| Age | Commit message (Expand) | Author |
|---|
| 2016-09-04 | gnu: infernal: Limit to i686 and x86_64 systems....* gnu/packages/bioinformatics.scm (infernal)[supported-systems]: The
package requires VMX or SSE capability for parallel instructions, so
limit it to those supported systems.
| Efraim Flashner |
| 2016-09-02 | gnu: Add Infernal....* gnu/packages/bioinformatics.scm (infernal): New variable.
| Ricardo Wurmus |
| 2016-08-31 | gnu: subread: Update to 1.5.1....* gnu/packages/bioinformatics.scm (subread): Update to 1.5.1.
| Ricardo Wurmus |
| 2016-08-31 | gnu: aragorn: Update to 1.2.37....* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.37.
| Ben Woodcroft |
| 2016-08-30 | gnu: diamond: Update to 0.8.20....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.20.
| Ben Woodcroft |
| 2016-08-22 | gnu: Add r-bamsignals....* gnu/packages/bioinformatics.scm (r-bamsignals): New variable.
| Ricardo Wurmus |
| 2016-08-22 | gnu: Add r-rhtslib....* gnu/packages/bioinformatics.scm (r-rhtslib): New variable.
| Ricardo Wurmus |
| 2016-08-17 | gnu: clipper: Update to 1.1....* gnu/packages/bioinformatics.scm (clipper): Update to 1.1.
[source]: Delete pre-built libraries.
[inputs]: Add python2-pandas.
| Ricardo Wurmus |
| 2016-08-17 | gnu: Add minced....* gnu/packages/bioinformatics.scm (minced): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
| Marius Bakke |
| 2016-08-16 | gnu: mafft: Update to 7.305....* gnu/packages/bioinformatics.scm (mafft): Update to 7.305.
[inputs]: Add ruby.
| Ben Woodcroft |
| 2016-08-15 | gnu: mafft: Update to 7.304....* gnu/packages/bioinformatics.scm (mafft): Update to 7.304.
| Ben Woodcroft |
| 2016-08-15 | gnu: mafft: Wrap programs....* gnu/packages/bioinformatics.scm (mafft)[arguments]: Add 'wrap-programs'
phase.
[propagated-inputs]: Move coreutils from here ...
[inputs]: ... to here.
| Ben Woodcroft |
| 2016-08-15 | gnu: mafft: Update to 7.300....* gnu/packages/bioinformatics.scm (mafft): Update to 7.300.
| Ben Woodcroft |
| 2016-08-14 | gnu: Add bamm....* gnu/packages/bioinformatics.scm (bamm): New variable.
| Ben Woodcroft |
| 2016-08-11 | gnu: snap-aligner: Limit to x86_64....* gnu/packages/bioinformatics.scm (snap-aligner)[supported-systems]: Add
note explaining why we build for x86_64 only.
| Efraim Flashner |
| 2016-08-11 | gnu: diamond: Update to 0.8.18....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.18.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add roary....* gnu/packages/bioinformatics.scm (roary): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add raxml....* gnu/packages/bioinformatics.scm (raxml): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add prank....* gnu/packages/bioinformatics.scm (prank): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add exonerate....* gnu/packages/bioinformatics.scm (exonerate): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add bppsuite....* gnu/packages/bioinformatics.scm (bppsuite): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add bpp-popgen....* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add bpp-phyl....* gnu/packages/bioinformatics.scm (bpp-phyl): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add bpp-seq....* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
| Ben Woodcroft |
| 2016-08-08 | gnu: Add bpp-core....* gnu/packages/bioinformatics.scm (bpp-core): New variable.
| Ben Woodcroft |
| 2016-08-06 | gnu: Add python-biom-format....* gnu/packages/bioinformatics.scm (python-biom-format,
python2-biom-format): New variables.
| Ben Woodcroft |
| 2016-08-03 | gnu: Add discrover....* gnu/packages/bioinformatics.scm (discrover): New variable.
| Ricardo Wurmus |
| 2016-08-03 | gnu: fxtract: Restrict to x86_64-linux....* gnu/packages/bioinformatics.scm (fxtract)[supported-systems]: Restrict to
x86_64-linux.
| Ben Woodcroft |
| 2016-08-02 | gnu: r-variantannotation: Update to 1.18.6....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.6.
| Ricardo Wurmus |
| 2016-08-02 | gnu: r-genomationdata: Update to 1.4.2....* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.4.2.
| Ricardo Wurmus |
| 2016-07-30 | gnu: diamond: Update to 0.8.17....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.17.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-genomicfeatures: Update to 1.24.5....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-bsgenome: Update to 1.40.1....* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-iranges: Update to 2.6.1....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-limma: Update to 3.28.17....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-xvector: Update to 0.12.1....* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-genomicranges: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-annotationdbi: Update to 1.34.4....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-biocparallel: Update to 1.6.3....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-biostrings: Update to 2.40.2....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-summarizedexperiment: Update to 1.2.3....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-genomicalignments: Update to 1.8.4....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-rtracklayer: Update to 1.32.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-genomeinfodb: Update to 1.8.3....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-s4vectors: Update to 0.10.2....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
| Ben Woodcroft |
| 2016-07-27 | gnu: diamond: Update to 0.8.16....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
| Ben Woodcroft |
| 2016-07-23 | gnu: fasttree: Update to 2.1.9....* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.9.
| Ben Woodcroft |
| 2016-07-21 | gnu: Update URLs for sourceforge.net....* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
| Leo Famulari |
| 2016-07-18 | gnu: diamond: Update to 0.8.15....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.15.
| Ben Woodcroft |
| 2016-07-17 | gnu: eigensoft: Do not refer to "lapacke" output....* gnu/packages/bioinformatics.scm (eigensoft)[inputs]: Remove reference
to non-existing "lapacke" output.
| Ricardo Wurmus |
