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2017-01-30gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5....* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): New variable. Roel Janssen
2017-01-21gnu: r-vegan: Update to 2.4-2....* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-2. Ben Woodcroft
2017-01-21gnu: diamond: Update to 0.8.34....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.34. Ben Woodcroft
2017-01-20gnu: r-msnid: Expand abbreviation in description....* gnu/packages/bioinformatics.scm (r-msnid)[description]: Expand "MS/MS" to "tandem mass spectrometry". Ricardo Wurmus
2017-01-20gnu: r-msnbase: Expand abbreviation in description....* gnu/packages/bioinformatics.scm (r-msnbase)[description]: Expand "MS" to "mass spectrometry". Ricardo Wurmus
2017-01-18gnu: multiqc: Add python-nose to inputs....* gnu/packages/bioinformatics.scm (multiqc)[propagated-inputs]: Add python-nose. Ricardo Wurmus
2017-01-17gnu: Add r-msnid....* gnu/packages/bioinformatics.scm (r-msnid): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-msnbase....* gnu/packages/bioinformatics.scm (r-msnbase): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-pcamethods....* gnu/packages/bioinformatics.scm (r-pcamethods): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-mzid....* gnu/packages/bioinformatics.scm (r-mzid): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-vsn....* gnu/packages/bioinformatics.scm (r-vsn): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-affy....* gnu/packages/bioinformatics.scm (r-affy): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-affyio....* gnu/packages/bioinformatics.scm (r-affyio): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-mzr....* gnu/packages/bioinformatics.scm (r-mzr): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-protgenerics....* gnu/packages/bioinformatics.scm (r-protgenerics): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-maldiquant....* gnu/packages/bioinformatics.scm (r-maldiquant): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-raremetals2....* gnu/packages/bioinformatics.scm (r-raremetals2): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-seqminer....* gnu/packages/bioinformatics.scm (r-seqminer): New variable. Ricardo Wurmus
2017-01-17gnu: Add ribodiff....* gnu/packages/bioinformatics.scm (ribodiff): New variable. Ricardo Wurmus
2017-01-17gnu: Add hisat2....* gnu/packages/bioinformatics.scm (hisat2): New variable. Ricardo Wurmus
2017-01-16gnu: Add r-centipede....* gnu/packages/bioinformatics.scm (r-centipede): New variable. Ricardo Wurmus
2017-01-14gnu: Add r-sva....* gnu/packages/bioinformatics.scm (r-sva): New variable. Raoul Jean Pierre Bonnal
2017-01-12gnu: Add r-txdb-mmusculus-ucsc-mm10-knowngene....* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): New variable. Roel Janssen
2017-01-06gnu: Add r-copywriter....* gnu/packages/bioinformatics.scm (r-copywriter): New variable. Ricardo Wurmus
2017-01-06gnu: Add r-copyhelper....* gnu/packages/bioinformatics.scm (r-copyhelper): New variable. Ricardo Wurmus
2017-01-06gnu: Add r-chipseq....* gnu/packages/bioinformatics.scm (r-chipseq): New variable. Ricardo Wurmus
2017-01-06gnu: bioruby: Update to 1.5.1....* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1. Ben J Woodcroft
2017-01-06gnu: cd-hit: Update to 4.6.6....* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6. Ben J Woodcroft
2017-01-04gnu: Use HTTPS for all sourceforge.net home pages....* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS. * gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise. * gnu/packages/display-managers.scm (slim)[home-page]: Likewise. * gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise. * gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise. * gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix, ghc-regex-compat)[home-page]: Likewise. * gnu/packages/image.scm (imlib2)[home-page]: Likewise. * gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw) [home-page]: Likewise. * gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools) [home-page]: Likewise. * gnu/packages/mail.scm (esmtp)[home-page]: Likewise. * gnu/packages/mp3.scm (ripperx)[home-page]: Likewise. * gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise. * gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise. * gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise. * gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise. Tobias Geerinckx-Rice
2017-01-03gnu: r-genomicranges: Update to 1.26.2....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2. Roel Janssen
2017-01-03gnu: r-genomeinfodb: Update to 1.10.2....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2. Roel Janssen
2017-01-01gnu: python-dendropy: Update to 4.2.0....* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0. [source]: Remove patch. (python2-dendropy)[source]: Use the same source as python-dendropy. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ben Woodcroft
2017-01-01gnu: diamond: Update to 0.8.31....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31. Ben Woodcroft
2016-12-30gnu: multiqc: Update to 0.9....Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>. * gnu/packages/bioinformatics.scm (multiqc): Update to 0.9. [origin]: Add patch. * gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2016-12-29gnu: r-genomicfeatures: Update to 1.26.2....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2. Ricardo Wurmus
2016-12-29gnu: r-biostrings: Update to 2.42.1....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1. Ricardo Wurmus
2016-12-29gnu: r-limma: Update to 3.30.7....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7. Ricardo Wurmus
2016-12-29gnu: r-variantannotation: Update to 1.20.2....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2. Ricardo Wurmus
2016-12-29gnu: r-edger: Update to 3.16.5....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5. Ricardo Wurmus
2016-12-29gnu: r-genomeinfodb: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1. Ricardo Wurmus
2016-12-29gnu: r-iranges: Update to 2.8.1....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1. Ricardo Wurmus
2016-12-29gnu: r-s4vectors: Update to 0.12.1....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1. Ricardo Wurmus
2016-12-29gnu: r-biocstyle: Update to 2.2.1....* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1. Ricardo Wurmus
2016-12-29gnu: r-deseq2: Update to 1.14.1....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1. Ricardo Wurmus
2016-12-29gnu: r-annotate: Update to 1.52.1....* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1. [propagated-inputs]: Add r-rcurl. Ricardo Wurmus
2016-12-29gnu: r-qtl: Update to 1.40-8....* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8. Ricardo Wurmus
2016-12-27gnu: r-rcas: Update to 1.1.1....* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1. [propagated-inputs]: Add plotrix. Ricardo Wurmus
2016-12-27gnu: diamond: Update to 0.8.30....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30. Ben Woodcroft
2016-12-20gnu: cutadapt: Use ‘modify-phases’ syntax....* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Use ‘modify-phases’. Tobias Geerinckx-Rice
2016-12-19gnu: cutadapt: Update to 1.12....* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.12. [inputs]: Add python-xopen. Tobias Geerinckx-Rice
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