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path: root/gnu/packages/bioconductor.scm
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2022-01-05gnu: r-activedriverwgs: Update to 1.0.3....* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3. Ricardo Wurmus
2022-01-05gnu: r-activedriverwgs: Update to 1.1.2....* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2. [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10. Ricardo Wurmus
2022-01-05gnu: r-valr: Update to 0.6.4....* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer. Ricardo Wurmus
2021-12-16gnu: Add r-singler....* gnu/packages/bioconductor.scm (r-singler): New variable. Ricardo Wurmus
2021-12-16gnu: Add r-celldex....* gnu/packages/bioconductor.scm (r-celldex): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-maftools....* gnu/packages/bioconductor.scm (r-maftools): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-tcgabiolinks....* gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable. Ricardo Wurmus
2021-12-14gnu: Add r-tcgabiolinksgui-data....* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable. Ricardo Wurmus
2021-12-13Merge branch 'core-updates-frozen' into 'master'....At last! Maxim Cournoyer
2021-12-13gnu: Further simplify package inputs....This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.) Ludovic Courtès
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-13gnu: Add r-chromvarmotifs....* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-12-13gnu: Add r-sanssouci....* gnu/packages/bioconductor.scm (r-sanssouci): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-isoformswitchanalyzer....* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-drimseq....* gnu/packages/bioconductor.scm (r-drimseq): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-dearseq....* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Marcel Schilling
2021-12-03gnu: r-flowclust: Add gsl....* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally committed comment character. Ricardo Wurmus
2021-12-02gnu: Add r-scdblfinder....* gnu/packages/bioconductor.scm (r-scdblfinder): New variable. Ricardo Wurmus
2021-12-01gnu: Add r-phyloseq....* gnu/packages/cran.scm (r-phyloseq): New variable Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Nicolas Vallet
2021-11-30gnu: Add r-fmcsr....* gnu/packages/bioconductor.scm (r-fmcsr): New variable. Ricardo Wurmus
2021-11-27gnu: Add r-xmapbridge....* gnu/packages/bioconductor.scm (r-xmapbridge): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-27gnu: Add r-xina....* gnu/packages/bioconductor.scm (r-xina): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-27gnu: Add r-stringdb....* gnu/packages/bioconductor.scm (r-stringdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-11-26gnu: Add r-derfinderhelper....* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun
2021-11-24gnu: r-s4vectors: Update to 0.32.3....* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3. Ricardo Wurmus
2021-11-24gnu: r-mixomics: Update to 6.18.1....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1. Ricardo Wurmus
2021-11-24gnu: r-xcms: Update to 3.16.1....* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1. Ricardo Wurmus
2021-11-24gnu: r-dose: Update to 3.20.1....* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1. Ricardo Wurmus
2021-11-24gnu: r-genomicranges: Update to 1.46.1....* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1. Ricardo Wurmus
2021-11-24gnu: r-biocparallel: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.1. Ricardo Wurmus
2021-11-24gnu: r-biomart: Update to 2.50.1....* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.1. Ricardo Wurmus
2021-11-24gnu: Add r-bsgenome-drerio-ucsc-danrer11....* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New variable. Ricardo Wurmus
2021-11-18gnu: r-bgeecall: Fix typo....* gnu/packages/bioconductor.scm (r-bgeecall)[description]: Switch from "allows to generate" to "allows generating". Vagrant Cascadian
2021-11-18gnu: r-msfeatures: Fix typos....* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Switch from "allows to" to "can be used" and from "allows to aggregate" to "allows aggregating". Vagrant Cascadian
2021-11-18gnu: r-tximeta: Update to 1.12.3....* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.3. Ricardo Wurmus
2021-11-18gnu: r-biodb: Update to 1.2.1....* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1. Ricardo Wurmus
2021-11-18gnu: r-chromstar: Update to 1.20.2....* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2. Ricardo Wurmus
2021-11-18gnu: r-scran: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1. Ricardo Wurmus
2021-11-18gnu: r-hdf5array: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1. Ricardo Wurmus
2021-11-18gnu: r-s4vectors: Update to 0.32.2....* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2. Ricardo Wurmus
2021-11-18gnu: r-biocset: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1. Ricardo Wurmus
2021-11-18gnu: r-biocpkgtools: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2. Ricardo Wurmus
2021-11-18gnu: r-mixomics: Update to 6.18.0....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0. Ricardo Wurmus
2021-11-18gnu: r-rsubread: Update to 2.8.1....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1. Ricardo Wurmus
2021-11-18gnu: r-geoquery: Update to 2.62.1....* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1. [propagated-inputs]: Add r-r-utils. Ricardo Wurmus
2021-11-18gnu: r-icobra: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1. Ricardo Wurmus
2021-11-18gnu: r-ggtree: Update to 3.2.1....* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1. Ricardo Wurmus
2021-11-18gnu: r-treeio: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1. Ricardo Wurmus
2021-11-18gnu: r-systempiper: Update to 2.0.1....* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1. Ricardo Wurmus
2021-11-18gnu: r-msnbase: Update to 2.20.1....* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1. Ricardo Wurmus
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