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2021-05-04gnu: r-mixomics: Update to 6.14.1....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1. [propagated-inputs]: Add r-biocparallel. Ricardo Wurmus
2021-05-04gnu: r-catalyst: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1. Ricardo Wurmus
2021-05-04gnu: r-scran: Update to 1.18.7....* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7. Ricardo Wurmus
2021-05-04gnu: r-biocpkgtools: Update to 1.8.2....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2. Ricardo Wurmus
2021-05-04gnu: r-experimenthub: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1. Ricardo Wurmus
2021-05-04gnu: r-bioassayr: Update to 1.28.3....* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3. Ricardo Wurmus
2021-05-04gnu: r-universalmotif: Update to 1.8.5....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5. Ricardo Wurmus
2021-05-04gnu: r-icobra: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1. Ricardo Wurmus
2021-05-04gnu: r-interactionset: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1. Ricardo Wurmus
2021-05-04gnu: r-systempiper: Update to 1.24.6....* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6. Ricardo Wurmus
2021-05-04gnu: r-genomeinfodb: Update to 1.26.7....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7. Ricardo Wurmus
2021-05-04gnu: r-biocgenerics: Update to 0.36.1....* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1. Ricardo Wurmus
2021-05-04gnu: r-abn: Update to 2.5-0....* gnu/packages/cran.scm (r-abn): Move from here... * gnu/packages/bioconductor.scm (r-abn): ...to here; update to 2.5-0. [propagated-inputs]: Add r-rgraphviz. Ricardo Wurmus
2021-04-21gnu: r-circrnaprofiler: Fix grammar....* gnu/packages/bioconductor.scm (r-circrnaprofiler)[description]: Remove gratuitous use of "allows to". Vagrant Cascadian
2021-04-21gnu: r-msmstests: Fix typo....* gnu/packages/bioconductor.scm (r-msmstests)[description]: Fix "This package" typo. Vagrant Cascadian
2021-04-12gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene....* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> hli
2021-04-10gnu: r-gagedata: Fix typo in synopsis....* gnu/packages/bioconductor.scm (r-gagedata)[synopsis]: Fix typo and add article. Tobias Geerinckx-Rice
2021-04-10gnu: r-chromstar: Fix typo in description....* gnu/packages/bioconductor.scm (r-chromstar)[description]: Fix typo. Tobias Geerinckx-Rice
2021-04-10gnu: r-msmstests: Fix typos in description....* gnu/packages/bioconductor.scm (r-msmstests)[description]: Fix typos. Tobias Geerinckx-Rice
2021-04-08gnu: r-gviz: Update to 1.34.1....* gnu/packages/bioconductor.scm (r-gviz): Update to 1.34.1. Ricardo Wurmus
2021-04-08gnu: r-universalmotif: Update to 1.8.4....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.4. Ricardo Wurmus
2021-04-08gnu: r-rsubread: Update to 2.4.3....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.3. Ricardo Wurmus
2021-04-08gnu: r-chippeakanno: Update to 3.24.2....* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.2. [propagated-inputs]: Add r-dplyr. Ricardo Wurmus
2021-04-08gnu: r-diffbind: Update to 3.0.15....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.15. Ricardo Wurmus
2021-04-08gnu: r-genomeinfodb: Update to 1.26.6....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.6. Ricardo Wurmus
2021-04-08gnu: r-delayedarray: Update to 0.16.3....* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3. Ricardo Wurmus
2021-03-31Revert "Revert some commits that caused `guix pull` to fail."...This reverts commit 8ec0ca8faff62f19426f22aeb1bd59a8950ca05a. zimoun
2021-03-31gnu: r-absfiltergsea: Move to (gnu packages bioconductor)....* gnu/packages/cran.scm (r-absfiltergsea): Move this variable from here... * gnu/packages/bioconductor.scm (r-absfiltergsea): ...to here. zimoun
2021-03-31gnu: r-bisquerna: Move to (gnu packages bioconductor)....* gnu/packages/cran.scm (r-bisquerna): Move this variable from here... * gnu/packages/bioconductor.scm (r-bisquerna): ...to here. zimoun
2021-03-22gnu: Add r-chromstar....* gnu/packages/bioconductor.scm (r-chromstar): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Hong Li
2021-03-22gnu: Add r-chromstardata....* gnu/packages/bioconductor.scm (r-chromstardata): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Hong Li
2021-03-15Revert some commits that caused `guix pull` to fail....This reverts commits 821e6439212f8e94580674eaaff2ce6752cd3b18 through 8f9fd9b70c7bf166d96a4b1dc8b427f8cdf040b5. Specifically, these commits caused the build failure of guix-package-cache.drv like this: ------ (repl-version 0 1 1) Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'... (exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f)) Leo Famulari
2021-03-15gnu: r-biocparallel: Build reproducibly....* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase "make-reproducible". Ricardo Wurmus
2021-03-15gnu: r-delayedarray: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here... * gnu/packages/bioconductor.scm (r-delayedarray): ...to here. zimoun
2021-03-15gnu: r-rsamtools: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here... * gnu/packages/bioconductor.scm (r-rsamtools): ...to here. zimoun
2021-03-15gnu: r-biostrings: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biostrings): Move from here... * gnu/packages/bioconductor.scm (r-biostrings): ...to here. zimoun
2021-03-15gnu: r-biocparallel: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here... * gnu/packages/bioconductor.scm (r-biocparallel): ...to here. zimoun
2021-03-15gnu: r-biomart: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biomart): Move from here... * gnu/packages/bioconductor.scm (r-biomart): ...to here. zimoun
2021-03-15gnu: r-annotationdbi: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here... * gnu/packages/bioconductor.scm (r-annotationdbi): ...to here. zimoun
2021-03-15gnu: r-biobase: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biobase): Move from here... * gnu/packages/bioconductor.scm (r-biobase): ...to here. zimoun
2021-03-15gnu: r-genomicranges: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here... * gnu/packages/bioconductor.scm (r-genomicranges): ...to here. zimoun
2021-03-15gnu: r-xvector: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-xvector): Move from here... * gnu/packages/bioconductor.scm (r-xvector): ...to here. zimoun
2021-03-15gnu: r-limma: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-limma): Move from here... * gnu/packages/bioconductor.scm (r-limma): ...to here. zimoun
2021-03-15gnu: r-scater: Update to 1.18.6....* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.6. Ricardo Wurmus
2021-03-15gnu: r-cytoml: Update to 2.2.2....* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.2. [inputs]: Add zlib. Ricardo Wurmus
2021-03-15gnu: r-diffbind: Update to 3.0.14....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14. Ricardo Wurmus
2021-03-15gnu: r-reportingtools: Update to 2.30.2....* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2. Ricardo Wurmus
2021-03-15gnu: r-genomeinfodb: Update to 1.26.4....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4. Ricardo Wurmus
2021-03-15gnu: r-deseq2: Update to 1.30.1....* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1. Ricardo Wurmus
2021-03-15gnu: r-variantannotation: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here... * gnu/packages/bioconductor.scm (r-variantannotation): ...to here. zimoun
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