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path: root/gnu/packages/bioconductor.scm
AgeCommit message (Expand)Author
2022-01-07gnu: r-sanssouci: Add source file-name.•••* gnu/packages/bioinformatics.scm (r-sanssourci)[source]: Add file-name field. Efraim Flashner
2022-01-06gnu: r-tximeta: Update to 1.12.4.•••* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.4. Ricardo Wurmus
2022-01-06gnu: r-tcgabiolinks: Update to 2.22.2.•••* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.2. Ricardo Wurmus
2022-01-06gnu: r-biodb: Update to 1.2.2.•••* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.2. Ricardo Wurmus
2022-01-06gnu: r-sushi: Update to 1.32.0.•••* gnu/packages/bioconductor.scm (r-sushi): Update to 1.32.0. Ricardo Wurmus
2022-01-06gnu: r-bioassayr: Update to 1.32.1.•••* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.1. Ricardo Wurmus
2022-01-06gnu: r-universalmotif: Update to 1.12.2.•••* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.2. Ricardo Wurmus
2022-01-06gnu: r-cytolib: Update to 2.6.1.•••* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.1. Ricardo Wurmus
2022-01-06gnu: r-clusterprofiler: Update to 4.2.1.•••* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.1. Ricardo Wurmus
2022-01-06gnu: r-icobra: Update to 1.22.2.•••* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.2. Ricardo Wurmus
2022-01-06gnu: r-destiny: Update to 3.8.0.•••* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.0. Ricardo Wurmus
2022-01-06gnu: r-diffbind: Update to 3.4.3.•••* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.3. Ricardo Wurmus
2022-01-06gnu: r-systempiper: Update to 2.0.5.•••* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.5. Ricardo Wurmus
2022-01-06gnu: r-structuralvariantannotation: Update to 1.10.1.•••* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.1. Ricardo Wurmus
2022-01-06gnu: r-genomicfeatures: Update to 1.46.3.•••* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.3. Ricardo Wurmus
2022-01-06gnu: r-chipseeker: Update to 1.30.3.•••* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.3. Ricardo Wurmus
2022-01-06gnu: r-biocparallel: Update to 1.28.3.•••* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.3. Ricardo Wurmus
2022-01-06gnu: r-yapsa: Update to 1.20.1.•••* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.20.1. [propagated-inputs]: Remove r-pmcmr; add r-pmcmrplus. Ricardo Wurmus
2022-01-05gnu: r-activedriverwgs: Update to 1.0.3.•••* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3. Ricardo Wurmus
2022-01-05gnu: r-activedriverwgs: Update to 1.1.2.•••* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2. [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10. Ricardo Wurmus
2022-01-05gnu: r-valr: Update to 0.6.4.•••* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer. Ricardo Wurmus
2021-12-16gnu: Add r-singler.•••* gnu/packages/bioconductor.scm (r-singler): New variable. Ricardo Wurmus
2021-12-16gnu: Add r-celldex.•••* gnu/packages/bioconductor.scm (r-celldex): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-maftools.•••* gnu/packages/bioconductor.scm (r-maftools): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-tcgabiolinks.•••* gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-tcgabiolinksgui-data.•••* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable. Ricardo Wurmus
2021-12-13Merge branch 'core-updates-frozen' into 'master'.•••At last! Maxim Cournoyer
2021-12-13gnu: Further simplify package inputs.•••This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.) Ludovic Courtès
2021-12-13gnu: Simplify package inputs.•••This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-13gnu: Add r-chromvarmotifs.•••* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-12-13gnu: Add r-sanssouci.•••* gnu/packages/bioconductor.scm (r-sanssouci): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-isoformswitchanalyzer.•••* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-drimseq.•••* gnu/packages/bioconductor.scm (r-drimseq): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-dearseq.•••* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Marcel Schilling
2021-12-03gnu: r-flowclust: Add gsl.•••* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally committed comment character. Ricardo Wurmus
2021-12-02gnu: Add r-scdblfinder.•••* gnu/packages/bioconductor.scm (r-scdblfinder): New variable. Ricardo Wurmus
2021-12-01gnu: Add r-phyloseq.•••* gnu/packages/cran.scm (r-phyloseq): New variable Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Nicolas Vallet
2021-11-30gnu: Add r-fmcsr.•••* gnu/packages/bioconductor.scm (r-fmcsr): New variable. Ricardo Wurmus
2021-11-27gnu: Add r-xmapbridge.•••* gnu/packages/bioconductor.scm (r-xmapbridge): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-27gnu: Add r-xina.•••* gnu/packages/bioconductor.scm (r-xina): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-27gnu: Add r-stringdb.•••* gnu/packages/bioconductor.scm (r-stringdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-26gnu: Add r-derfinderhelper.•••* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun
2021-11-24gnu: r-s4vectors: Update to 0.32.3.•••* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3. Ricardo Wurmus
2021-11-24gnu: r-mixomics: Update to 6.18.1.•••* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1. Ricardo Wurmus
2021-11-24gnu: r-xcms: Update to 3.16.1.•••* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1. Ricardo Wurmus
2021-11-24gnu: r-dose: Update to 3.20.1.•••* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1. Ricardo Wurmus
2021-11-24gnu: r-genomicranges: Update to 1.46.1.•••* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1. Ricardo Wurmus
2021-11-24gnu: r-biocparallel: Update to 1.28.1.•••* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.1. Ricardo Wurmus
2021-11-24gnu: r-biomart: Update to 2.50.1.•••* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.1. Ricardo Wurmus
2021-11-24gnu: Add r-bsgenome-drerio-ucsc-danrer11.•••* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New variable. Ricardo Wurmus
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