| Age | Commit message (Expand) | Author |
|---|
| 2022-09-20 | gnu: r-activedriverwgs: Update to 1.2.0....* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.0.
| Ricardo Wurmus |
| 2022-09-20 | gnu: r-htscluster: Update to 2.0.10....* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.10.
| Ricardo Wurmus |
| 2022-09-20 | gnu: r-perfmeas: Update to 1.2.5....* gnu/packages/bioconductor.scm (r-perfmeas): Update to 1.2.5.
| Ricardo Wurmus |
| 2022-09-20 | gnu: r-valr: Update to 0.6.5....* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.5.
| Ricardo Wurmus |
| 2022-09-15 | gnu: Add r-omicade4....* gnu/packages/bioconductor.scm (r-omicade4): New variable.
| Ricardo Wurmus |
| 2022-09-15 | gnu: Add r-made4....* gnu/packages/bioconductor.scm (r-made4): New variable.
| Ricardo Wurmus |
| 2022-09-10 | gnu: Add comments to the bottom of a few package modules....This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.
If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.
* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
| Christopher Baines |
| 2022-09-06 | gnu: r-edger: Update to 3.38.4....* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.4.
[propagated-inputs]: Remove r-statmod.
| Efraim Flashner |
| 2022-09-05 | gnu: r-genomicalignments: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.1.
| Efraim Flashner |
| 2022-08-31 | gnu: Add r-milor....* gnu/packages/bioconductor.scm (r-milor): New variable.
| Ricardo Wurmus |
| 2022-08-29 | gnu: r-keggrest: Update to 1.36.3....* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.3.
| Efraim Flashner |
| 2022-08-28 | gnu: r-genomeinfodb: Update to 1.32.3....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.3.
| Efraim Flashner |
| 2022-08-28 | gnu: r-iranges: Update to 2.30.1....* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.1.
| Efraim Flashner |
| 2022-08-25 | gnu: Add r-scry....* gnu/packages/bioconductor.scm (r-scry): New variable.
| Ricardo Wurmus |
| 2022-08-23 | gnu: Add r-organism-dplyr....* gnu/packages/bioconductor.scm (r-organism-dplyr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-08-23 | gnu: Add r-bladderbatch....* gnu/packages/bioconductor.scm (r-bladderbatch): New variable.
| Ricardo Wurmus |
| 2022-08-23 | gnu: Add r-pcaexplorer....* gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
| Mădălin Ionel Patrașcu |
| 2022-08-23 | gnu: Add r-parathyroidse....* gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
| Mădălin Ionel Patrașcu |
| 2022-08-14 | gnu: Remove ‘open source’ from package descriptions....Also do some (trivial) editing where appropriate.
* gnu/packages/bioconductor.scm (r-anaquin, r-rcppnumerical)
[description]: Remove superfluous ‘open source’.
* gnu/packages/debian.scm (apt-mirror)[description]: Likewise.
Add @acronym{}. Drop obscure Ubuntu for famous Trisquel. Reorder.
* gnu/packages/documentation.scm (scrollkeeper)[description]:
Remove superfluous ‘open systems’. Keep ‘Open Source’ in standard name.
* gnu/packages/engineering.scm (freecad, cura-engine)[description]:
Remove superfluous ‘open source’ and excessive puffery.
* gnu/packages/firmware.scm (make-opensbi-package)
[synopsis]: Remove ‘Open Source’. Use @acronym{}.
[description]: Fix first sentence to follow guidelines. Use @acronym{}.
* gnu/packages/game-development.scm (ioquake3, recastnavigation):
[description]: Remove ‘open source’.
* gnu/packages/graphics.scm (skia)[description]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-s-sysdeps)[description]: Likewise.
* gnu/packages/machine-learning.scm (onnx)[description]: Likewise.
Use @acronym{}.
* gnu/packages/ocaml.scm (ocaml-cudf)[description]: Likewise.
| Tobias Geerinckx-Rice |
| 2022-08-14 | gnu: r-bgx: Build without CPU tuning....Fixes <https://issues.guix.gnu.org/57210>.
* gnu/packages/bioconductor.scm (r-bgx)[arguments]: Add phase
'do-not-tune-cflags-for-reproducibility to patch configure.ac.
[inputs]: Add boost.
[native-inputs]: Add autoconf and automake.
| Ricardo Wurmus |
| 2022-08-14 | gnu: r-lpsymphony: Build reproducibly....* gnu/packages/bioconductor.scm (r-lpsymphony)[arguments]: Add build phase
'make-build-order-reproducible.
| Ricardo Wurmus |
| 2022-08-10 | gnu: r-activepathways: Update to 1.1.1....* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.1.
| Ricardo Wurmus |
| 2022-08-09 | gnu: Add r-ciara....* gnu/packages/bioconductor.scm (r-ciara): New variable.
| Ricardo Wurmus |
| 2022-08-05 | gnu: Add r-biomartr....* gnu/packages/bioconductor.scm (r-biomartr): New variable.
| Ricardo Wurmus |
| 2022-08-01 | gnu: Add r-infercnv....* gnu/packages/bioconductor.scm (r-infercnv): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-08-01 | gnu: Add r-muscat....* gnu/packages/bioconductor.scm (r-muscat): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-08-01 | gnu: Add comma after “i.e.” in descriptions....* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after
“i.e.”.
* gnu/packages/code.scm (xenon)[description]: Same.
* gnu/packages/cran.scm (r-crosstalk)[description]: Same.
* gnu/packages/python-xyz.scm (python-radon)[description]: Same.
* gnu/packages/statistics.scm (r-logspline)[description]: Same.
* gnu/packages/suckless.scm (tabbed)[description]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-07-15 | gnu: r-affycompatible: Build reproducibly....* gnu/packages/bioconductor.scm (r-affycompatible)[arguments]: Sort XML
elements before generating R code from them.
| Ricardo Wurmus |
| 2022-07-04 | gnu: Add r-dittoseq....* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-tcgabiolinks: Update to 2.24.3....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-bionetstat: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-bgeedb: Update to 2.22.3....* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-ggbio: Update to 1.44.1....* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-rsubread: Update to 2.10.4....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-biosigner: Update to 1.24.2....* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-ropls: Update to 1.28.2....* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-genomicscores: Update to 2.8.2....* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-clusterprofiler: Update to 4.4.4....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-batchelor: Update to 1.12.3....* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-matrixgenerics: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-zellkonverter: Update to 1.6.3....* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-simplifyenrichment: Update to 1.6.1....* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-rtracklayer: Update to 1.56.1....* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-organismdbi: Update to 1.38.1....* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-limma: Update to 3.52.2....* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-ensembldb: Update to 2.20.2....* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
| Ricardo Wurmus |
| 2022-07-02 | gnu: r-restfulr: Update to 0.0.15....* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
| Ricardo Wurmus |
| 2022-07-01 | gnu: Add r-antiprofiles....* gnu/packages/bioconductor.scm (r-antiprofiles): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-07-01 | gnu: Add r-annmap....* gnu/packages/bioconductor.scm (r-annmap): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-07-01 | gnu: Add r-anf....* gnu/packages/bioconductor.scm (r-anf): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
