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2019-12-13gnu: Add r-abcrlda.Ricardo Wurmus
* gnu/packages/cran.scm (r-abcrlda): New variable.
2019-12-13gnu: Add r-abcdefba.Ricardo Wurmus
* gnu/packages/cran.scm (r-abcdefba): New variable.
2019-12-13gnu: Add r-rglpk.Ricardo Wurmus
* gnu/packages/cran.scm (r-rglpk): New variable.
2019-12-13gnu: Add r-abcadm.Ricardo Wurmus
* gnu/packages/cran.scm (r-abcadm): New variable.
2019-12-13gnu: Add r-abc-rap.Ricardo Wurmus
* gnu/packages/cran.scm (r-abc-rap): New variable.
2019-12-13gnu: Add r-abacus.Ricardo Wurmus
* gnu/packages/cran.scm (r-abacus): New variable.
2019-12-13gnu: r-shiny: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0. [arguments]: Update list of JavaScript files to replace. [propagated-inputs]: Add r-fastmap.
2019-12-13gnu: Add r-fastmap.Ricardo Wurmus
* gnu/packages/cran.scm (r-fastmap): New variable.
2019-12-13gnu: Add r-aasea.Ricardo Wurmus
* gnu/packages/cran.scm (r-aasea): New variable.
2019-12-13gnu: Add r-networkd3.Ricardo Wurmus
* gnu/packages/cran.scm (r-networkd3): New variable.
2019-12-13gnu: Add r-bios2cor.Ricardo Wurmus
* gnu/packages/cran.scm (r-bios2cor): New variable.
2019-12-13gnu: Add r-bio3d.Ricardo Wurmus
* gnu/packages/cran.scm (r-bio3d): New variable.
2019-12-13gnu: r-desolve: Update description.Ricardo Wurmus
* gnu/packages/cran.scm (r-desolve)[description]: Use texinfo syntax.
2019-12-13gnu: imlib2: Update to 1.6.1.Efraim Flashner
* gnu/packages/image.scm (imlib2): Update to 1.6.1.
2019-12-13gnu: emacs-telega: Correct path coding for `ffmpeg`.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-telega)[arguments]: Continuation of the previous patch. Adds a hard-coded path from NAME `ffmpeg-bin` to work around issue of ffmpeg not being found on the system PATH.
2019-12-13gnu: emacs-telega: Patch `ffplay` instead of propagating.Leo Prikler
* gnu/packages/emacs-xyz.scm (emacs-telega) [phases]: <telega-data-patch>: Rename to telega-paths-patch. <telega-paths-patch>: Substitute ffplay path for patching. [propagated-inputs] <ffmpeg>: Remove. [inputs] <ffmpeg>: Add. Fixes: #38590 <https://bugs.gnu.org/38590> Signed-off-by: Brett Gilio <brettg@posteo.net> Co-authored-by: Brett Gilio <brettg@posteo.net>
2019-12-13gnu: guile-next: Update to 2.9.7.Ludovic Courtès
* gnu/packages/guile.scm (guile-next): Update to 2.9.7.
2019-12-13gnu: hdf5@1.10: Update to 1.10.5.Ludovic Courtès
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13import: utils: Update docstring of 'recursive-import'.Ludovic Courtès
This is a followup to 70a8e13277d4a44b89dd9ee2290b98105f0235f1. * guix/import/utils.scm (recursive-import): Update docstring.
2019-12-13gnu: python-yapf: Update to 0.29.0.Brett Gilio
* gnu/packages/python-xyz.scm (python-yapf): Update to 0.29.0.
2019-12-13gnu: python-blessings: Update comment on test suite.Brett Gilio
* gnu/packages/terminals.scm (python-blessings): Test suite has been revised. [arguments]: Change comment to reflect change in test suite regarding TTY. [native-inputs]: Pass python-six, which is required for test suite.
2019-12-13gnu: python-blessings: Update to 1.7.Brett Gilio
* gnu/packages/terminals.scm (python-blessings): Update to 1.7.
2019-12-13gnu: python-semver: Adjust indentation.Brett Gilio
* gnu/packages/python-xyz.scm (python-semver): Adjust indentation.
2019-12-13gnu: python-semver: Do not patch virtualenv for tests.Brett Gilio
* gnu/packages/python-xyz.scm (python-semver)[arguments]: The substitution case for patching virtualenv versioning is no longer requireed.
2019-12-13gnu: python-semver: Update to 2.9.0.Brett Gilio
* gnu/packages/python-xyz.scm (python-semver): Update to 2.9.0.
2019-12-13gnu: certbot: Update to 1.0.0.Brett Gilio
* gnu/packages/tls.scm (certbot): Update to 1.0.0.
2019-12-13gnu: python-acme: Update to 1.0.0.Brett Gilio
* gnu/packages/tls.scm (python-acme): Update to 1.0.0.
2019-12-13doc: Link to "Building from Git" instead of quoting command to build Guix.Pierre Neidhardt
* doc/contributing.texi (Submitting Patches): Remove example. Add link to "Building from Git" section.
2019-12-12gnu: emacs-telega: Add MP4/GIF support.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-telega)[propagated-inputs]: Pass ffmpeg in propagated-inputs to support playback of inline MP4 and GIF files.
2019-12-12gnu: emacs-telega: Update to 0.5.2-2.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.2-2. Adds support for I18N.
2019-12-12gnu: emacs-telega: Modify description.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-telega)[description]: Modify the description to be easier to read.
2019-12-12gnu: emacs-telega: Add sticker support.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-telega)[propagated-inputs]: Add libwebp to the propagated-inputs in order to emit stickers properly.
2019-12-13emacs-build-system: Ensure the core libraries appear last in the load path.Maxim Cournoyer
Fixes bug #38568 (see: https://bugs.gnu.org/38568). * guix/build/emacs-build-system.scm (add-source-to-load-path): Ensure the core libraries appear last in the load path. Reported-by: Jelle Licht <jlicht@fsfe.org>
2019-12-12gnu: emacs-telega: Update to 0.5.2.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.2.
2019-12-12gnu: guix-data-service: Update to 0.0.1-7.156b7ee.Christopher Baines
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-7.156b7ee. [arguments]: Add guix-data-service-manage-build-servers to the list of scripts.
2019-12-12gnu: coq: Split coqide.Julien Lepiller
* gnu/packages/coq.scm (coq)[outputs]: Add "ide" output.
2019-12-12news: Add 'de' translation.Florian Pelz
* etc/news.scm: Add 'de' translation.
2019-12-12news: Add entry for "guix challenge --diff".Ludovic Courtès
* etc/news.scm: Add entry for "guix challenge --diff".
2019-12-12challenge: Support "--diff=diffoscope".Ludovic Courtès
* guix/scripts/challenge.scm (call-with-nar): New procedure. (narinfo-contents): Express in terms of 'call-with-nar'. (call-with-mismatches, report-differing-files/external): New procedures. (%diffoscope-command): New variable. (%options): Support "diffoscope" and a string starting with "/". * tests/challenge.scm (call-mismatch-test): New procedure. ("differing-files"): Rewrite in terms of 'call-mismatch-test'. ("call-with-mismatches"): New test. * doc/guix.texi (Invoking guix challenge): Document it.
2019-12-12challenge: Add "--diff".Ludovic Courtès
* guix/scripts/challenge.scm (dump-port*): New variable. (archive-contents, store-item-contents, narinfo-contents) (differing-files, report-differing-files): New procedures. (summarize-report): Add #:report-differences and call it. (show-help, %options): Add "--diff". (%default-options): Add 'difference-report' key. (report-differing-files): Parameterize CURRENT-TERMINAL-COLUMNS and pass #:report-differences to 'summarize-report'. * guix/tests/http.scm (%local-url): Add optional argument. (call-with-http-server): Fix docstring typo. * tests/challenge.scm (query-path-size, make-narinfo): New procedures. ("differing-files"): New test. * doc/guix.texi (Invoking guix challenge): Document "--diff".
2019-12-12progress: Add 'progress-report-port'.Ludovic Courtès
* guix/scripts/substitute.scm (progress-report-port): Move to... * guix/progress.scm (progress-report-port): ... here. New procedure.
2019-12-12serialization: Remove unused procedure.Ludovic Courtès
* guix/serialization.scm (write-contents): Remove.
2019-12-12challenge: Report the best narinfo URI.Ludovic Courtès
* guix/scripts/substitute.scm (select-uri): Rename to... (narinfo-best-uri): ... this, and make public. Update callers. * guix/scripts/challenge.scm (summarize-report): Use 'narinfo-best-uri' instead of (first (narinfo-uris ...)).
2019-12-12guix archive: Add '--list'.Ludovic Courtès
* guix/scripts/archive.scm (show-help, %options): Add '--list'. (list-contents): New procedure. (guix-archive): Honor the '--list' option. * tests/guix-archive.sh: Test it. * doc/guix.texi (Invoking guix archive): Document it.
2019-12-12serialization: Add 'fold-archive'.Ludovic Courtès
* guix/serialization.scm (read-contents): Remove. (read-file-type, fold-archive): New procedures. (restore-file): Rewrite in terms of 'fold-archive'. * tests/nar.scm ("write-file-tree + fold-archive") ("write-file-tree + fold-archive, flat file"): New tests.
2019-12-12linux-boot: Don't ignore flags when mounting root file system.Guillaume Le Vaillant
* gnu/build/linux-boot.scm (mount-root-file-system): Add the 'flags' keyword argument and use it when mounting the root file system. (boot-system): Pass the root file system flags to 'mount-root-file-system'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-12gnu: wireguard: Update to 0.0.20191212.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20191212.
2019-12-12gnu: iptables: Update to 1.8.4.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (iptables): Update to 1.8.4.
2019-12-12gnu: nftables: Update to 0.9.3.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (nftables): Update to 0.9.3.
2019-12-12gnu: nftables: Prefer mirror://netfilter sources.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (nftables)[source]: Add a mirror:// URI.
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