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2020-05-19gnu: sra-tools: Update to 2.10.6....* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.10.6. [arguments]: Replace CC variable in utf8proc Makefile. [inputs]: Replace hdf5 with hdf5-1.10; add python-wrapper. Ricardo Wurmus
2020-05-19gnu: ncbi-vdb: Update to 2.10.6....* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.10.6. Ricardo Wurmus
2020-05-19gnu: ngs-sdk: Update to 2.10.5....* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.10.5. Ricardo Wurmus
2020-05-19gnu: Add emacs-plantuml-mode....* gnu/packages/emacs-xyz.scm (emacs-plantuml-mode): New variable. Clément Lassieur
2020-05-19gnu: Add granite....* gnu/packages/pantheon.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Ryan Prior
2020-05-19gnu: grub: Allow a PNG image and replace "aspect-ratio" with "resolution"....* gnu/bootloaders/grub.scm (<grub-image>): Remove this record and replace it by ... (<grub-theme>)[image]: ... this field with the default from %background-image, (<grub-theme>)[resolution]: ... this field with the defaults from 'width' and 'height' of 'grub-background-image'. (<grub-theme>)[images]: Remove this field. (svg->png): Rename to ... (image->png): ... and use 'copy-file' instead of 'svg->png', if the suffix of the image file is not ".svg". (grub-background-image): Remove the arguments 'width' and 'height'. (grub-theme-image): Add function. (grub-theme-resolution): Add function. (grub-theme-gfxmode): Add function. (grub-image): Remove function. (grub-image?): Remove function. (grub-image-aspect-ratio): Remove function. (grub-image-file): Remove function. (grub-theme-images): Remove function. (%default-theme): Remove variable. (%background-image): Remove variable. Using image formats different to SVG was not possible. For a <grub-image> to be chosen, the 'aspect-ratio' of it had to be 4/3, as the resolution of any image was defaulting to 1024 x 768. There was no code to determine the proper boot-resolution to make any use of a list of images with different aspect-ratios. It seems to be a better solution to only define a single image with any format, and use a given resolution only for the conversion from a SVG file. This also makes the use of a special <grub-image> record unnecessary. Moving the default values from '%background-image' and '%default-theme' into <grub-theme> makes a customisation easier without (inherit) and allows to remove the undocumented variables %background-image' and '%default-theme'. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Stefan
2020-05-18gnu: svt-av1: Update to 0.8.3....* gnu/packages/video.scm (svt-av1): Update to 0.8.3. Leo Famulari
2020-05-18gnu: emacs-elpher: Update to 2.7.4....* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 2.7.4. [home-page, source]: Use new upstream URIs. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Simon South
2020-05-18gnu: python-mpsse: Update to 1.4.1....Follow-up to a7b20226b2bf1a73b8f0f6536e7fa43326f35e33. * gnu/packages/embedded.scm (python-libmpsse): Update to 1.4.1. Danny Milosavljevic
2020-05-18gnu: Add superstarfighter....* gnu/packages/games.scm (superstarfighter): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Timotej Lazar
2020-05-18gnu: godot: Install provided .desktop file and icons....* gnu/packages/game-development.scm (godot)[arguments]: Install the provided godot.desktop instead of creating a new one. Copy icons to the correct location in share/icons/hicolor as per XDG. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Timotej Lazar
2020-05-18gnu: godot: Build and install the headless version....* gnu/packages/game-development.scm (godot): Build the headless (server) binary. This is needed to package games using Godot without depending on X. [outputs]: Add "headless". [arguments]<#:phases>[build-headless]: New phase. [arguments]<#:phases>[install]: Install headless version to separate output. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Timotej Lazar
2020-05-18gnu: godot: Remove obsolete workaround for aarch64....* gnu/packages/game-development.scm (godot)[arguments]: Remove -DNO_THREADS from scons-flags as Godot now builds and runs without it on aarch64. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Timotej Lazar
2020-05-18gnu: godot: Enable release build....* gnu/packages/game-development.scm (godot)[arguments]: Set release_debug target in #:scons-flags to enable optimized build. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Timotej Lazar
2020-05-18build-system/guile: Expose #:scheme-file-regexp....* guix/build-system/guile.scm (%scheme-file-regexp): New variable. (guile-build): Accept #:scheme-file-regexp and pass it on to builder. Alex Sassmannshausen
2020-05-18gnu: guile-config: Update to 0.4.1....* gnu/packages/guile-xyz.scm (guile-config): Update to 0.4.1. Alex Sassmannshausen
2020-05-18guix describe: Add '--list-formats'...* guix/scripts/describe.scm (%available-formats): New variable. (list-formats): New procedure. (%options, show-help): Add --list-formats * doc/guix.texi: Add --list-formats Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ekaitz Zarraga
2020-05-18doc: Inherit md5.scm fix in custom 'guile-lib' variant....* doc/build.scm (guile-lib/htmlprag-fixed)[source]: Remove. [arguments]: Add 'fix-htmlprag' phase. Ludovic Courtès
2020-05-18gnu: dovecot: Update to 2.3.10.1 [security fixes]....Fixes CVE-2020-10957, CVE-2020-10958, and CVE-2020-10967. * gnu/packages/mail.scm (dovecot): Update to 2.3.10.1. Tobias Geerinckx-Rice
2020-05-18gnu: guile-studio: Update to 0.0.2-1.d24d59a....* gnu/packages/guile-xyz.scm (guile-studio): Update to 0.0.2-1.d24d59a. Ricardo Wurmus
2020-05-18gnu: guile-studio: Build with Guile 3.0....* gnu/packages/guile-xyz.scm (guile-studio)[inputs]: Replace guile-2.2 with guile-3.0. Ricardo Wurmus
2020-05-18gnu: ikiwiki: Add missing input....* gnu/packages/web.scm (ikiwiki)[inputs]: Add perl-lwpx-paranoidagent. Paul Garlick
2020-05-18gnu: Add perl-lwpx-paranoidagent....* gnu/packages/web.scm (perl-lwpx-paranoidagent): New variable. Paul Garlick
2020-05-18build: minify-build-system: Fail to install empty files....* guix/build/minify-build-system.scm (install): Produce an error if the minified file is zero bytes. Efraim Flashner
2020-05-18gnu: kcachegrind: Update to 19.08.3....* gnu/packages/kde.scm (kcachegrind): Update to 19.08.3. Marius Bakke
2020-05-18gnu: kqtquickcharts: Update to 19.08.3....* gnu/packages/kde.scm (kqtquickcharts): Update to 19.08.3. Marius Bakke
2020-05-18gnu: kpmcore: Update to 4.1.0....* gnu/packages/patches/kpmcore-fix-tests.patch, gnu/packages/patches/kpmcore-remove-broken-test.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/kde.scm (kpmcore): Update to 4.1.0. [source](patches): Remove. Marius Bakke
2020-05-18gnu: qca: Update to 2.3.0....* gnu/packages/kde.scm (qca): Update to 2.3.0. Marius Bakke
2020-05-18gnu: libkomparediff2: Update to 19.08.3....* gnu/packages/kde.scm (libkomparediff2): Update to 19.08.3. Marius Bakke
2020-05-18gnu: krita: Update to 4.2.9....* gnu/packages/kde.scm (krita): Update to 4.2.9. [arguments]: Add special configure flag for OPENEXR instead of ILMBASE. Marius Bakke
2020-05-18gnu: kdiagram: Update to 2.7.0....* gnu/packages/kde.scm (kdiagram): Update to 2.7.0. Marius Bakke
2020-05-18gnu: CUPS: Inherit replacement from cups-minimal....* gnu/packages/cups.scm (cups): Use PACKAGE/INHERIT. [replacement]: Remove. (cups-2.3.3): Remove variable. Marius Bakke
2020-05-17gnu: mu: Update to 1.4.6....* gnu/packages/mail.scm (mu): Update to 1.4.6. Tobias Geerinckx-Rice
2020-05-17gnu: julia: Specify correct llvm version....* gnu/packages/julia.scm (julia)[arguments]: Adjust configure-flag to specify the correct llvm version. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> nixo
2020-05-17gnu: elfutils: Skip tests on powerpc....* gnu/packages/elf.scm (elfutils)[arguments]: Skip tests on powerpc. Efraim Flashner
2020-05-17gnu: gsl: Disable failing tests on powerpc....* gnu/packages/maths.scm (gsl)[arguments]: Skip the same set of tests on powerpc as skipped on aarch64. Efraim Flashner
2020-05-17gnu: valgrind: Fix build on powerpc....* gnu/packages/valgrind.scm (valgrind)[arguments]: Add make-flags for CPU optimizations when building on powerpc. Efraim Flashner
2020-05-17gnu: knot: Update to 2.9.4....* gnu/packages/dns.scm (knot): Update to 2.9.4. Tobias Geerinckx-Rice
2020-05-17gnu: burp: Update to 2.3.26....* gnu/packages/backup.scm (burp): Update to 2.3.26. Tobias Geerinckx-Rice
2020-05-17gnu: guile-config: Update to 0.4.0....* gnu/packages/guile-xyz.scm (guile-config): Update to 0.4.0. Alex Sassmannshausen
2020-05-17gnu: lm-sensors: Patch references to ‘egrep’....* gnu/packages/linux.scm (lm-sensors)[arguments]: Patch unqualified references to ‘egrep’ as well as ‘grep’. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr> Nicolò Balzarotti
2020-05-17gnu: sane-backends-minimal: Update to 1.0.30 [Epson security fixes]....Fixes CVE-2020-12867 (GHSL-2020-075), CVE-2020-12862 (GHSL-2020-082), CVE-2020-12863 (GHSL-2020-083), CVE-2020-12865 (GHSL-2020-084), and several other memory management bugs. Mitigates CVE-2020-12866 (GHSL-2020-079), CVE-2020-12861 (GHSL-2020-080), and CVE-2020-12864 (GHSL-2020-081). * gnu/packages/scanner.scm (sane-backends-minimal): Update to 1.0.30. Tobias Geerinckx-Rice
2020-05-17gnu: Add bombadillo....gnu/packages/web-browsers.scm (bombadillo): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> B. Wilson
2020-05-17etc: Install mount unit only if it exists....This follows up on 1a1faa78b0498fbb71f1533beb4b65817c1d3f2a, and avoids the (non-fatal) error seen in <https://issues.guix.gnu.org/41356>. /gnu/store will remain writable on new foreign distribution installations until the next release. * etc/guix-install.sh (sys_enable_guix_daemon): Check for ‘gnu-store.mount’ presence before trying to cp it. Update forgotten copyright header. Tobias Geerinckx-Rice
2020-05-17gnu: cups: Update to 2.3.3 [fixes CVE-2020-3898 & CVE-2019-8842]....* gnu/packages/cups.scm (cups-minimal, cups)[replacement]: New fields. (cups-minimal-2.3.3, cups-2.3.3): New public variables. Tobias Geerinckx-Rice
2020-05-17gnu: acpica: Drop Texinfo @dfn{} usage....* gnu/packages/admin.scm (acpica)[description]: Substitute @acronym{} for @dfn{}. Tobias Geerinckx-Rice
2020-05-17gnu: acpica: Fix typo in synopsis....* gnu/packages/admin.scm (acpica)[synopsis]: Fix typo or grammar. Tobias Geerinckx-Rice
2020-05-17gnu: acpica: Update to 20200430....* gnu/packages/admin.scm (acpica): Update to 20200430. Tobias Geerinckx-Rice
2020-05-17gnu: kdeconnect: Fix kdeconnectd path....* gnu/packages/kde.scm (kdeconnect)[arguments]: Add configure-flag to set libexec as a top-level directory in the output. Efraim Flashner
2020-05-17gnu: racket: Update to 7.7....* gnu/packages/scheme.scm (racket): Update to 7.7. Pierre Neidhardt