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path: root/gnu/packages/bioconductor.scm
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2023-12-15gnu: r-trackviewer: Update to 1.38.1.•••* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.1. Change-Id: I3ec74e7c37830e7a0b3b12311e304cc2e4fe322e Ricardo Wurmus
2023-12-15gnu: r-tcgautils: Update to 1.22.2.•••* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.2. Change-Id: I9c33a55076c672fa3a6ff6c97675dee16d186a39 Ricardo Wurmus
2023-12-15gnu: r-rhdf5filters: Update to 1.14.1.•••* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.1. Change-Id: I260973b51c3a8e895339d1c4b6fbed8f66ccb50c Ricardo Wurmus
2023-12-15gnu: r-rhdf5: Update to 2.46.1.•••* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.1. Change-Id: Ia4781476ab82dd867a707e98767d8ee12d208003 Ricardo Wurmus
2023-12-15gnu: r-msnbase: Update to 2.28.1.•••* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.1. Change-Id: I25fdd2662ab60939732cdee51fc2b53916f1d705 Ricardo Wurmus
2023-12-15gnu: r-genomeinfodb: Update to 1.38.2.•••* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.2. Change-Id: I17852db375cc7e833d100998c89751e68f3d4362 Ricardo Wurmus
2023-12-15gnu: r-edger: Update to 4.0.3.•••* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.3. Change-Id: I97d73da131092effbf2404e710389d863ba39889 Ricardo Wurmus
2023-12-15gnu: r-champ: Update to 2.32.0.•••* gnu/packages/bioconductor.scm (r-champ): Update to 2.32.0. Change-Id: I2058a0c0b086452ccfae5ef84884aa0b9cf51abb Ricardo Wurmus
2023-12-15gnu: r-annotationdbi: Update to 1.64.1.•••* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.1. Change-Id: If7f6bef70b3f4cc59c81ea68632b36c4b8449a73 Ricardo Wurmus
2023-12-15gnu: r-infercnv: Update to 1.18.1.•••* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.1. Change-Id: I99b0f17246ef267a58f87c1719066b1b4f198d8b Ricardo Wurmus
2023-12-15gnu: r-dmrcate: Update to 2.16.1.•••* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.16.1. [propagated-inputs]: Remove r-dss. Change-Id: I183971826201b19cc88eb2768716aa2e165aba1f Ricardo Wurmus
2023-12-15gnu: r-degreport: Update to 1.38.5.•••* gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.5. [propagated-inputs]: Add r-dendextend and r-stringi. Change-Id: I73fe47489449b46406b879dba0318d02dc3c7614 Ricardo Wurmus
2023-12-15gnu: r-cellid: Update to 1.10.1.•••* gnu/packages/bioconductor.scm (r-cellid): Update to 1.10.1. Change-Id: I74f0e39907eb293f84a2ee9d29ef5feab15b698a Ricardo Wurmus
2023-12-15gnu: r-biocversion: Update to 3.18.1.•••* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.1. Change-Id: I844d321dc3716d2658ddd75a81d844f8b302af53 Ricardo Wurmus
2023-12-15gnu: r-bandits: Update to 1.18.1.•••* gnu/packages/bioconductor.scm (r-bandits): Update to 1.18.1. Change-Id: Ied13d156cb7762fd6f86a5a0cccff302b684530d Ricardo Wurmus
2023-12-15gnu: r-aseb: Update to 1.46.3.•••* gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.3. Change-Id: I7fb905224840f598261fceba67207cd71e7a73d9 Ricardo Wurmus
2023-12-15gnu: r-anvil: Update to 1.14.1.•••* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.1. Change-Id: I2ea83e4a11a1268f222201480563fe1c9ce1060b Ricardo Wurmus
2023-12-15gnu: r-agimicrorna: Update to 2.52.0.•••* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.52.0. Change-Id: I0f739590d115b5dc354833cdac2ba3c400ddd995 Ricardo Wurmus
2023-12-15gnu: r-rhdf5lib: Update to 1.24.1.•••* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.1. [propagated-inputs]: Add r-biocstyle and r-stringr. [native-inputs]: Add r-rmarkdown. Change-Id: I18c06543abee8e4a715f1ef120ce600562804225 Ricardo Wurmus
2023-12-15gnu: r-reportingtools: Update to 2.42.3.•••* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.42.3. [source]: Adjust snippet. [arguments]: Use minify-build-system in 'process-javascript phase. [native-inputs]: Remove r-knitr; add r-rmarkdown. Change-Id: I1c00e1a1d8095f40da29b57b8e82de493fcff26e Ricardo Wurmus
2023-12-15gnu: r-affycoretools: Update to 1.74.0.•••* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.74.0. Change-Id: I4197d73e62477bb64182181229c8a33f3048406a Ricardo Wurmus
2023-12-15gnu: r-abn: Update to 3.0.4.•••* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.4. Change-Id: I15970d14205b32f254ecf2c5207e98d7289ac281 Ricardo Wurmus
2023-12-15gnu: r-fhtest: Update to 1.5.1.•••* gnu/packages/bioconductor.scm (r-fhtest): Update to 1.5.1. Change-Id: I08513b08ee2fc72ab00b372a013dbfa6ed064fc1 Ricardo Wurmus
2023-12-15gnu: r-biomartr: Update to 1.0.7.•••* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.7. Change-Id: I7f02a92d86506b4fbca950a13ed106753e1b7f76 Ricardo Wurmus
2023-12-15gnu: r-interactivedisplay: Add missing input.•••* gnu/packages/bioconductor.scm (r-interactivedisplay)[propagated-inputs]: Add r-biocmanager. Change-Id: I7e29c28202496ba58ec35adf03b77ac84691e492 Ricardo Wurmus
2023-12-15gnu: r-interactivedisplay: Add missing JavaScript sources.•••* gnu/packages/bioconductor.scm (r-interactivedisplay)[source]: Update list of minified JavaScript files to delete. [arguments]: Use minify-build-system to process JavaScript files. [native-inputs]: Add js-d3-v2; relabel js-datatables as js-datatables-1.10; add js-datatables-1.9. Change-Id: If8b6d9378680e9f69d71be56ce28add70b1a4564 Ricardo Wurmus
2023-12-15gnu: r-wgcna: Update to 1.72-5.•••* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.72-5. Change-Id: Ib9d3b0e6ba191839e4b22cb0b8f63e6b0e9d2baa Ricardo Wurmus
2023-12-11gnu: Add r-polyester.•••* gnu/packages/bioconductor.scm (r-polyester): New variable. Change-Id: I415089cda3214ec04402fc6f4505fa868414d0e2 Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2023-11-15gnu: r-abn: Update to 3.0.3.•••* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.3. Change-Id: Id94ec47d805af9da63dbf43a9edbd5e7c3a5a62a Ricardo Wurmus
2023-11-15gnu: r-activepathways: Update to 2.0.3.•••* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.3. Change-Id: I4199c307d48583c0894a39af78f6a4027cb0cf54 Ricardo Wurmus
2023-11-15gnu: r-ggpicrust2: Update to 1.7.3.•••* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.3. Change-Id: I18ab123d640ceec9315a21dff48ed2f1ea4ddff5 Ricardo Wurmus
2023-11-13gnu: Add r-bcrank.•••* gnu/packages/bioconductor.scm (r-bcrank): New variable. Change-Id: Id43ae3b7f6eff54e1180b489c90fc72176751f9f Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-bbcanalyzer.•••* gnu/packages/bioconductor.scm (r-bbcanalyzer): New variable. Change-Id: Icd3c77c9522d73638ddb0934ad332ddb7b947a8e Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-baynorm.•••* gnu/packages/bioconductor.scm (r-baynorm): New variable. Change-Id: I83e82d3d0362874918f423ab01f038c74f3eb265 Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-bayesspace.•••* gnu/packages/bioconductor.scm (r-bayesspace): New variable. Change-Id: Id9c0d23e209bafea5941a1e1f968fab5f1724eab Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-bayesknockdown.•••* gnu/packages/bioconductor.scm (r-bayesknockdown): New variable. Change-Id: Icceffc04071efaa8a8b79144005fa7745abc7e1a Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-basicstarrseq.•••* gnu/packages/bioconductor.scm (r-basicstarrseq): New variable. Change-Id: I88f314877ea4ab98976820a4acc337ae3a34e604 Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-basics.•••* gnu/packages/bioconductor.scm (r-basics): New variable. Change-Id: I6f0afeeb41f667d780707af65034d5ba978f0d4a Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-basic4cseq.•••* gnu/packages/bioconductor.scm (r-basic4cseq): New variable. Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3 Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-bsgenome-ecoli-ncbi-20080805.•••* gnu/packages/bioconductor.scm (r-bsgenome-ecoli-ncbi-20080805): New variable. Change-Id: Ic42527fa334be4c23ebe2e19461571d899db77ca Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-bags.•••* gnu/packages/bioconductor.scm (r-bags): New variable. Change-Id: If0c533898a5e05809f23e7e8b52fc3d5fbffc8fb Mădălin Ionel Patrașcu
2023-11-13gnu: Add r-breastcancervdx.•••* gnu/packages/bioconductor.scm (r-breastcancervdx): New variable. Change-Id: Ia3437ab67a00ce23c61553ff15f940b8a3ee9c8a Mădălin Ionel Patrașcu
2023-11-04gnu: Add r-screpertoire.•••* gnu/packages/bioconductor.scm (r-screpertoire): New variable. Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15 Mădălin Ionel Patrașcu
2023-11-04gnu: Add r-powertcr.•••* gnu/packages/bioconductor.scm (r-powertcr): New variable. Change-Id: I75fc30a7021d6199b768318da3afcfeaaafcf027 Mădălin Ionel Patrașcu
2023-11-04gnu: Add r-rnbeads.•••* gnu/packages/bioconductor.scm (r-rnbeads): New variable. Change-Id: I78b248a449473fc37ac414295faa6e61269b8625 Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2023-11-04gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked.•••* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38-masked): New variable. Change-Id: Ic1b646a3bd3b7262dd82f0972961c2e89628e90b Mădălin Ionel Patrașcu
2023-11-04gnu: Add r-methylaid.•••* gnu/packages/bioconductor.scm (r-methylaid): New variable. Change-Id: I7839035e5316bdbe5f1386b7b41ed2fc440fb432 Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2023-11-03gnu: Remove r-sigpathway.•••This package has been removed with the release of Bioconductor 3.18. * gnu/packages/bioconductor.scm (r-sigpathway): Remove variable. Change-Id: I5cb9d938f370aa28b196f9cea95fb6024c2e6e37 Ricardo Wurmus
2023-11-03gnu: r-rhdf5filters: Simplify.•••* gnu/packages/bioconductor.scm (r-rhdf5filters)[arguments]: Remove 'use-system-libraries phase and pass configure flags to disable bundled libraries. Change-Id: I2fb115e7b3df00cccb3f8d6659d465075d21f19b Ricardo Wurmus
2023-11-03gnu: Remove r-genomegraphs.•••This package had been removed from Bioconductor with release 3.11. * gnu/packages/bioconductor.scm (r-genomegraphs): Remove variable. Change-Id: I73cc8cc8546089d91212176939b8c0c0a7afc309 Ricardo Wurmus
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