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2021-05-29gnu: Add mosaicatcher....* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable. Ricardo Wurmus
2021-05-27gnu: lksctp-tools: Update to 1.0.19....* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19. [source]: Remove patch. * gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-26gnu: minimap2: Update to 2.18....* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18. [source]: Remove patch. * gnu/packages/patches/minimap2-aarch64-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-05-25gnu: Remove unnecessary patches for emacs-geiser....* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch: * gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Apply file removal. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Alexandr Vityazev
2021-05-22gnu: autotrace: Prepare for GLib 2.68 and later....* gnu/packages/patches/autotrace-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/graphics.scm (autotrace)[source](patches): New field. Marius Bakke
2021-05-22gnu: libblockdev: Prepare for GLib 2.58....* gnu/packages/patches/libblockdev-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/disk.scm (libblockdev)[source](patches): New field. Marius Bakke
2021-05-22gnu: ucx: Restore (and adapt) ioctl fallback patch....This is a followup to 4ebd4a58ce307874b18c30ffcd4852440e475ad5 which removed the patch, but it was still necessary for some dependents. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx)[source](patches): New field. Marius Bakke
2021-05-21gnu: pinball: Update to 3.1.20201218....* gnu/packages/games.scm (pinball): Update to 3.1.20201218. [source]: Tarballs no longer published on sourceforge, so use git-fetch. [native-inputs]: New field for bootstrapping inputs. [inputs]: Add libltdl. [arguments]: Add custom 'bootstrap' phase. * gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source. * gnu/packages/patches/pinball-const-fix.patch, gnu/packages/patches/pinball-cstddef.patch, gnu/packages/patches/pinball-missing-separators.patch, gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches. * gnu/local.mk (dist_patch_DATA): Remove them. Eric Bavier
2021-05-18gnu: Add libxml2-xpath0....* gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file... * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/xml.scm (libxml2-xpath0): New variable. Signed-off-by: Marius Bakke <marius@gnu.org> David Larsson
2021-05-18gnu: ucx: Update to 1.9.0....* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx): Update to 1.9.0. [source](patches): Remove. Marius Bakke
2021-05-18gnu: rxvt-unicode: Update to 9.26....* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26. [source]: Remove upstreamed patch. * gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-17gnu: disarchive: Fix build when cross-compiling....This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix for i586-pc-gnu (Hurd). * gnu/packages/patches/disarchive-cross-compilation.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/backup.scm (disarchive)[source]: Apply it. [phases]{delete-configure}: New phase. [native-inputs]: Add guile-3.0 and guile-gcrypt. Maxim Cournoyer
2021-05-16gnu: mercurial: Patch to make it read HGEXTENSIONPATH....This will make Mercurial be able to find third-party extensions installed with Guix, without having to set PYTHONPATH. * gnu/packages/patches/mercurial-hg-extension-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Register the patch. * gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the patch. [native-search-paths]: Add HGEXTENSIONPATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-05-15gnu: Graphviz: Fix CVE-2020-18032....* gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/graphviz.scm (graphviz)[replacement]: New field. (graphviz/fixed): New variable. Leo Famulari
2021-05-13gnu: hplip: Update to 3.21.4....* gnu/packages/cups.scm (hplip): Update to 3.21.4. [source]: Remove fussy patch. Replace it with an short snippet substitution and... [arguments]: ...the new "--disable-imageProcessor-build" configure flag. * gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-13gnu: snappy: Update to 1.1.9....* gnu/packages/compression.scm (snappy): Update to 1.1.9. [source]: Add another patch. [arguments]: Add new #:configure-flags and an 'unpack-third_party-subprojects phase. [native-inputs]: Add the sources for benchmark and googletests. * gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-05-11gnu: Add giara....* gnu/packages/syndication.scm (giara): New variable. * gnu/packages/patches/giara-fix-login.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Raghav Gururajan
2021-05-09gnu: ExifTool: Fix CVE-2021-22204...* gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it. Leo Famulari
2021-05-05gnu: Add tla2tools....This introduces tla2tools.jar, which contains the TLA+ model checker and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX typesetting system; PlusCal translator; and more. I have added five wrapper scripts for convenience, rather than invoking `java' manually. The wrapper scripts are not comprehensive; users who are familiar with tla2tools.jar, or have read the book Specifying Systems, may still invoke the commands in the traditional way. The minimum JDK version is 11. I chose to stick with that rather than bumping it to 14 (which is the largest version currently in Guix) because each OpenJDK version in Guix depends on the version before it, and so it needlessly results in many 100s of MiB of unnecessary dependencies. Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used with TLA+. * gnu/packages/java.scm (tla2tools): New variable. * gnu/packages/patches/tla2tools-build-xml.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mike Gerwitz
2021-05-05gnu: racket: Remove obsolete patch....* gnu/packages/racket.scm (racket)[source](patches): Remove "racket-store-checksum-override.patch", which is no longer needed since we stopped injecting store paths into Racket files in commit 834aa48: see <https://issues.guix.gnu.org/47180>. * gnu/packages/patches/racket-store-checksum-override.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-05-05gnu: racket: Move to (gnu packages racket)....* gnu/packages/scheme.scm (racket,racket-minimal): Move to ... * gnu/packages/racket.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/racket.scm (racket)[synopsis]: Tweak. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-05-04gnu: busybox: Update to 1.33.1....* gnu/packages/busybox.scm (busybox): Update to 1.33.1. [source]: Remove upstreamed patch. * gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-01gnu: u-boot: Patch to fix boot regressions for some platforms....The previous workaround stopped the preboot phase from loading USB support, which makes it impossible to use a USB keyboard to select a generation from the boot menu without using a serial console. * gnu/packages/patches/u-boot-rockchip-inno-usb.patch: New File. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/bootloaders.scm (%u-boot-rockchip-inno-usb-patch): New variable. (u-boot)[source]: Add patch. (u-boot-rockpro64-rk3399, u-boot-pinebook-pro-rk3399): Remove obsolete phase. Vagrant Cascadian
2021-05-01gnu: Add emacs-geiser-guile....* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/emacs-xyz.scm (emacs-geiser-guile): New variable. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Morgan Smith
2021-05-01gnu: emacs-geiser: Update to 0.13....* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.13. [source]: Change upstream URL. [build-system]: Change to emacs-build-system. [arguments]: Adjust accordingly. [native-inputs]: Remove emacs, autoconf, and automake. [description]: State that other packages are needed for geiser to be useful. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Morgan Smith
2021-04-28gnu: linux-libre-arm64-generic: Add eDP panel, battery and audio...support for Pinebook Pro. * gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro lcd patch. (linux-libre-arm64-generic): Enable audio and battery modules for Pinebook Pro. * gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. Vagrant Cascadian
2021-04-28gnu: ungoogled-chromium: Update to 90.0.4430.93....* gnu/packages/patches/ungoogled-chromium-system-nspr.patch, gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90. (debian-patch): Make REVISION optional, default to %DEBIAN-REVISION. (%chromium-version): New variable. (%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907. (%debian-revision): Set to debian/90.0.4430.85-1. (%debian-patches): Add more patches; update hashes. (%ungoogled-origin): Update hash. (%guix-patches): Remove obsolete patches. (libvpx/chromium): Update to 1.9.0-147-g61edec1ef. (ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last component of %UNGOOGLED-REVISION, a 'git describe --long' style ID. [arguments]: Add build_with_flite_lib in #:configure-flags. Add openjpeg substitution in #:phases. Marius Bakke
2021-04-28gnu: LLVM, Clang: Add 12.0.0....* gnu/packages/patches/clang-12-tools-extra-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12, clang-toolchain-12): New variables. (llvm-11): Inherit from LLVM-12. Marius Bakke
2021-04-27gnu: gst-plugins-ugly: Fix some out-of-bounds reads....* gnu/packages/patches/gst-plugins-ugly-fix-out-of-bound-reads.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-ugly)[source]: Use it. Leo Famulari
2021-04-27gnu: gst-plugins-base: Fix an invalid read when parsing ID3v2 tags....* gnu/packages/patches/gst-plugins-base-fix-id3v2-invalid-read.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it. Leo Famulari
2021-04-27gnu: gst-plugins-bad: Fix an overflow when processing video files....* gnu/packages/patches/gst-plugins-bad-fix-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-bad)[source]: Use it. Leo Famulari
2021-04-27gnu: gst-libav: Fix a stack corruption bug....* gnu/packages/patches/gst-libav-64channels-stack-corruption.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-libav)[source]: Use it. Leo Famulari
2021-04-27gnu: gst-plugins-good: Fix CVE-2021-3497 and CVE-2021-3498....* gnu/packages/patches/gst-plugins-good-CVE-2021-3497.patch, gnu/packages/patches/gst-plugins-good-CVE-2021-3498.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use them. Leo Famulari
2021-04-27gnu: GIMP: Update to 2.10.24....* gnu/packages/gimp.scm (gimp): Update to 2.10.24. [source]: Remove obsolete patch 'gimp-make-gegl-introspect-optional.patch'. * gnu/packages/patches/gimp-make-gegl-introspect-optional.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2021-04-25gnu: Add python-orange-canvas-core....* gnu/packages/orange.scm: New file. * gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego
2021-04-12gnu: racket: Don't inject store paths into Racket files....Apparently, during grafting, Guix can somehow mangle compiled Racket CS files (.zo) such that Racket will refuse to load them. (Maybe it has something to do with compression?) So, we stop patching Racket sources with absolute paths to store files (i.e. for foreign libraries to dlopen). Instead, we put them in a data file that doesn't get compiled or, in one case, embed it in C. Fixes https://issues.guix.gnu.org/47064 * gnu/packages/patches/racket-sh-via-rktio.patch: New file. Adds a special case at the C level, controlled by a preprocessor macro, to handle attempts to execute "/bin/sh". * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (racket)[source](patches): Apply it. (racket)[arguments](#:configure-flags): Add the CPP flag to enable it. (racket)[arguments](#:modules): Use srfi-1. (racket)[arguments](#:phases): Remove 'patch-/bin/sh and 'pre-configure. Change 'pre-configure-minimal to just change directory. Add 'patch-config.rktd-lib-search-dirs after 'build and before 'install to configure Racket's "lib-search-dirs". (racket, racket-minimal)[inputs]: Add bash-minimal as an explicit input. (racket-minimal)[source]: Adjust to inherit patches from racket. (racket-minimal)[arguments]: Inherit from racket: changes no longer needed. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-04-11gnu: lksctp-tools: Fix build of include file....* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: New file. * gnu/local.mk[patches]: Add it. * gnu/packages/networking.scm(/lksctp-tools)[source]: Use this patch. Hartmut Goebel
2021-04-09gnu: python-pyqt: Fix build for new python-sip....* gnu/packages/qt.scm (python-pyqt) [source]: Remove pyqt-public-sip.patch. [propagated-inputs]: Add python-pyqt5-sip. * gnu/packages/patches/pyqt-public-sip.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Brendan Tildesley
2021-04-05gnu: libvirt: Update to 7.2.0....* gnu/packages/virtualization.scm (libvirt): Update to 7.2.0. [arguemnts]: Switch to meson, only build system supported by upstream. [inputs]: Add libssh2 and readline. [native-inputs]: Add bash-completion, gettext, python-docutils and rpcsvc-proto. * gnu/packages/patches/libvirt-add-install-prefix.patch: New file... * gnu/local.mk: ...add it. * gnu/packages/patches/libvirt-create-machine-cgroup.patch: Delete file, merged by upstream. Tested-by: Pierre Langlois <pierre.langlois@gmx.com> Brice Waegeneire
2021-04-05gnu: chez-scheme: simplify packaging...Take advantage of patches that have been accepted upstream. These changes lay a foundation for reusing more of Chez's build process for Racket. * gnu/packages/patches/chez-scheme-build-util-paths-backport.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/chez.scm (chez-scheme)[source](patches): Use it. [source](snippet): Remove bundled libraries here, not in configure phase. [inputs]: Organize. Move "nanopass", "stex", and "xorg-rgb" to ... [native-inputs]: ... this field. [arguments]: Add (ice-9 ftw) to #:modules. Remove unneeded 'patch-processor-detection' phase. Add 'unpack-nanopass+stex' phase (refactored from 'configure'). Simplify 'configure' phase by removing patches that have been upstreamed. Add "--nogzip-man-pages" flag so we can remove 'make-manpages-writable' phase. Stop ignoring #:configure-flags, move "--threads" there, and remove unneeded workaround. Add 'prepare-stex' phase (refactored from 'install-doc'). Use it to streamline 'install-doc' phase, installing all of the right files into the right places. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Philip McGrath
2021-04-02gnu: runc: Update to 1.0.0-rc93....* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc93. [source]: Remove the patches field. [phases]{unpack}: Remove override. {build}: Add the man target. {check}: Make conditional based on TESTS?. {install}: Add the install-man target. [native-inputs]: Add go-github-com-go-md2man. [home-page]: Update. * gnu/packages/patches/runc-CVE-2019-5736.patch: Delete file. * gnu/local.mk: Un-register it. Maxim Cournoyer
2021-04-02gnu: containerd: Update to 1.4.4....* gnu/packages/docker.scm (containerd): Update to 1.4.4. Delete trailing #t. [arguments]: Set a MAKE-FLAGS binding. [phases]{patch-paths}: Patch the reference to 'unpigz'. {build, install}: Use the MAKE-FLAGS variable. [inputs]: Add pigz. * gnu/packages/patches/containerd-test-with-go1.13.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Un-register it. Maxim Cournoyer
2021-04-02gnu: pidgin: Update to 2.14.2....* gnu/packages/messaging.scm (pidgin): Update to 2.14.2. [source]: Remove pidgin-vv-gst.patch. * gnu/packages/patches/pidgin-vv-gst.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-04-02gnu: curl: Update to 7.76.0 [security fixes]....Fixes CVE-2021-22876 and CVE-2021-22890. * gnu/packages/curl.scm (curl/fixed): New variable. (curl)[replacement]: New field. * gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Léo Le Bouter
2021-04-02gnu: wpa-supplicant-minimal: Fix CVE-2021-30004....* gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/admin.scm (wpa-supplicant-minimal): Apply patch. Léo Le Bouter
2021-04-02gnu: Add llhttp-bootstrap....* gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/node.scm (llhttp-bootstrap): New variable. Jelle Licht
2021-04-02gnu: opendht: Update to 2.2.0rc4....* gnu/packages/patches/opendht-fix-jami.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Un-register it. * gnu/packages/networking.scm (opendht): Update to 2.2.0rc4. [patches]: Remove field. [inputs]: Use nettle-3.7. [native-inputs]: Move restinio to... [propagated-inputs]: ... here. Maxim Cournoyer
2021-04-02Revert "gnu: libvirt: Update to 7.1.0."...The update causes virsh to fail <https://bugs.gnu.org/47541>. This reverts commit 383b02a370252c08eb1d43ac94d659c1d3993a35. Pierre Langlois
2021-04-01gnu: qemu-for-american-fuzzy-lop: Fix build....* gnu/packages/debug.scm (qemu-for-american-fuzzy-lop)[source]: Add patch. * gnu/packages/patches/qemu-glibc-2.30.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2021-04-01gnu: gimp: Ship a copy of the gegl patch....As Ludo' rightly points out, GitHub's patches are probably as stable as their tarballs. * gnu/packages/gimp.scm (gimp)[source]: Use SEARCH-PATCHES instead of an origin. * gnu/packages/patches/gimp-make-gegl-introspect-optional.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
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