| Age | Commit message (Expand) | Author |
|---|
| 2016-04-05 | gnu: vcftools: Update to 0.1.14....* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.14.
[arguments]: Do not modify phases as it is not needed anymore.
[native-inputs]: Add 'pkg-config'.
[home-page]: Update to new location.
Signed-off-by: Alex Kost <alezost@gmail.com>
| Roel Janssen |
| 2016-03-30 | gnu: python2-pbcore: Update to 1.2.8....* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8.
[native-inputs]: Add python2-docutils, python2-nose, python2-sphinx.
| Efraim Flashner |
| 2016-03-30 | gnu: r-genomation: Update to 1.2.2....* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.2.2.
| Ricardo Wurmus |
| 2016-03-30 | gnu: r-genomicfeatures: Update to 1.22.13....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
1.22.13.
| Ricardo Wurmus |
| 2016-03-30 | gnu: r-rtracklayer: Update to 1.30.4....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.30.4.
| Ricardo Wurmus |
| 2016-03-30 | gnu: r-genomicalignments: Update to 1.6.3....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.6.3.
| Ricardo Wurmus |
| 2016-03-30 | gnu: r-summarizedexperiment: Update to 1.0.2....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.0.2.
| Ricardo Wurmus |
| 2016-03-30 | gnu: r-biostrings: Update to 2.38.4....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.38.4.
| Ricardo Wurmus |
| 2016-03-30 | gnu: r-genomicranges: Update to 1.22.4....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.22.4.
| Ricardo Wurmus |
| 2016-03-30 | gnu: r-genomeinfodb: Update to 1.6.3....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.6.3.
| Ricardo Wurmus |
| 2016-03-24 | gnu: Remove "r-repository" property....* gnu/packages/bioinformatics.scm (r-biocgenerics, r-s4vectors,
r-iranges, r-genomeinfodb, r-xvector, r-genomicranges)[properties]:
Remove "r-repository" property.
| Ricardo Wurmus |
| 2016-03-18 | gnu: r-dnacopy: Fix home page URL....* gnu/packages/bioinformatics.scm (r-dnacopy)[home-page]: Add missing
URI scheme.
| Ludovic Courtès |
| 2016-03-17 | gnu: bless: Remove bundled sources for sparsehash....* gnu/packages/bioinformatics.scm (bless)[source]: Delete
"google-sparsehash" sources.
[inputs]: Add "sparsehash".
| Ricardo Wurmus |
| 2016-03-17 | gnu: Add CD-HIT....* gnu/packages/bioinformatics.scm (cd-hit): New variable.
| Ricardo Wurmus |
| 2016-03-16 | gnu: Add r-dnacopy....* gnu/packages/bioinformatics.scm (r-dnacopy): New variable.
| Roel Janssen |
| 2016-03-16 | gnu: Add codingquarry....* gnu/packages/bioinformatics.scm (codingquarry): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Rob Syme |
| 2016-03-14 | gnu: htsjdk: Use ant-build-system....* gnu/packages/bioinformatics.scm (htsjdk)[build-system]: Use
ant-build-system.
[arguments]: Adapt for ant-build-system.
| Ricardo Wurmus |
| 2016-03-14 | gnu: Add pyicoteo....* gnu/packages/bioinformatics.scm (pyicoteo): New variable.
| Ricardo Wurmus |
| 2016-03-10 | gnu: Add bioawk....* gnu/packages/bioinformatics.scm (bioawk): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Roel Janssen |
| 2016-03-03 | gnu: python-pysam: Move cython and setuptools to native inputs....* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move
"python-cython" and "python-setuptools" from here...
[native-inputs]: ... to here.
| Ricardo Wurmus |
| 2016-03-03 | gnu: deeptools: Update to 2.1.1....* gnu/packages/bioinformatics.scm (deeptools): Update to 2.1.1.
[inputs]: Add "python2-numpydoc" and "python2-pybigwig".
| Ricardo Wurmus |
| 2016-03-03 | gnu: deeptools: Change "propagated-inputs" to "inputs"....* gnu/packages/bioinformatics.scm (deeptools)[propagated-inputs]: Move
all inputs from here...
[inputs]: ...to here.
| Ricardo Wurmus |
| 2016-03-03 | gnu: Add python-pybigwig....* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig):
New variables.
| Ricardo Wurmus |
| 2016-03-03 | gnu: python-pysam: Update to 0.8.4....* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.8.4.
| Ricardo Wurmus |
| 2016-03-03 | gnu: python-pysam, python2-pysam: Move to bioinformatics.scm....* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
...here.
| Ricardo Wurmus |
| 2016-03-01 | gnu: r-go-db: Bioconductor changed URL for data downloads....* gnu/packages/bioinformatics.scm (r-go-db)[source]: Update data URL.
| Pjotr Prins |
| 2016-03-01 | gnu: r-iranges: Update to 2.4.8....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.4.8.
| Pjotr Prins |
| 2016-03-01 | gnu: r-s4vectors: Update to 0.8.11....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.8.11.
| Pjotr Prins |
| 2016-03-01 | gnu: Add PePr....* gnu/packages/bioinformatics.scm (pepr): New variable.
| Ricardo Wurmus |
| 2016-03-01 | gnu: Add bwa-pssm....* gnu/packages/bioinformatics.scm (bwa-pssm): New variable.
| Ricardo Wurmus |
| 2016-02-27 | gnu: Fix misplaced commas (unquote)....Fix many occurrences of comma (unquote) being placed immediately after the
previous list item, e.g. ("ncurses", ncurses) in the inputs.
* gnu/packages/base.scm (patch, gnu-make),
gnu/packages/bioinformatics.scm (hmmer),
gnu/packages/bittorrent.scm (aria2),
gnu/packages/compression.scm (pbzip2),
gnu/packages/databases.scm (recutils),
gnu/packages/fonts.scm (font-terminus),
gnu/packages/freedesktop.scm (xdg-utils, elogind),
gnu/packages/games.scm (gnujump),
gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit),
gnu/packages/gnunet.scm (gnunet),
gnu/packages/gnuzilla.scm (mozjs, nspr),
gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf),
gnu/packages/lua.scm (lua),
gnu/packages/openstack.scm (python-swiftclient),
gnu/packages/perl.scm (perl-json-any),
gnu/packages/polkit.scm (polkit-qt),
gnu/packages/python.scm (wrap-python3, python-oauthlib)
(python-mccabe-0.2.1, python-contextlib2, python2-rauth),
gnu/packages/qt.scm (qtkeychain),
gnu/packages/ruby.scm (ruby-nokogiri),
gnu/packages/screen.scm (screen),
gnu/packages/ssh.scm (libssh),
gnu/packages/video.scm (ffmpeg, mplayer),
gnu/packages/vim.scm (vim),
gnu/packages/xdisorg.scm (redshift),
gnu/packages/xfce.scm (xfce4-panel, xfce4-settings),
gnu/packages/xnee.scm (xnee),
gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi),
gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote).
| Mark H Weaver |
| 2016-02-25 | gnu: Add missing import in bioinformatics.scm....This is a followup to 1baee94.
* gnu/packages/bioinformatics.scm: Add missing import.
| Ludovic Courtès |
| 2016-02-25 | gnu: Add libBigWig....* gnu/packages/bioinformatics.scm (libbigwig): New variable.
| Ricardo Wurmus |
| 2016-02-24 | gnu: r-topgo: Add missing input....* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
"r-graph".
| Ricardo Wurmus |
| 2016-02-24 | gnu: Add r-graph....* gnu/packages/bioinformatics.scm (r-graph): New variable.
| Ricardo Wurmus |
| 2016-02-24 | gnu: Add r-org-mm-eg-db....* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
| Ricardo Wurmus |
| 2016-02-24 | gnu: Add r-org-dm-eg-db....* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
| Ricardo Wurmus |
| 2016-02-24 | gnu: Add r-org-ce-eg-db....* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
| Ricardo Wurmus |
| 2016-02-24 | gnu: Add r-org-hs-eg-db....* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
| Ricardo Wurmus |
| 2016-02-16 | gnu: htseq: Add PySam to inputs....* gnu/packages/bioinformatics.scm (htseq)[inputs]: Add "python2-pysam".
| Ricardo Wurmus |
| 2016-02-16 | gnu: Add StringTie....* gnu/packages/bioinformatics.scm (stringtie): New variable.
| Ricardo Wurmus |
| 2016-02-16 | gnu: prodigal: Update to 2.6.3....* gnu/packages/bioinformatics.scm (prodigal): Update to 2.6.3.
| Ben Woodcroft |
| 2016-02-15 | gnu: r-annotationdbi: Update to 1.32.3....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.32.3.
| Ricardo Wurmus |
| 2016-02-15 | gnu: vsearch: Update to 1.10.0....* gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0.
[origin]: Adapt to changes in bundling of cityhash.
| Ben Woodcroft |
| 2016-02-12 | gnu: macs: Update to 2.1.0.20151222....* gnu/packages/bioinformatics.scm (macs): Update to 2.1.0.20151222.
| Ricardo Wurmus |
| 2016-02-12 | gnu: macs: Use "pypi-uri"....* gnu/packages/bioinformatics.scm (macs)[source]: Use "pypi-uri" to
build source URI.
| Ricardo Wurmus |
| 2016-02-02 | gnu: Update sortmerna to 2.1....* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1.
| Ben J. Woodcroft |
| 2016-01-26 | gnu: sra-tools: Update to 2.5.7....* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
| Ben Woodcroft |
| 2016-01-26 | gnu: ncbi-vdb: Update to 2.5.7....gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
| Ben Woodcroft |
| 2016-01-26 | gnu: ngs-sdk: Update to 1.2.3....gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
| Ben Woodcroft |
