-com-cheggaaa-pb-v3, go-github-com-vividcortex-ewma, and go-github-com-arceliar-ironwood. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: Add go-github-com-arceliar-ironwood.raingloom
* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: Rename go-github-com-cheggaaa-pb to go-github-com-cheggaaa-pb-v3.raingloom
* gnu/packages/golang.scm (go-github-com-cheggaaa-pb): Rename this variable... (go-github-com-cheggaaa-pb-v3): ...to this variable. (go-github-com-cheggaaa-pb): New variable for deprecated package. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: go-github-com-cheggaaa-pb: Update to 3.0.8.raingloom
* gnu/packages/golang.scm (go-github-com-cheggaaa-pb): Update to 3.0.8. [arguments]: Disable tests; update import path. [native-inputs]: Move go-github-com-mattn-go-isatty from here... [propagated-inputs]: ...to here; add go-github-com-vividcortex-ewma and go-github-com-rivo-uniseg. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: Add go-github-com-mattn-go-runewidth.raingloom
* gnu/packages/golang.scm (go-github-com-mattn-go-runewidth): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: Add go-github-com-rivo-uniseg.raingloom
* gnu/packages/golang.scm (go-github-com-rivo-uniseg): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: Add go-github-com-vividcortex-ewma.raingloom
* gnu/packages/golang.scm (go-github-com-vividcortex-ewma): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-01gnu: Add python-mrkd.ZmnSCPxj via Guix-patches via
* gnu/packages/python-xyz.scm (python-mrkd): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: telescope: Update to 0.6.1.cage
* gnu/packages/web-browsers.scm (telescope): Update to 0.6.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01gnu: cl-unix-opts: Update to 0.1.7-1.0e61f34.cage
* gnu/packages/lisp-xyz.scm (sbcl-unix-opts): Update to 0.1.7-1.0e61f34. [source]: Fetch using commit instead of old tag. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>