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2018-03-14Merge branch 'master' into core-updatesRicardo Wurmus
2018-03-14gnu: Add ada.scm to GNU_SYSTEM_MODULES....This is a follow-up to commit ebd43a2a45f9ac0ce702ef5810eddafd0830db5f. * gnu/local.mk (GNU_SYSTEM_MODULES): Add ada.scm. Ricardo Wurmus
2018-03-12gnu: Add debian-archive-keyring....* gnu/packages/debian.scm (debian-archive-keyring): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Efraim Flashner
2018-03-12gnu: lrzip: Fix CVE-2017-8842....* gnu/packages/compression.scm (lrzip)[source]: Add patch. * gnu/packages/patches/lrzip-CVE-2017-8842.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2018-03-11gnu: java-jeromq: Fix tests....* gnu/packages/patches/java-jeromq-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/java.scm (java-jeromq)[source](patches): Add it. [arguments](#test-exclude): Disable more failing tests. Gábor Boskovits
2018-03-10gnu: zsh: Fix CVE-2018-{7548,7549}....* gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/shells.scm (zsh)[source]: Use them. Leo Famulari
2018-03-08gnu: libxcb: Update to 1.13....* gnu/packages/xorg.scm (libxcb): Update to 1.13. [source](patches): Remove. * gnu/packages/patches/libxcb-python-3.5-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2018-03-08gnu: xcb-proto: Update to 1.13....* gnu/packages/xorg.scm (xcb-proto): Update to 1.13. [source](patches): Remove. * gnu/packages/patches/xcb-proto-python3-print.patch, gnu/packages/patches/xcb-proto-python3-whitespace.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2018-03-08gnu: graphite2: Update to 1.3.11....* gnu/packages/patches/graphite2-ffloat-store.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/fontutils.scm (graphite2): Update to 1.3.11. [source](patches): Remove. Marius Bakke
2018-03-06gnu: Add maven-resolver-api....* gnu/packages/maven.scm: New file. (maven-resolver-api): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Julien Lepiller
2018-03-04gnu: ceph: Update to 12.2.4....* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to upstream changes. * gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file. * gnu/packages/patches/ceph-rocksdb-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 12.2.4. [source](patches): Adjust. [arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable. [native-inputs]: Add GPERF. [inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE. Marius Bakke
2018-03-04gnu: antlr3-3.3: Fix java8 issue....* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch. * gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Gábor Boskovits
2018-03-04gnu: antlr3-3.1: Fix java8 issue....* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch. * gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Gábor Boskovits
2018-03-02gnu: Add r-hpar....* gnu/packages/bioconductor.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2018-03-02gnu: icecat: Update to 52.6.0-gnu1....* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1. [source]: Remove patches that are no longer needed. * gnu/packages/patches/icecat-bug-1348660-pt5.patch, gnu/packages/patches/icecat-bug-1414945.patch, gnu/packages/patches/icecat-bug-1415133.patch, gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Mark H Weaver
2018-03-01gnu: php: Fix test failure....* gnu/packages/php.scm (php)[inputs]: Use gd-for-php. (gd-for-php): New private variable. * gnu/packages/patches/gd-CVE-2018-5711.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Julien Lepiller
2018-03-01gnu: Graft glibc to allow execution on Linux 2.6.32....* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc/linux)[replacement]: New field. (glibc-2.26-patched): New variable. Ricardo Wurmus
2018-02-28gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461]....* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1. [source]: Remove upstreamed patch. * gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-02-28gnu: wavpack: Fix CVE-2018-6767....* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/audio.scm (wavpack)[source](patches): Add it. Marius Bakke
2018-02-28gnu: pcre2: Update to 10.31....* gnu/packages/pcre.scm (pcre2): Update to 10.31. [source]: Remove upstreamed patches. * gnu/packages/patches/pcre2-CVE-2017-7186.patch: Delete this file... * gnu/packages/patches/pcre2-CVE-2017-8786.patch: ...and this one. * gnu/local.mk (dist_patch_DATA): Remove them. Tobias Geerinckx-Rice
2018-02-28gnu: python-mox3: Update to 0.24.0....* gnu/packages/openstack.scm (python-mox3): Update to 0.24.0. [source](patches): New field. [arguments]: Remove. [native-inputs]: Add PYTHON-OPENSTACKDOCSTHEME and PYTHON-SUBUNIT. Replace PYTHON-SPHINX with PYTHON-SPHINX-1.6. Move PYTHON-PBR and PYTHON-FIXTURES ... [propagated-inputs]: ... here. New field. [description]: Don't mention explicit Python versions. * gnu/packages/patches/python-mox3-python3.6-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Marius Bakke
2018-02-28gnu: dblatex: Update to 0.3.10....* gnu/packages/docbook.scm (dblatex): Update to 0.3.10. [source]: Remove patch. * gnu/packages/patches/dblatex-remove-multirow.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-02-28services: cgit: Add more configuration fields....* gnu/services/version-control.scm (cgit-service-type): Move to separate file. * gnu/services/cgit.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add this. * gnu/tests/version-control.scm: Add this. * doc/guix.texi (Cgit Service): Document this. Oleg Pykhalov
2018-02-27gnu: perl-gd: Update to 2.68....* gnu/packages/gd.scm (perl-gd): Update to 2.68. [source]: Remove obsolete patch. [native-inputs]: Remove perl-module-build. [inputs]: Use canonical package names and order alphabetically. [arguments]: Replace #:module-build-flags with fewer #:make-maker-flags, enable #:tests?, and remove ‘clear-autogenerated-files’ phase. * gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-02-26gnu: python-parse: Update to 1.8.2....* gnu/packages/patches/python-parse-too-many-fields.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/python.scm (python-parse): Update to 1.8.2. [source](patches): Remove. [arguments]: Use INVOKE instead of SYSTEM*. Marius Bakke
2018-02-26gnu: Add agda....* gnu/packages/agda.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add adga.scm. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Alex ter Weele
2018-02-24gnu: wxmaxima: Update to 18.02.0....* gnu/packages/maths.scm (wxmaxima): Update to 18.02.0. [source]: Add patch. [build-system]: Use the cmake-build-system. [native-inputs]: Remove autoconf and automake. [arguments]: Disable tests, remove 'autoconf' phase. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Kei Kebreau
2018-02-24Merge branch 'master' into core-updatesMarius Bakke
2018-02-24gnu: Add perl-regexp-pattern-license....* gnu/packages/license.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add this. Oleg Pykhalov
2018-02-24gnu: password-store: Fix compatibility with GnuPG 2.2.5....* gnu/packages/patches/password-store-gnupg-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/password-utils.scm (password-store)[source]: Use it. Clément Lassieur
2018-02-23gnu: wavpack: Fix CVE-2018-7253 and CVE-2018-7254....* gnu/packages/patches/wavpack-CVE-2018-7253.patch, gnu/packages/patches/wavpack-CVE-2018-7254.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/audio.scm (wavpack)[source](patches): Use them. Marius Bakke
2018-02-23gnu: optipng: Update to 0.7.7 [security fixes]....This release claims to fix 2 vulnerabilities: - ‘an integer overflow vulnerability in the TIFF decoder’ (CVE-2017-1000229, previously patched in Guix), and - ‘a buffer overflow vulnerability in the GIF decoder’. * gnu/packages/image.scm (optipng): Update to 0.7.7. [source]: Remove patch. [arguments]: Substitute INVOKE for SYSTEM* and end phase with #t. * gnu/packages/patches/optipng-CVE-2017-1000229.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-02-22gnu/local.mk: Add emulators.scm....* gnu/local.mk (GNU_SYSTEM_MODULES): Add emulators.scm. Rutger Helling
2018-02-21gnu: htop: Fix tree view....* gnu/packages/patches/htop-fix-process-tree.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (htop)[source]: Use it. Tobias Geerinckx-Rice
2018-02-20gnu: ldc: Update to 1.7.0....Fixes recent bootstrap and updates ldc and package manager to match. * gnu/packages/ldc.scm (ldc-bootstrap): Update to 0.17.4. [properties]: Add max-slient-time. [arguments]<#:phases>[patch-phobos]: Update patches (see below). (ldc): Update to 1.7.0. (ldc-beta): Delete variable. [arguments]<#:phases>[patch-phobos]: Update patches (see below). [arguments]<#:phases>[check]: Use invoke. (rdmd): Update to 2.077.1. (dub): Update to 1.7.2. * gnu/local.mk (dist_patch_DATA): Remove "ldc-disable-tests.patch". Add "ldc-bootstrap-disable-tests.patch". Remove "ldc-1.1.0-disable-phobos-tests.patch". Add "ldc-1.7.0-disable-phobos-tests.patch". Remove "ldc-1.1.0-disable-dmd-tests.patch". Co-Authored-By: Danny Milosavljevic <dannym@scratchpost.org> Pjotr Prins
2018-02-20gnu: qemu: Update to 2.11.1....* gnu/packages/patches/qemu-CVE-2017-15038.patch, gnu/packages/patches/qemu-CVE-2017-15289.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/virtualization.scm (qemu): Update to 2.11.1 [source](patches): Remove. Marius Bakke
2018-02-20gnu: freetype: Fix CVE-2018-6942....* gnu/packages/patches/freetype-CVE-2018-6942.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/fontutils.scm (freetype)[replacement]: New field. (freetype/fixed): New variable. Marius Bakke
2018-02-19gnu: libtasn1: Update to 4.13....* gnu/packages/tls.scm (libtasn1): Update to 4.13. [source]: Remove patches. * gnu/packages/patches/libtasn1-CVE-2017-10790.patch, gnu/packages/patches/libtasn1-CVE-2018-6003.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Leo Famulari
2018-02-19gnu: tar: Update to 1.30....* gnu/packages/base.scm (tar): Update to 1.30. [source]: Remove 'tar-CVE-2016-6321.patch'. * gnu/packages/patches/tar-CVE-2016-6321.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Leo Famulari <leo@famulari.name> Alex Vong
2018-02-20gnu: lcms: Update to 2.9....* gnu/packages/ghostscript.scm (lcms): Update to 2.9. [source]: Remove patch. * gnu/packages/patches/lcms-CVE-2016-10165.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-02-19gnu: Add gzdoom....* gnu/packages/games.scm (gzdoom): New variable. * gnu/packages/patches/gzdoom-search-in-installed-share.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> okapi
2018-02-18gnu: kde-frameworks: Update to 5.42.0 resp. 5.42.1...Beside simple updating: - Change all todo-comments for test-cases into "fixme" comments to make them easier to find. - breeze-icons: Blacklist a test failing at build.kde.org, too. - extra-cmake-modules: Patch out a vanised test-case. - kfilemetadata: Can now run the test-suite uninstalled. Blacklist a failing test-case. - kimageformats: No longer symlink plugins into ./bin for testing. - ktexteditor: Remove now unused patch. - plasma-framework: Add input kirigami - sonnet: For testing set QT_QPA_PLATFORM=offscreen. * gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, kactivities, kactivities-stats, kapidox, karchive, kauth, kbookmarks, kcmutils, kcodecs, kcompletion, kconfig, kconfigwidgets, kcoreaddons, kcrash, kdbusaddons, kde-frameworkintegration, kdeclarative, kded, kdelibs4support, kdesignerplugin, kdesu, kdewebkit, kdnssd, kdoctools, kemoticons, kglobalaccel, kguiaddons, khtml, ki18n, kiconthemes, kidletime, kinit, kio, kirigami, kitemmodels, kitemviews, kjobwidgets, kjs, kjsembed, kmediaplayer, knewstuff, knotifications, knotifyconfig, kpackage, kparts, kpeople, kplotting, kpty, kross, krunner, kservice, ksyntaxhighlighting, ktextwidgets, kunitconversion, kwallet, kwayland, kwindowsystem, kxmlgui, kxmlrpcclient, modemmanager-qt, networkmanager-qt, oxygen-icons, prison, solid, threadweaver): Update to 5.42.0. (kwidgetsaddons): Update to 5.42.1. (breeze-icons): Update to 5.42.0. [#:phases]<disable-failing-test> New phase. (extra-cmake-modules): Update to 5.42.0. [#:phases]<post-5.42.0-release-fix>: New phase. (kfilemetadata): Update to 5.42.0. [#:phases]: No longer move check behind install. [#:phases]<check-setup> Remove. [#:phase]<disable-failing-test> New phase. (kimageformats): Update to 5.42.0. [#:phases]<check-setup>: No longer symlink plugins into ./bin. (ktesteditor)[source]: Remove patch. (plasma-framework)[inputs]: Add kirigami (sonnet): Update to 5.42.0. [#:phases]<check-setup> New phase. * gnu/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Hartmut Goebel
2018-02-18gnu: qtbase: Use the store paths for other packages and dynamically loaded libs....Transfer the applicable NixOS patches as of 2018-01-19: - Not adopted: We don't change the .cmake.in and .prf, but use config mechanisms provided by th Qt build system. - src/corelib/tools/qtimezoneprivate_tz.cpp: Adopted patch: Use $TZDIR to search for time-zone data. Thus avoid depending on package "tzdata", which often introduces changes with near-immediate effects, so it's important to be able to update it fast. - src/corelib/kernel/qcoreapplication.cpp: Not adopted: NixOS adds plugin paths derived from PATH. We do not need this, since we already have native-search-path QT_PLUGIN_PATH. - src/network/kernel/qdnslookup_unix.cpp, src/network/kernel/qhostinfo_unix.cpp: Transferred: Use hard-coded path to libresolv. - src/network/ssl/qsslcontext_openssl.cpp: Not adopted: NixOS changes a conditional compilation for Qt 5.9 (but leaves it unchanged for Qt 5.10) to fix compilation with libressl. But Qt does not support libressl anway, see config.tests/openssl/openssl.cpp in qtbase 5.9.4. - src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp: Transferred: Use hard-coded path to libx11. - src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp: Transferred: Use hard-coded path to mess's libGL, no need for a fall-back. - src/plugins/platforms/xcb/qxcbcursor.cpp: Transferred: Use hard-coded path to Xcursor. - src/plugins/platformthemes/gtk3/main.cpp: Not adopted: NixOS changes $XDG_DATA_DIRS and $GIO_EXTRA_MODULES in the code. We already have a search-path-specification for this. - src/testlib/qtestassert.h: Decided not to adopt this for guix. * gnu/packages/patches/qtbase-use-TZDIR.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qtbase): Add comment. [source]: Use new patch. [arguments]<#:phases>'patch-paths': New phase. Hartmut Goebel
2018-02-18gnu: mailutils: Fix uninitialized memory bug....This was causing segfaults in the MH test suite when building with glibc 2.26 on x86_64. * gnu/packages/patches/mailutils-uninitialized-memory.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mail.scm (mailutils)[source](patches, snippet): New fields. [native-inputs]: New field. Ludovic Courtès
2018-02-18gnu: gcc@4.9: Fix libsanitizer compilation with glibc 2.26....* gnu/packages/patches/gcc-4.9-libsanitizer-fix.patch: New file. * gnu/packages/gcc.scm (gcc-4.9)[source](patches): Add it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2018-02-18Merge branch 'master' into core-updatesRicardo Wurmus
2018-02-17gnu: python-waitress: Update to 1.1.0....* gnu/packages/patches/python-waitress-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/python.scm (python-waitress): Update to 1.1.0. [source](patches): New field. Marius Bakke
2018-02-18gnu: ruby-2.4.3: Update rubygems to 2.7.6....This fixes the security issues described at https://www.ruby-lang.org/en/news/2018/02/17/multiple-vulnerabilities-in- rubygems/ * gnu/packages/patches/ruby-rubygems-276-for-ruby24.patch: New file. * gnu/packages/ruby.scm (ruby-2.4.3)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2018-02-16Merge branch 'master' into core-updatesMark H Weaver
2018-02-16gnu: ghc: Make memory allocator decommit memory on Linux < 4.5....* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/haskell.scm (ghc-8): Use it. Danny Milosavljevic
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