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2021-08-01Merge branch 'master' into core-updates-frozenMarius Bakke
2021-07-31gnu: glib-networking: Skip failing test....* gnu/packages/patches/glib-networking-gnutls-binding.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (glib-networking)[source]: Use it. Ludovic Courtès
2021-07-31gnu: gnutls: Patch the Guile bindings for EINTR/EAGAIN handling....* gnu/packages/patches/gnutls-guile-eintr-eagain.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (gnutls)[source]: Use it. Ludovic Courtès
2021-07-29Merge branch 'master' into core-updates-frozen... Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm Marius Bakke
2021-07-29gnu: julia-tracker: Patch for julia-1.6....* gnu/packages/julia-xyz.scm (julia-tracker)[source]: Add patch. * gnu/packages/patches/julia-tracker-16-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2021-07-31gnu: racket: Unbundle racket-minimal....This change takes advantage of improved support for layered and tethered installations in Racket 8.2. * gnu/packages/racket.scm (extend-layer): New private variable. This is a script for configuring a new config-tethered layer chaining to an existing Racket installation. * gnu/packages/racket.scm (racket)[source](snippet): Unbundle `racket-minimal`. [inputs]: Remove inputs that properly belong to `racket-minimal`. [native-inputs]: Add `racket-minimal` and `extend-layer`. [arguments]: Stop inheriting from `racket-minimal`. Add phase 'unpack-packages to move the sources and links file into place. Replace 'configure phase using `extend-layer`. Replace 'build phase using `raco setup`. Delete 'install phase. * gnu/packages/patches/racket-sh-via-rktio.patch: Rename to ... * gnu/packages/patches/racket-minimal-sh-via-rktio.patch: ... this file to placate `guix lint`. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/racket.scm (racket-minimal)[source]: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-07-31gnu: onnx: Change source to 'git-fetch'....* gnu/packages/machine-learning.scm (onnx)[source]: Change to 'git-fetch'. Add "onnx-skip-model-downloads.patch". [arguments]: Add 'make-test-directory-writable' phase. * gnu/packages/patches/onnx-skip-model-downloads.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-07-31gnu: python-onnx: Rename to "onnx"....* gnu/packages/machine-learning.scm (python-onnx): Rename to... (onnx): ... this, and change 'name' field accordingly. (python-onnx): New variable. * gnu/packages/patches/python-onnx-shared-libraries.patch: Rename to... * gnu/packages/patches/onnx-shared-libraries.patch: ... this. * gnu/packages/patches/python-onnx-use-system-googletest.patch: Rename to... * gnu/packages/patches/onnx-use-system-googletest.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
2021-07-31gnu: python-onnx: Install libonnx.so and libonnx_proto.so....* gnu/packages/patches/python-onnx-shared-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/machine-learning.scm (python-onnx)[source]: Use it. [arguments]: New field. Ludovic Courtès
2021-07-29gnu: Add drpm....* gnu/packages/rpm.scm: Add file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it. Maxim Cournoyer
2021-07-29gnu: Add XNNPACK....* gnu/packages/machine-learning.scm (xnnpack): New variable. * gnu/packages/patches/xnnpack-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-07-29gnu: Add FP16....* gnu/packages/patches/fp16-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (fp16): New variable. Ludovic Courtès
2021-07-29gnu: Add cpuinfo....* gnu/packages/parallel.scm (cpuinfo): New variable. * gnu/packages/patches/cpuinfo-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-07-29gnu: Add pthreadpool....* gnu/packages/parallel.scm (pthreadpool): New variable. * gnu/packages/patches/pthreadpool-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-07-29gnu: Add FXDiv....* gnu/packages/maths.scm (fxdiv): New variable. * gnu/packages/patches/fxdiv-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-07-25gnu: Add marble-qt....* gnu/packages/patches/marble-qt-add-qt-headers.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/geo.scm (marble-qt): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Wiktor Żelazny
2021-07-24gnu: esmtp: Fix build with libesmtp >= 1.1.0....* gnu/packages/mail.scm (esmtp)[source]: Add patch. * gnu/packages/patches/esmtp-add-lesmtp.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-07-24gnu: glibc: Remove versions 2.27 and 2.28....* gnu/packages/base.scm (glibc-2.28, glibc-2.27): Remove. * gnu/packages/patches/glibc-2.27-git-fixes.patch, gnu/packages/patches/glibc-2.27-supported-locales.patch, gnu/packages/patches/glibc-2.28-git-fixes.patch, gnu/packages/patches/glibc-2.28-supported-locales.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
2021-07-23gnu: libxml2: Update to 2.9.12....* gnu/packages/patches/libxml2-parent-pointers.patch, gnu/packages/patches/libxml2-terminating-newline.patch, gnu/packages/patches/libxml2-xpath-recursion-limit.patch: New files. * gnu/packages/patches/python-libxml2-python39-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/xml.scm (libxml2): Update to 2.9.12. (python-lxml)[source](modules, snippet): New fields. Marius Bakke
2021-07-23gnu: binutils: Update to 2.37....* gnu/packages/patches/binutils-loongson-workaround.patch: Adjust for upstream changes. * gnu/packages/patches/binutils-libiberty-endianness-bug.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (binutils): Update to 2.37. [source](patches): Remove obsolete patch. Marius Bakke
2021-07-23gnu: Perl: Update cross-compilation code....* gnu/packages/perl.scm (perl)[native-inputs]: Update "perl-cross" to 1.3.6. [arguments]: Remove obsolete patch. * gnu/packages/patches/perl-cross.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2021-07-22gnu: Add drawterm....* gnu/packages/plan9.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. 宋文武
2021-07-21gnu: glibc-2.31: Restore patches....Commit 87961fc965b96ac0c7a5909ac2faab2d023b5339 inadvertently modified the patch set for glibc-2.31. This change restores the original patch set. Fixes: <https://bugs.gnu.org/49516>. * gnu/packages/base.scm (glibc-2.31) [source]: Use the same patches as glibc, but replace glibc-hurd-clock_gettime_monotonic.patch with glibc-2.31-hurd-clock_gettime_monotonic.patch, and add glibc-hurd-signal-sa-siginfo.patch. * gnu/packages/patches/glibc-2.31-hurd-clock_gettime_monotonic.patch: Add it. * gnu/packages/patches/glibc-hurd-signal-sa-siginfo.patch: Add it. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Chris Marusich
2021-07-21gnu: biber: Update to 2.16....* gnu/packages/tex.scm (biber): Update to 2.16. [source]: Remove 'patches'. [inputs]: Add 'perl-io-string', 'perl-parse-recdescent', and 'perl-unicode-collate' (upstream appears to have fixed the issue initially mentioned as a comment: recent issue was closed after telling user to use perl-unicode-collate 1.29, which is the one available; see <https://github.com/plk/biber/issues/378>.) * gnu/packages/patches/biber-fix-encoding-write.patch, gnu/packages/patches/biber-sortinithash.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Nathan Benedetto Proença
2021-07-19gnu: Add node-uglify-js....* gnu/packages/uglifyjs.scm (node-uglify-js, uglifyjs): New variables. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Charles
2021-07-18Merge branch 'master' into core-updatesLudovic Courtès
2021-07-16gnu: Add transmission-remote-gtk....* gnu/packages/bittorrent.scm (transmission-remote-gtk): New variable. * gnu/packages/patches/transmission-remote-gtk-fix-appstream.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Leo Famulari <leo@famulari.name> Justin Veilleux
2021-07-16gnu: Add ark....* gnu/packages/kde-utils.scm (ark): New variable. * gnu/packages/patches/ark-skip-xar-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Z572
2021-07-12gnu: proot: Update to 5.2.0-alpha....This allows proot to be built for aarch64-linux and armhf-linux. * gnu/packages/patches/proot-test-fhs.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Un-register it. * gnu/packages/linux.scm: Update to 5.2.0-alpha. [patches]: Remove field. [supported-system]: New field. [tests?]: Disable for ARM-based systems. [phases]{fix-fhs-assumptions-in-tests, set-shell-file-name}: Combine into... {patch-sources}: ... this new phase. {build-manpage}: New phase. {check}: Add seccomp issue URL in comment. [native-inputs]: Add coreutils issue URL in comment. Add pkg-config and python-docutils. [inputs]: Add libarchive. Maxim Cournoyer
2021-07-11gnu: fontconfig: Use (locally) deterministic caching...Make fontconfig use directory contents rather than modification time to determine cache validity (by pretending that mtime is broken). * gnu/packages/patches/fontconfig-cache-ignore-mtime.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/fontutils.scm (fontconfig)[source]: Use it. [arguments]: Unset SOURCE_DATE_EPOCH for tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sarah Morgensen
2021-07-10gnu: coreutils: Patch broken Gnulib tests....Fixes <https://bugs.gnu.org/49459>. * gnu/packages/patches/coreutils-gnulib-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (coreutils)[source]: Use it. Ludovic Courtès
2021-07-09gnu: Add emacs-telega-server....* gnu/packages/emacs-xyz.scm (emacs-telega-server): New variable. * gnu/packages/patches/emacs-telega-path-placeholder.patch: New file. * gnu/package/patches/emacs-telega-patch-server-functions.patch: Remove stale patch. * gnu/local.mk (dist_patch_DATA): Update accordingly. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Zhu Zihao
2021-07-09gnu: python-seaborn: Update to 0.11.1....* gnu/packages/patches/python-seaborn-kde-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to 0.11.1. Ludovic Courtès
2021-07-08gnu: glibc: Fix cross-compilation to powerpc64le-linux-gnu....Fixes <https://bugs.gnu.org/49417>. Reported by Maxime Devos <maximedevos@telenet.be>. * gnu/packages/patches/glibc-cross-objcopy.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc)[source]: Use it. Ludovic Courtès
2021-07-07gnu: VTK 8: Re-fix a build failure with recent versions of freetype....* gnu/packages/patches/vtk-8-fix-freetypetools-build-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image-processing.scm (vtk-8): Dis-inherit from VTK. Use the package definition that predated the update to VTK 9, taken from commit f4dc8ac6dfa036d98aa0990ae22268a9650899d0. Leo Famulari
2021-07-06gnu: Add ytfzf....* gnu/packages/image-viewers.scm (ytfzf): New variable. Co-authored-by: jgart <jgart@dismail.de> Raghav Gururajan
2021-07-04gnu: glibc: Fix cross-compilation to aarch64-linux-gnu....Fixes <https://bugs.gnu.org/49113>. Reported by Maxime Devos <maximedevos@telenet.be>. Previously, the cross-compiled libc.so linker script would read: OUTPUT_FORMAT(elf64-little) instead of: OUTPUT_FORMAT(elf64-littleaarch64) This is because glibc 2.33 runs "objdump -f" instead of "aarch64-linux-gnu-objdump -f" to determine the output format. * gnu/packages/patches/glibc-cross-objdump.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc)[source]: Use it. Ludovic Courtès
2021-07-04gnu: libgrss: Fix CVE-2016-20011....* gnu/packages/gnome.scm (libgrss): Add patch. * gnu/packages/patches/libgrss-CVE-2016-2001.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-06-30gnu: tor: Update to 0.4.6.6....* gnu/packages/tor.scm (tor): Update to 0.4.6.6. [source]: Remove patch. * gnu/packages/patches/tor-fix-build-with-gcc-7.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-06-28Revert "gnu: Add ytfzf."...This reverts commit 3fdb2d679259f5d1541240dd4e9cedda17040bf2, as it was accidentally pushed. Raghav Gururajan
2021-06-28gnu: Add ytfzf....* gnu/packages/image-viewers.scm (ytfzf): New variable. Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name> Co-authored-by: jgart <jgart@dismail.de> LibreMiami
2021-06-28gnu: Add go-1.16....Add go@1.16 as a non-default go. Changes from 1.14: Use now-supported GO_LDSO configuration option for setting the interpreter. Bootstrap with gccgo on platforms which do not support go-1.4. Fix and re-enable cmd/go script tests. Fix typo in cgoldflags patch. Break out tests into "check" phase. Remove references to perl to reduce closure size by ~10%. Set GOCACHE so go doesn't attempt to access $HOME. * gnu/packages/patches/go-fix-script-tests.patch: New file. * local.mk (dist_patch_DATA): Register it. * gnu/packages/golang.scm (go-1.16): New variable. Use the patch. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Sarah Morgensen
2021-06-28gnu: Add oneko....* gnu/packages/toys.scm (oneko): New variable. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Timotej Lazar
2021-06-25gnu: connman: Update to 1.40....* gnu/packages/connman.scm (connman): Update to 1.40. [source]: Remove upstreamed patch. [inputs]: Add lz4, rather than propagate it from openconnect. * gnu/packages/patches/connman-CVE-2021-33833.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-06-24gnu: Add cl-nst....Initiate new lisp-check module the same way as other language specific ones (python-check, haskell-check). * gnu/local.mk (GNU_SYSTEM_MODULES): Add lisp-check.scm. * gnu/packages/lisp-check.scm (sbcl-nst, ecl-nst, cl-nst): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Sharlatan Hellseher
2021-06-23gnu: Remove dead cups-CVE-2020-10001.patch....* gnu/packages/patches/cups-CVE-2020-10001.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-06-23Merge branch 'master' into core-updates...Conflicts: gnu/packages/cups.scm gnu/packages/python-web.scm gnu/packages/web.scm guix/build/maven/pom.scm Tobias Geerinckx-Rice
2021-06-23gnu: cups: Add replacement to fix CVE-2020-10001....* gnu/packages/patches/cups-CVE-2020-10001.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cups.scm (cups-minimal/fixed): New variable. (cups-minimal)[replacement]: Assign it to new field. Tobias Geerinckx-Rice
2021-06-21gnu: Add tlf....* gnu/packages/patches/tlf-support-hamlib-4.2+.patch: New file. * gnu/local.mk: Add it. * gnu/packages/radio.scm (tlf): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Jack Hill
2021-06-20gnu: linkchecker: Update to 10.0.1....* gnu/packages/web.scm (linkchecker): Update to 10.0.1. [source]: Remove patches. [inputs]: Add python-beautifulsoup4. Replace python2-dnspython-1.16, python2-pyxdg and python2-requests with python-dnspython, python-pyxdg and python-requests respectively. [native-inputs]: Replace python2-pytest, python2-miniboa and python2-parameterized with python-pytest, python-miniboa and python-parameterized respectively. [arguments]: Use python 3. Replace check phase instead of deleting the standard phase and adding a custom one. Use add-installed-pythonpath instead of setting PYTHONPATH directly. Support disabling of tests with tests?. [home-page]: Update URI. * gnu/packages/patches/linkchecker-tests-require-network.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. Arun Isaac
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