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2021-05-31gnu: r-seqlogo: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-seqlogo): Move from here... * gnu/packages/bioconductor.scm (r-seqlogo): ...to here.
2021-05-31gnu: r-motifrg: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-motifrg): Move from here... * gnu/packages/bioconductor.scm (r-motifrg): ...to here.
2021-05-31gnu: r-sva: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-sva): Move from here... * gnu/packages/bioconductor.scm (r-sva): ...to here.
2021-05-31gnu: r-protgenerics: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-protgenerics): Move from here... * gnu/packages/bioconductor.scm (r-protgenerics): ...to here.
2021-05-31gnu: r-mzr: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-mzr): Move from here... * gnu/packages/bioconductor.scm (r-mzr): ...to here.
2021-05-31gnu: r-ensembldb: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-ensembldb): Move from here... * gnu/packages/bioconductor.scm (r-ensembldb): ...to here.
2021-05-31gnu: r-biovizbase: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biovizbase): Move from here... * gnu/packages/bioconductor.scm (r-biovizbase): ...to here.
2021-05-31gnu: r-vsn: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-vsn): Move from here... * gnu/packages/bioconductor.scm (r-vsn): ...to here.
2021-05-31gnu: r-affyio: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-affyio): Move from here... * gnu/packages/bioconductor.scm (r-affyio): ...to here.
2021-05-31gnu: r-organismdbi: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-organismdbi): Move from here... * gnu/packages/bioconductor.scm (r-organismdbi): ...to here.
2021-05-31gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Move from here... * gnu/packages/bioconductor.scm (r-dirichletmultinomial): ...to here.
2021-05-31gnu: r-genomicfiles: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here... * gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
2021-05-31gnu: r-complexheatmap: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-complexheatmap): Move from here... * gnu/packages/bioconductor.scm (r-complexheatmap): ...to here.
2021-05-31gnu: r-gage: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-gage): Move from here... * gnu/packages/bioconductor.scm (r-gage): ...to here.
2021-05-31gnu: r-keggrest: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-keggrest): Move from here... * gnu/packages/bioconductor.scm (r-keggrest): ...to here.
2021-05-31gnu: r-affy: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-affy): Move from here... * gnu/packages/bioconductor.scm (r-affy): ...to here.
2021-05-31gnu: r-fastseg: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-fastseg): Move from here... * gnu/packages/bioconductor.scm (r-fastseg): ...to here.
2021-05-31gnu: r-annotationhub: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-annotationhub): Move from here... * gnu/packages/bioconductor.scm (r-annotationhub): ...to here.
2021-05-31gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Move from here... * gnu/packages/bioconductor.scm (r-interactivedisplaybase): ...to here.
2021-05-31gnu: r-edaseq: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-edaseq): Move from here... * gnu/packages/bioconductor.scm (r-edaseq): ...to here.
2021-05-31gnu: r-deseq: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-deseq): Move from here... * gnu/packages/bioconductor.scm (r-deseq): ...to here.
2021-05-31gnu: r-aroma-light: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-aroma-light): Move from here... * gnu/packages/bioconductor.scm (r-aroma-light): ...to here.
2021-05-31gnu: r-mzid: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-mzid): Move from here... * gnu/packages/bioconductor.scm (r-mzid): ...to here.
2021-05-31gnu: r-pcamethods: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-pcamethods): Move from here... * gnu/packages/bioconductor.scm (r-pcamethods): ...to here.
2021-05-31gnu: r-genomationdata: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here... * gnu/packages/bioconductor.scm (r-genomationdata): ...to here. [source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31gnu: r-genomation: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomation): Move from here... * gnu/packages/bioconductor.scm (r-genomation): ...to here.
2021-05-31gnu: r-go-db: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-go-db): Move from here... * gnu/packages/bioconductor.scm (r-go-db): ...to here. [source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
2021-05-31gnu: r-seqpattern: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here... * gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
2021-05-31gnu: r-impute: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-impute): Move from here... * gnu/packages/bioconductor.scm (r-impute): ...to here.
2021-05-31gnu: r-msnbase: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-msnbase): Move from here... * gnu/packages/bioconductor.scm (r-msnbase): ...to here.
2021-05-31gnu: r-msnid: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-msnid): Move from here... * gnu/packages/bioconductor.scm (r-msnid): ...to here.
2021-05-31gnu: r-bsgenome: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
2021-05-31gnu: r-topgo: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-topgo): Move from here... * gnu/packages/bioconductor.scm (r-topgo): ...to here.
2021-05-31gnu: r-genomicfeatures: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Move from here... * gnu/packages/bioconductor.scm (r-genomicfeatures): ...to here.
2021-05-31gnu: r-rtracklayer: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rtracklayer): Move from here... * gnu/packages/bioconductor.scm (r-rtracklayer): ...to here.
2021-05-31gnu: r-genomicalignments: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomicalignments): Move from here... * gnu/packages/bioconductor.scm (r-genomicalignments): ...to here.
2021-05-29gnu: Add mosaicatcher.Ricardo Wurmus
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-29Revert "gnu: Add mosaicatcher."Christopher Baines
mosaicatcher-unbundle-htslib.patch is missing. This reverts commit b1ae0f30d856503fa311d380584a6d7c80559332.
2021-05-28gnu: Add mosaicatcher.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-27gnu: Add python-pyega3.Roel Janssen
* gnu/packages/bioinformatics.scm (python-pyega3): New variable.
2021-05-27gnu: Add python-htsget.Roel Janssen
* gnu/packages/bioinformatics.scm (python-htsget): New variable.
2021-05-26gnu: minimap2: Install more files.Efraim Flashner
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Add modules. Adjust custom 'install phase to also install library, headers and a pkg-config file.
2021-05-26gnu: minimap2: Update to 2.18.Efraim Flashner
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18. [source]: Remove patch. * gnu/packages/patches/minimap2-aarch64-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-26gnu: Add r-phantompeakqualtools.Roel Janssen
* gnu/packages/bioinformatics.scm (r-phantompeakqualtools): New variable.
2021-05-26gnu: Add r-spp.Roel Janssen
* gnu/packages/bioinformatics.scm (r-spp): New variable.
2021-05-20gnu: r-rhdf5filters: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Update to 1.2.1.
2021-05-17gnu: pigx-chipseq: Update to 0.0.52.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.52.
2021-05-14gnu: prinseq: Fix references to perl executable.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (prinseq)[arguments]: Embed concrete references to the "perl" executable.
2021-05-07gnu: Add ensembl-vep.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ensembl-vep): New variable.
2021-05-06gnu: Add perl-bio-db-hts.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (perl-bio-db-hts): New variable.
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