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path: root/gnu/packages/bioconductor.scm
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2022-01-23gnu: r-abn: Update to 2.6-0....* gnu/packages/bioconductor.scm (r-abn): Update to 2.6-0. [propagated-inputs]: Add r-doparallel and r-foreach. Ricardo Wurmus
2022-01-23gnu: r-activepathways: Update to 1.0.4....* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.4. Ricardo Wurmus
2022-01-21gnu: r-bigmelon: Add r-knitr....* gnu/packages/bioconductor.scm (r-bigmelon)[native-inputs]: Add r-knitr. Ricardo Wurmus
2022-01-21gnu: Add r-hgu133plus2-db....* gnu/packages/bioconductor.scm (r-hgu133plus2-db): New variable. zimoun
2022-01-21gnu: Add r-jetset....* gnu/packages/bioconductor.scm (r-jetset): New variable. zimoun
2022-01-21gnu: r-org-dr-eg-db: Update to 3.14.0....* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.14.0. zimoun
2022-01-20gnu: r-rbowtie: Add missing input....* gnu/packages/bioconductor.scm (r-rbowtie)[inputs]: Add zlib. Ricardo Wurmus
2022-01-20gnu: r-pasilla: Use bioconductor-uri....* gnu/packages/bioconductor.scm (r-pasilla)[source]: Use bioconductor-uri. Ricardo Wurmus
2022-01-11gnu: Add r-transcriptr....* gnu/packages/bioconductor.scm (r-transcriptr): New variable. Ricardo Wurmus
2022-01-07gnu: r-sanssouci: Add source file-name....* gnu/packages/bioinformatics.scm (r-sanssourci)[source]: Add file-name field. Efraim Flashner
2022-01-06gnu: r-tximeta: Update to 1.12.4....* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.4. Ricardo Wurmus
2022-01-06gnu: r-tcgabiolinks: Update to 2.22.2....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.2. Ricardo Wurmus
2022-01-06gnu: r-biodb: Update to 1.2.2....* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.2. Ricardo Wurmus
2022-01-06gnu: r-sushi: Update to 1.32.0....* gnu/packages/bioconductor.scm (r-sushi): Update to 1.32.0. Ricardo Wurmus
2022-01-06gnu: r-bioassayr: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.1. Ricardo Wurmus
2022-01-06gnu: r-universalmotif: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.2. Ricardo Wurmus
2022-01-06gnu: r-cytolib: Update to 2.6.1....* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.1. Ricardo Wurmus
2022-01-06gnu: r-clusterprofiler: Update to 4.2.1....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.1. Ricardo Wurmus
2022-01-06gnu: r-icobra: Update to 1.22.2....* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.2. Ricardo Wurmus
2022-01-06gnu: r-destiny: Update to 3.8.0....* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.0. Ricardo Wurmus
2022-01-06gnu: r-diffbind: Update to 3.4.3....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.3. Ricardo Wurmus
2022-01-06gnu: r-systempiper: Update to 2.0.5....* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.5. Ricardo Wurmus
2022-01-06gnu: r-structuralvariantannotation: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.1. Ricardo Wurmus
2022-01-06gnu: r-genomicfeatures: Update to 1.46.3....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.3. Ricardo Wurmus
2022-01-06gnu: r-chipseeker: Update to 1.30.3....* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.3. Ricardo Wurmus
2022-01-06gnu: r-biocparallel: Update to 1.28.3....* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.3. Ricardo Wurmus
2022-01-06gnu: r-yapsa: Update to 1.20.1....* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.20.1. [propagated-inputs]: Remove r-pmcmr; add r-pmcmrplus. Ricardo Wurmus
2022-01-05gnu: r-activedriverwgs: Update to 1.0.3....* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3. Ricardo Wurmus
2022-01-05gnu: r-activedriverwgs: Update to 1.1.2....* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2. [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10. Ricardo Wurmus
2022-01-05gnu: r-valr: Update to 0.6.4....* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer. Ricardo Wurmus
2021-12-16gnu: Add r-singler....* gnu/packages/bioconductor.scm (r-singler): New variable. Ricardo Wurmus
2021-12-16gnu: Add r-celldex....* gnu/packages/bioconductor.scm (r-celldex): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-maftools....* gnu/packages/bioconductor.scm (r-maftools): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-tcgabiolinks....* gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-tcgabiolinksgui-data....* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable. Ricardo Wurmus
2021-12-13Merge branch 'core-updates-frozen' into 'master'....At last! Maxim Cournoyer
2021-12-13gnu: Further simplify package inputs....This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.) Ludovic Courtès
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-13gnu: Add r-chromvarmotifs....* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-12-13gnu: Add r-sanssouci....* gnu/packages/bioconductor.scm (r-sanssouci): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-isoformswitchanalyzer....* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-drimseq....* gnu/packages/bioconductor.scm (r-drimseq): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-dearseq....* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Marcel Schilling
2021-12-03gnu: r-flowclust: Add gsl....* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally committed comment character. Ricardo Wurmus
2021-12-02gnu: Add r-scdblfinder....* gnu/packages/bioconductor.scm (r-scdblfinder): New variable. Ricardo Wurmus
2021-12-01gnu: Add r-phyloseq....* gnu/packages/cran.scm (r-phyloseq): New variable Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Nicolas Vallet
2021-11-30gnu: Add r-fmcsr....* gnu/packages/bioconductor.scm (r-fmcsr): New variable. Ricardo Wurmus
2021-11-27gnu: Add r-xmapbridge....* gnu/packages/bioconductor.scm (r-xmapbridge): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-27gnu: Add r-xina....* gnu/packages/bioconductor.scm (r-xina): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-27gnu: Add r-stringdb....* gnu/packages/bioconductor.scm (r-stringdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
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