| Age | Commit message (Expand) | Author |
|---|
| 2018-06-22 | gnu: Use more HTTPS....* gnu/packages/admin.scm (net-base, wakelan, pam-krb5)
[home-page]: Use HTTPS.
(dfc, libpcap, tcpdump, wpa-supplicant-minimal, libcap-ng, audit)
[source, home-page]: Likewise.
* gnu/packages/algebra.scm (eigen)[home-page]: Likewise.
(gp2c, pari-gp)[source, home-page]: Likewise.
* gnu/packages/animation.scm (etl, synfig, synfigstudio, papagayo)
[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (tadbit)[home-page]: Likewise.
| Tobias Geerinckx-Rice |
| 2018-06-22 | gnu: pigx-chipseq: Update to 0.0.17....* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.17.
[arguments]: Remove "wrap-executable" phase.
| Ricardo Wurmus |
| 2018-06-22 | Do not record store file name in bioinformatics.scm....* gnu/packages/bioinformatics.scm (dropseq-tools): Replace full store
file name with ellipses.
| Ludovic Courtès |
| 2018-06-21 | gnu: r-complexheatmap: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.1.
| Ricardo Wurmus |
| 2018-06-21 | gnu: r-delayedarray: Update to 0.6.1....* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.1.
| Ricardo Wurmus |
| 2018-06-21 | gnu: r-optparse: Update to 1.6.0....* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.6.0.
| Ricardo Wurmus |
| 2018-06-21 | gnu: r-biocviews: Update to 1.48.2....* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.2.
| Ricardo Wurmus |
| 2018-06-16 | gnu: pigx-chipseq: Update to 0.0.16....* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.16.
| Ricardo Wurmus |
| 2018-06-14 | gnu: Add minimap2....* gnu/packages/bioinformatics.scm (minimap2): New variable.
| Ricardo Wurmus |
| 2018-06-14 | gnu: pigx-bsseq: Update to 0.0.9....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.9.
| Ricardo Wurmus |
| 2018-06-13 | gnu: pigx-scrnaseq: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-seurat: Update to 2.3.2....* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-s4vectors: Update to 0.18.3....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-biocviews: Update to 1.48.1....* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
| Ricardo Wurmus |
| 2018-06-08 | gnu: rcas-web: Update to 0.0.5....* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.0.5.
| Ricardo Wurmus |
| 2018-06-07 | gnu: r-rcas: Update to 1.6.0....* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.6.0.
[source]: Fetch from bioconductor.
[native-inputs]: Remove r-knitr.
[propagated-inputs]: Add r-biocgenerics, r-biostrings, r-cowplot, r-dbi,
r-ggseqlogo, r-knitr, r-pheatmap, r-proxy, r-rsqlite, and r-s4vectors.
| Ricardo Wurmus |
| 2018-06-07 | gnu: star: Update to 2.6.0c....* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c.
[source]: Fetch from git.
| Ricardo Wurmus |
| 2018-06-05 | Merge branch 'master' into core-updates | Ricardo Wurmus |
| 2018-06-05 | gnu: Add sjcount....* gnu/packages/bioinformatics.scm (sjcount): New variable.
| Ricardo Wurmus |
| 2018-06-05 | gnu: dropseq-tools: Remove failing phase....* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete
"generate-jar-indices" phase.
| Ricardo Wurmus |
| 2018-06-05 | gnu: pigx-scrnaseq: Use only one variant of Picard....* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"java-picard" with "java-picard-2.10.3".
| Ricardo Wurmus |
| 2018-06-05 | gnu: java-picard: Delete failing build phase....* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
| Ricardo Wurmus |
| 2018-06-05 | gnu: java-picard-1.113: Delete failing build phase....* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete
"generate-jar-indices" build phase.
| Ricardo Wurmus |
| 2018-06-05 | gnu: java-picard-2.10.3: Delete failing build phase....* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
| Ricardo Wurmus |
| 2018-06-05 | Merge branch 'master' into core-updates | Ricardo Wurmus |
| 2018-06-05 | gnu: r-rtracklayer: Update to 1.40.3....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
| Ricardo Wurmus |
| 2018-06-05 | gnu: r-methylkit: Update to 1.6.1....* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
| Ricardo Wurmus |
| 2018-06-05 | gnu: r-bamsignals: Update to 1.12.1....* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
| Ricardo Wurmus |
| 2018-06-02 | Merge branch 'master' into core-updates | Ricardo Wurmus |
| 2018-06-02 | gnu: r-scater: Update to 1.8.0....* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-scran: Update to 1.8.2....* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-delayedmatrixstats: Update to 1.2.0....* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-singlecellexperiment: Update to 1.2.0....* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-beachmat: Update to 1.2.1....* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-rhdf5lib: Update to 1.2.1....* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-hdf5array: Update to 1.8.0....* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-qvalue: Update to 2.12.0....* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-hitc: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-fithic: Update to 1.6.0....* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-sushi: Update to 1.18.0....* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-gwascat: Update to 2.12.0....* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-gviz: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-gqtlstats: Update to 1.12.0....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-ldblock: Update to 1.10.0....* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-erma: Update to 0.12.0....* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-snpstats: Update to 1.30.0....* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-gqtlbase: Update to 1.12.0....* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-ggbio: Update to 1.28.0....* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-biovizbase: Update to 1.28.0....* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
| Ricardo Wurmus |
| 2018-06-02 | gnu: r-organismdbi: Update to 1.22.0....* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
| Ricardo Wurmus |
