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2019-02-14gnu: ruby-safe-yaml: Add missing require 'time'....Patch ruby-safe-yaml to fix an issue that would lead to an error like this: uninitialized constant SafeYAML::Parse::Date::DateTime It's been reported upstream [1], and this patch was taken from the upstream Git repository. 1: https://github.com/dtao/safe_yaml/issues/80 * gnu/packages/ruby.scm (ruby-safe-yaml)[source]: Switch to the Git repository so that applying patches works and add a patch. [arguments]: Enable tests and add a phase to set the TZ environment variable, as one of the tests depends on a certian timezone. * gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patch file. Christopher Baines
2019-02-13gnu: dealii: Upgrade to 9.0.1....* gnu/packages/patches/dealii-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch. [arguments]: Use new MPI configuration flags. Eric Bavier
2019-02-14gnu: qtbase: Restore compilation on linux kernels < 4.11....Fixes <https://bugs.gnu.org/34431>. * gnu/packages/patches/qtbase-old-kernel.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/qt.scm (qtbase): Add patch. Andreas Enge
2019-02-13gnu: scalapack: Remove use of deprecated MPI1 symbols....* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (scalapack)[source]: Use it. Eric Bavier
2019-02-13gnu: ledger: Update to 3.1.2 [security fixes]....* gnu/packages/finance.scm (ledger): Update to 3.1.2. [arguments]: Remove #:modules; remove obsolete configure flags; remove make flags; remove phase "boost-compat"; remove custom check phase; remove "relocate-elisp" phase; disable broken test in "check-setup" phase. [native-inputs]: Remove emacs-minimal. [license]: Remove gpl2+. * gnu/packages/patches/ledger-revert-boost-python-fix.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2019-02-13gnu: red-eclipse: Fix build....Add a patch from the upstream repository [1] that resolves some errors that prevent the package from building [2]. 1: https://github.com/red-eclipse/base/commit/b16b4963c1ad81bb9ef784bc49 2: error: ‘____gammal_r_finite’ was not declared in this scope * gnu/packages/games.scm (red-eclipse)[source] Add patch. * gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch: New file * gnu/local.mk (dist_patch_DATA): Add new patch. Christopher Baines
2019-02-12gnu: Move KDE Plasma components to separate module....* gnu/packages/kde.scm (libkscreen, libksysguard): Move from here ... * gnu/packages/kde-plasma.scm: ... to here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. Marius Bakke
2019-02-12gnu: runc: Update to 1.0.0-rc6 [fixes CVE-2019-5736]....* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc6. [source]: Use a descriptive file-name. Add 'runc-CVE-2019-5736.patch' * gnu/packages/patches/runc-CVE-2019-5736.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Leo Famulari
2019-02-12gnu: glibc@2.27: fix CVE-2018-11236, CVE-2018-11237....* gnu/packages/base.scm (glibc@2.27)[sources]: Add patches. [properties]: New field, mark CVE-2017-18269 fixed. * gnu/packages/patches/glibc-CVE-2018-11236.patch, gnu/packages/patches/glibc-CVE-2018-11237.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner
2019-02-10gnu: gnome-shell: Customize the GDM log-in screen....* gnu/packages/patches/gnome-shell-theme.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gnome-shell)[source](patches, modules) (snippet): New fields. [arguments]: Add 'rebuild-css' phase. [native-inputs]: Add RUBY-SASS. Ludovic Courtès
2019-02-09gnu: emacs-pdf-tools: Update to 0.90....* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90. [source]: Remove patch. * gnu/packages/patches/emacs-pdf-tools-poppler.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove reference to deleted file. Nicolas Goaziou
2019-02-09gnu: libvpx: Update to 1.8.0....* gnu/packages/patches/gst-plugins-good-libvpx-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/video.scm (libvpx): Update to 1.8.0. [source](patches): Remove obsolete patch. (libvpx-1.7): New public variable. * gnu/packages/gnuzilla.scm (icecat)[inputs]: Use LIBVPX-1.7 instead of LIBVPX. * gnu/packages/gstreamer.scm (gst-plugins-good)[source](patches): New field. [arguments]: Add #:make-flags. Marius Bakke
2019-02-09Merge branch 'staging'Ludovic Courtès
2019-02-09gnu: cool-retro-term: Upgrade to 1.1.1....* gnu/packages/terminals.scm (cool-retro-term)[source]: Upgrade to 1.1.1. Remove patches. Adjust filtering in snippet for added/removed fonts. [arguments]: Return #t in 'add-alternate-name' phase. * gnu/packages/patches/cool-retro-term-dont-check-uninit-member.patch, gnu/packages/patches/cool-retro-term-fix-array-size.patch, gnu/packages/patches/cool-retro-term-memory-leak-1.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Eric Bavier
2019-02-07gnu: hdf5: Remove use of deprecated MPI1 symbols....* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch, gnu/packages/patches/hdf5-mpi-deprecations.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them. Eric Bavier
2019-02-07gnu: superlu-dist: Remove use of deprecated MPI1 symbols....* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (superlu-dist)[source]: Use it. Eric Bavier
2019-02-05gnu: musescore: Update to 3.0.2....* gnu/packages/music.scm (musescore): Update to 3.0.2. [source]: Add patch. * gnu/packages/patches/musescore-fix-use_webengine.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference patch. Nicolas Goaziou
2019-02-05gnu: nyx: Update to 2.1.0....* gnu/packages/tor.scm (nyx): Update to 2.1.0. [source]: Remove patch. * gnu/packages/patches/nyx-show-header-stats-with-python3.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2019-02-05gnu: Remove unused patch 'mcron-install.patch'....This is a followup to commit cfbf6de18cc70d2e385feb5f61f9363f18e78ddf. * gnu/packages/patches/mcron-install.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-05gnu: Remove unused patch 'ocaml-graph-honor-source-date-epoch.patch'....This is a followup to commit 564cf93f2aca60171b4b97559ffc6c952e73e8ed. * gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-05gnu: Remove unused patch 'ocaml-findlib-make-install.patch'....This is a followup to commit bff6739d5ea513417bb491a61aa276c4fb7ddd43. * gnu/packages/patches/ocaml-findlib-make-install.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-05gnu: Remove unused patch 'python2-rdflib-drop-sparqlwrapper.patch'....* gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-05gnu: Remove unused patch 'openldap-CVE-2017-9287.patch'....This is a followup to commit 47415332d70cd9166b0914ce43018ae57083c120. * gnu/packages/patches/openldap-CVE-2017-9287.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-05gnu: Remove unused patch 'glibc-memchr-overflow-i686.patch'....This is a followup to commit 67d527e35e367c9e9e89ec01cda2ce32cabd2d89. * gnu/packages/patches/glibc-memchr-overflow-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-05gnu: Remove unused patch 'net-tools-bitrot.patch'....This is a followup to commit b5f610620b65eabd671a5f68d6e6155194101efa. * gnu/packages/patches/net-tools-bitrot.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-04gnu: Remove unused patch 'xboing-CVE-2004-0149.patch'....This is a followup to commit 740a335558a440245a2374fae9ffaa3427aa546c. * gnu/packages/patches/xboing-CVE-2004-0149.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-04gnu: Remove unused patch 'ao-cad-aarch64-support.patch'....This is a followup to commit 28f4d56dd311a3b4c7102394120de05be6937494. * gnu/packages/patches/ao-cad-aarch64-support.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-04gnu: Remove unused patch 'blender-newer-ffmpeg.patch'....This is a followup to commit fc51c28ae8172c9f4370772bd76601f89b9498e6. * gnu/packages/patches/blender-newer-ffmpeg.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-04gnu: Removed unused patch 'readline-7.0-mingw.patch'....This patch was introduced in commit ae12d586275cdd96db23fb01bf840b2055b5b979, but it was never used. See <https://bugs.gnu.org/26581> for more information. * gnu/packages/patches/readline-7.0-mingw.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2019-02-04gnu: u-boot: Update to 2019.01....* gnu/packages/bootloaders.scm (u-boot): Update to 2019.01. (u-boot-tools): Disable CONFIG_SOUND in sandbox configs. (u-boot-pinebook)[source]: Remove patches. * gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch, gnu/packages/patches/u-boot-pinebook-dts.patch, gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch, gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch, gnu/packages/patches/u-boot-pinebook-syscon-node.patch, gnu/packages/patches/u-boot-pinebook-video-bridge.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust as necessary. Vagrant Cascadian
2019-02-04gnu: Add gnu-efi....* gnu/packages/efi.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Danny Milosavljevic
2019-02-02gnu: libreoffice: Fix FTBFS with Boost 1.69.0....* gnu/packages/patches/libreoffice-boost.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it. Marius Bakke
2019-01-31Merge branch 'master' into stagingMarius Bakke
2019-01-31gnu: p11-kit: Update to 0.23.15....* gnu/packages/patches/p11-kit-jks-timestamps.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/tls.scm (p11-kit): Update to 0.23.15. [source](patches): New field. Marius Bakke
2019-01-31gnu: Add python-cypari2 and python2-cypari2....* gnu/packages/sagemath.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register new module. Andreas Enge
2019-01-31gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778....* gnu/packages/patches/qemu-CVE-2018-16872.patch, gnu/packages/patches/qemu-CVE-2019-6778.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them. Leo Famulari
2019-01-29gnu: icecat: Add icecat-source....* gnu/packages/gnuzilla.scm (computed-origin-method): New variable. (%icecat-version, icecat-source): New variables. * gnu/packages/patches/icecat-makeicecat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Mark H Weaver
2019-01-29gnu: x265: Update to 3.0....* gnu/packages/video.scm (x265): Update to 3.0. [source]: Remove patch. * gnu/packages/patches/x265-detect512-all-arches.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2019-01-28gnu: Add missing file....* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/installer/newt/user.scm. Ricardo Wurmus
2019-01-28gnu: Move most packages from guile.scm to new module....* gnu/packages/guile.scm (artanis, guildhall, guile-aspell, guile-bash, guile-8sync, guile-daemon, guile-dsv, guile-fibers, guile-syntax-highlight, guile-sjson, guile-colorized, guile-pfds, guile-aa-tree, guile-simple-zmq, jupyter-guile-kernel, guile-sparql, guile-debbugs, guile-email, guile-debbugs-next, guile-newt, guile-mastodon, guile-parted, guile-xosd, guile-dbi, guile-dbd-sqlite3, guile-config, guile-hall, guile-ics, guile-wisp, guile-sly, g-wrap, guile-miniadapton, guile-reader, guile2.2-reader, guile-ncurses, guile-ncurses/gpm, guile-lib, guile2.0-lib, guile2.2-lib, guile-minikanren, guile2.0-minikanren, guile2.2-minikanren, guile-irregex, guile2.0-irregex, guile2.2-irregex, haunt, guile2.0-haunt, guile2.2-haunt, guile-redis, guile2.0-redis, guile2.2-redis, guile-commonmark, guile2.0-commonmark, guile2.2-commonmark, mcron, mcron2): Move these variables from here... * gnu/packages/guile-xyz.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/installer.scm, gnu/packages/bioinformatics.scm, gnu/packages/ci.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm, gnu/packages/mail.scm, gnu/packages/package-management.scm, gnu/packages/skribilo.scm, gnu/packages/web.scm, gnu/services/mcron.scm: Update module references. Ricardo Wurmus
2019-01-25gnu: linkchecker: Fix most test failures....Add a patch to skip more tests that require the network. Along with some other changes, this gets all but of one of the tests passing. The remaining test is broken due to a problem with the Python package in Guix, which is fixed by [1] which is currently on the core-updates branch. This patch doesn't work on core-updates due to python2-miniboa not being present. 1: d453b0e11d3f001a8160a7d126fdbf40e45d5042 * gnu/packages/python.scm (linkchecker)[source]: Add patch. [native-inputs]: Add more inputs required for the tests. [arguments]: Enable the tests, move the 'check phase after 'install. Test using the installed software, and use py.test. Christopher Baines
2019-01-25superlu-dist: Upgrade to 6.1.0....* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch. Eric Bavier
2019-01-25scotch: Upgrade to 6.0.6....* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6. [source]: Remove patches that have been fixed upstream. [arguments]: Add 'install-metis' phase. [outputs]: New field. (pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'. * gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch, gnu/packages/patches/scotch-test-threading.patch: Delete files. * gnu/packages/patches/scotch-integer-declarations.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust as necessary. Eric Bavier
2019-01-25gnu: Add Combinatorial BLAS....* gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them. Eric Bavier
2019-01-25Merge branch 'master' into stagingRicardo Wurmus
2019-01-23gnu: Add python-coveralls....* gnu/packages/python-check.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2019-01-23gnu: gnucash: Disable the stress-options-test using a phase....The qof test is also reinstated; it was failing because the needed locales were not installed. * gnu/packages/patches/gnucash-disable-failing-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/gnucash.scm (gnucash)[patches]: Remove it. [phases]{disable-stress-options-test}: Implement it using SUBSTITUTES*. {install-locales}: New phase. Maxim Cournoyer
2019-01-23gnu: gnucash: Convert price-quotes-perl patch to a phase....* gnu/packages/patches/gnucash-price-quotes-perl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/gnucash.scm (gnucash)[patches]: Remove it. [phases]{fix-finance-quote-check}: Implement it using SUBSTITUTES*. Maxim Cournoyer
2019-01-21gnu: qt: Update to 5.11.3....* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras, qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors, qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel qtwebglplugin, qtwebview, qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtscxml, qtgamepad, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech): Update to 5.11.3. (qt)[source]: Remove patch. * gnu/packages/patches/qt-5-renameat2.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2019-01-20Merge branch 'master' into stagingLudovic Courtès
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