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path: root/gnu/packages/bioconductor.scm
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2023-07-12gnu: r-tcgabiolinks: Update to 2.28.3....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.3. Ricardo Wurmus
2023-07-12gnu: r-bionero: Update to 1.8.5....* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.5. [propagated-inputs]: Remove r-ggnewscale and r-networkd3; add r-ggdendro and r-rlang. Ricardo Wurmus
2023-07-12gnu: r-biocthis: Update to 1.10.3....* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.3. Ricardo Wurmus
2023-07-12gnu: r-basilisk: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.1. Ricardo Wurmus
2023-07-12gnu: r-delayedmatrixstats: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.1. Ricardo Wurmus
2023-07-12gnu: r-sparsematrixstats: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.2. Ricardo Wurmus
2023-07-12gnu: r-fishpond: Update to 2.6.2....* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.2. Ricardo Wurmus
2023-07-12gnu: r-bioccheck: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.1. Ricardo Wurmus
2023-07-12gnu: r-universalmotif: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.1. Ricardo Wurmus
2023-07-12gnu: r-variancepartition: Update to 1.30.2....* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.2. Ricardo Wurmus
2023-07-12gnu: r-variantfiltering: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.1. Ricardo Wurmus
2023-07-12gnu: r-quasr: Update to 1.40.1....* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.1. Ricardo Wurmus
2023-07-12gnu: r-motifbreakr: Update to 2.14.2....* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.14.2. Ricardo Wurmus
2023-07-12gnu: r-lpsymphony: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.1. [native-inputs]: Add gfortran. Ricardo Wurmus
2023-07-12gnu: r-glmgampoi: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.2. Ricardo Wurmus
2023-07-12gnu: r-interactionset: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.1. Ricardo Wurmus
2023-07-12gnu: r-matrixgenerics: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2. Ricardo Wurmus
2023-07-12gnu: r-systempiper: Update to 2.6.3....* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3. Ricardo Wurmus
2023-07-12gnu: r-summarizedexperiment: Update to 1.30.2....* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2. Ricardo Wurmus
2023-07-12gnu: r-maaslin2: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1. [propagated-inputs]: Remove r-lpsymphony; add r-tibble. Ricardo Wurmus
2023-07-12gnu: r-limma: Update to 3.56.2....* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2. Ricardo Wurmus
2023-07-12gnu: r-lfa: Update to 2.0.11....* gnu/packages/bioconductor.scm (r-lfa): Update to 2.0.11. [propagated-inputs]: Add r-rspectra. Ricardo Wurmus
2023-07-12gnu: r-genomicfeatures: Update to 1.52.1....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.1. Ricardo Wurmus
2023-07-12gnu: r-deseq2: Update to 1.40.2....* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.2. Ricardo Wurmus
2023-07-12gnu: r-biomart: Update to 2.56.1....* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.1. Ricardo Wurmus
2023-07-12gnu: r-annotationforge: Update to 1.42.2....* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.2. Ricardo Wurmus
2023-07-12gnu: r-genomeinfodb: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.1. Ricardo Wurmus
2023-07-12gnu: r-annotationdbi: Update to 1.62.2....* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.2. Ricardo Wurmus
2023-07-12gnu: r-affy: Update to 1.78.1....* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.1. Ricardo Wurmus
2023-07-12gnu: r-isoformswitchanalyzer: Update to 2.0.1....* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1. [propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer, r-s4vectors, r-saturn, r-summarizedexperiment, r-sva, and r-tidyr. Ricardo Wurmus
2023-07-12gnu: r-iranges: Update to 2.34.1....* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.1. Ricardo Wurmus
2023-07-12gnu: r-delayedarray: Update to 0.26.6....* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.6. Ricardo Wurmus
2023-07-12gnu: r-bambu: Update to 3.2.5....* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.5. Ricardo Wurmus
2023-07-12gnu: r-alevinqc: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.1. Ricardo Wurmus
2023-07-12gnu: r-ancombc: Update to 2.2.1....* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.1. [propagated-inputs]: Remove r-dplyr, r-emmeans, r-magrittr, r-rlang, r-rngtools, r-tibble, and r-tidyr; add r-gtools, r-matrix, and r-multcomp. Ricardo Wurmus
2023-07-12gnu: r-gdsfmt: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.1. [properties]: Tell updater to leave the extra inputs be. Ricardo Wurmus
2023-07-12gnu: Add r-saturn....* gnu/packages/bioconductor.scm (r-saturn): New variable. Ricardo Wurmus
2023-07-12gnu: Add r-pfamanalyzer....* gnu/packages/bioconductor.scm (r-pfamanalyzer): New variable. Ricardo Wurmus
2023-07-12gnu: r-mzr: Update to 2.34.1....* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.1. [properties]: Tell updater to not remove the "boost" input. Ricardo Wurmus
2023-07-12gnu: r-ggpicrust2: Update to 1.7.1....* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.1. [propagated-inputs]: Remove r-phyloseq; add r-ggh4x. Ricardo Wurmus
2023-07-12gnu: r-scistreer: Update to 1.2.0....* gnu/packages/bioconductor.scm (r-scistreer): Update to 1.2.0. Ricardo Wurmus
2023-07-12gnu: r-numbat: Update to 1.3.2-1....* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.2-1. Ricardo Wurmus
2023-07-12gnu: r-biomartr: Update to 1.0.4....* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.4. Ricardo Wurmus
2023-07-03gnu: Add r-cellid....* gnu/packages/bioconductor.scm (r-cellid): New variable. Navid Afkhami
2023-06-03gnu: r-ggpicrust2: Update to 1.7.0....* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.0. [propagated-inputs]: Add r-circlize. [native-inputs]: Add r-knitr. Ricardo Wurmus
2023-06-02gnu: r-tcgabiolinks: Update to 2.28.2....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.2. Ricardo Wurmus
2023-06-02gnu: r-biocthis: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.1. Ricardo Wurmus
2023-06-02gnu: r-basilisk-utils: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.1. Ricardo Wurmus
2023-06-02gnu: r-megadepth: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.10.0. Ricardo Wurmus
2023-06-02gnu: r-s4arrays: Update to 1.0.4....* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.4. Ricardo Wurmus