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2022-01-05gnu: r-sessioninfo: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.2.2.
2022-01-05gnu: r-usethis: Update to 2.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-usethis): Update to 2.1.5.
2022-01-05gnu: r-gert: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gert): Update to 1.5.0.
2022-01-05gnu: r-credentials: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-credentials): Update to 1.3.2.
2022-01-05gnu: r-fs: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-fs): Update to 1.5.2.
2022-01-05gnu: r-sjplot: Update to 2.8.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.10.
2022-01-05gnu: r-emmeans: Update to 1.7.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.2.
2022-01-05gnu: r-multcomp: Update to 1.4-18.Ricardo Wurmus
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-18.
2022-01-05gnu: r-abundant: Update to 1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-abundant): Update to 1.2. [propagated-inputs]: Remove r-quic; add r-glasso.
2022-01-05gnu: r-raster: Update to 3.5-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.5-11.
2022-01-05gnu: r-argparse: Update to 2.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-argparse): Update to 2.1.3.
2022-01-05gnu: r-sjmisc: Update to 2.8.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.9.
2022-01-05gnu: r-rdpack: Update to 2.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.3.
2022-01-05gnu: r-rbibutils: Update to 2.2.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.7.
2022-01-05gnu: r-renv: Update to 0.15.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 0.15.0.
2022-01-05gnu: r-dtplyr: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dtplyr): Update to 1.2.0.
2022-01-05gnu: r-openxlsx: Update to 4.2.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.5.
2022-01-05gnu: r-arules: Update to 1.7-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-arules): Update to 1.7-2.
2022-01-05gnu: r-ttr: Update to 0.24.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ttr): Update to 0.24.3.
2022-01-05gnu: r-tinytex: Update to 0.36.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.36.
2022-01-05gnu: r-xfun: Update to 0.29.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.29.
2022-01-05gnu: r-venndiagram: Update to 1.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-venndiagram): Update to 1.7.1.
2022-01-05gnu: r-hardyweinberg: Update to 1.7.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.4. [propagated-inputs]: Add r-nnet.
2022-01-05gnu: r-mice: Update to 3.14.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mice): Update to 3.14.0. [propagated-inputs]: Add r-withr.
2022-01-05gnu: r-broom: Update to 0.7.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.7.11.
2022-01-05gnu: r-rmysql: Update to 0.10.23.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.23.
2022-01-05gnu: r-dimred: Update to 0.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-dimred): Update to 0.2.4. [native-inputs]: Add r-knitr.
2022-01-05gnu: r-progressr: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-progressr): Update to 0.10.0.
2022-01-05gnu: r-suppdists: Update to 1.1-9.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-suppdists): Update to 1.1-9.7.
2022-01-05gnu: r-pkgload: Update to 1.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.4.
2022-01-05gnu: r-pkgbuild: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.3.1.
2022-01-05gnu: r-glue: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): Update to 1.6.0.
2022-01-05gnu: r-ape: Update to 5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ape): Update to 5.6.
2022-01-05gnu: r-shadowtext: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.0.
2022-01-05gnu: r-ggpmisc: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.5.
2022-01-05gnu: r-ggpp: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.3.
2022-01-05gnu: r-v8: Update to 4.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.0.0.
2022-01-05gnu: r-rticles: Update to 0.22.Ricardo Wurmus
* gnu/packages/cran.scm (r-rticles): Update to 0.22.
2022-01-05gnu: r-datawizard: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.2.
2022-01-05gnu: r-brio: Update to 1.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-brio): Update to 1.1.3.
2022-01-05gnu: r-httpuv: Update to 1.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.4. * gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Adjust to version 1.6.4.
2022-01-05gnu: Add r-densestbayes.Ricardo Wurmus
* gnu/packages/cran.scm (r-densestbayes): New variable.
2022-01-05gnu: Add r-matrixextra.Ricardo Wurmus
* gnu/packages/cran.scm (r-matrixextra): New variable.
2022-01-05gnu: r-activedriverwgs: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
2022-01-05gnu: r-activedriverwgs: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2. [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
2022-01-05gnu: r-valr: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer.
2022-01-05gnu: r-openssl: Use openssl instead of libressl.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl)[arguments]: Add phase to disable versioned linking. [inputs]: Replace libressl with openssl.
2022-01-05gnu: r-openssl: Update to 1.4.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.6.
2022-01-05guix/upstream: Let changed-inputs support the new input lists.Ricardo Wurmus
* guix/upstream.scm (changed-inputs): Add match clauses for new-style input lists.
2022-01-05tests: Add failing tests for changed-inputs on new style inputs.Ricardo Wurmus
* tests/upstream.scm ("changed-inputs returns changes to plain input list", "changed-inputs returns changes to all plain input lists"): New tests.
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