| Age | Commit message (Expand) | Author |
|---|
| 2017-12-22 | gnu: Update r-mutationalpatterns to 1.4.2....* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.2.
| Roel Janssen |
| 2017-12-19 | gnu: r-biomart: Update to 2.34.1....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1.
[propagated-inputs]: Add r-httr.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-gviz: Update to 1.22.2....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-gqtlstats: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-rtracklayer: Update to 1.38.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-limma: Update to 3.34.4....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-edger: Update to 3.20.2....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-biocstyle: Update to 2.6.1....* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-dexseq: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-vegan: Update to 2.4-5....* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
| Ricardo Wurmus |
| 2017-12-18 | gnu: r-seurat: Update to 2.1.0....* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
| Ricardo Wurmus |
| 2017-12-18 | gnu: r-seurat: Fix ModularityOptimizer.jar....* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
| Ricardo Wurmus |
| 2017-12-15 | gnu: bedtools: Update to 2.27.1....* gnu/packages/ruby.scm (bedtools): Update to 2.27.1.
| Ben Woodcroft |
| 2017-12-14 | gnu: diamond: Update to 0.9.14....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.14.
| Ben Woodcroft |
| 2017-12-11 | gnu: Switch to using the version-major procedure....* gnu/packages/audio.scm (ardour)[arguments]: Switch to using version-major.
(hmmer)[source]: Switch to using version-major.
(pidgin)[native-search-paths]: Switch to using version-major.
(r-minimal)[source]: Switch to using version-major.
| Christopher Baines |
| 2017-12-09 | gnu: bedtools-2.18: Fix build....* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Restore custom
install phase.
Reported by Mark H Weaver <mhw@netris.org>.
| Ricardo Wurmus |
| 2017-12-06 | gnu: bedtools: Update to 2.27.0....* gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0.
[arguments]: Remove custom "install" phase; specify prefix.
| Ricardo Wurmus |
| 2017-12-03 | gnu: Add kallisto....* gnu/packages/bioinformatics.scm (kallisto): New variable.
| Ricardo Wurmus |
| 2017-11-30 | gnu: jellyfish: Update to 2.2.7....* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-annotationhub: Update to 2.10.1....* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-msnid: Update to 1.12.1....* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-maldiquant: Update to 1.17....* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-genomicalignments: Update to 1.14.1....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-limma: Update to 3.34.2....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-variantannotation: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-getopt: Update to 1.20.1....* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-gseabase: Update to 1.40.1....* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-dexseq: Update to 1.24.1....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-deseq2: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: r-annotate: Update to 1.56.1....* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
| Ricardo Wurmus |
| 2017-11-30 | gnu: metabat: Use scons-build-system....* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
| Arun Isaac |
| 2017-11-29 | gnu: Update r-mutationalpatterns to 1.4.1....* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.1.
| Roel Janssen |
| 2017-11-29 | gnu: Add r-copynumber....* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
| Roel Janssen |
| 2017-11-27 | gnu: Add java-picard-1.113....* gnu/packages/bioinformatics.scm (java-picard-1.113): New variable.
| Ricardo Wurmus |
| 2017-11-27 | gnu: Add java-picard....* gnu/packages/bioinformatics.scm (java-picard): New variable.
| Ricardo Wurmus |
| 2017-11-27 | gnu: java-htsjdk: Update to 2.3.0....* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.
| Ricardo Wurmus |
| 2017-11-27 | gnu: r-rhdf5: Fix build phase....* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.
| Ricardo Wurmus |
| 2017-11-23 | gnu: subread: Update to 1.6.0....* gnu/packages/bioinformatics.scm (subread): Update to 1.6.0.
| Ricardo Wurmus |
| 2017-11-21 | gnu: idr: Update to 2.0.3....* gnu/packages/bioinformatics.scm (idr): Update to 2.0.3.
[source]: Add snippet to remove generated code.
| Ricardo Wurmus |
| 2017-11-21 | gnu: idr: Correct license....* gnu/packages/bioinformatics.scm (idr)[license]: Change to GPLv2+.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-genomeinfodbdata: Update to 0.99.1....* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 0.99.1.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-go-db: Update to 3.5.0....* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.5.0.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-org-ce-eg-db: Update to 3.5.0....* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.5.0.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-org-dm-eg-db: Update to 3.5.0....* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.5.0.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-org-mm-eg-db: Update to 3.5.0....* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.5.0.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-genomationdata: Update to 1.10.0....* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.10.0.
| Ricardo Wurmus |
| 2017-11-18 | gnu: Remove duplicate from (gnu packages bioinformatics)....* gnu/packages/bioinformatics.scm (r-annotationfilter): Remove duplicate.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-org-hs-eg-db: Clarify description....* gnu/packages/bioinformatics.scm (r-org-hs-eg-db)[description]: Clarify.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-org-hs-eg-db: Update to 3.5.0....* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.5.0.
| Ricardo Wurmus |
| 2017-11-18 | gnu: r-org-hs-eg-db: Remove duplicate package definition....* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Remove duplicate variable.
| Ricardo Wurmus |
