| Age | Commit message (Expand) | Author |
|---|
| 2018-02-16 | gnu: diamond: Update to 0.9.18....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.18.
| Ben Woodcroft |
| 2018-02-14 | gnu: vsearch: Update to 2.7.0....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.0.
| Ben Woodcroft |
| 2018-02-13 | gnu: r-gprofiler: Update to 0.6.3....* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.3.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-ensembldb: Update to 2.2.1....* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.1.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-gage: Update to 2.28.2....* gnu/packages/bioinformatics.scm (r-gage): Update to 2.28.2.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-keggrest: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.18.1.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-seurat: Update to 2.2.0....* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.0.
[propagated-inputs]: Remove r-ggjoy; add r-rcppeigen and r-ggridges.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-msnbase: Update to 2.4.2....* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.2.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-methylkit: Update to 1.4.1....* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.1.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-gkmsvm: Update to 0.79.0....* gnu/packages/bioinformatics.scm (r-gkmsvm): Update to 0.79.0.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-wgcna: Update to 1.62....* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.62.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-genomation: Update to 1.11.3....* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.11.3.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-genomicfeatures: Update to 1.30.3....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.3.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-rtracklayer: Update to 1.38.3....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.3.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-summarizedexperiment: Update to 1.8.1....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.1.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-biomart: Update to 2.34.2....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.2.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-genomicranges: Update to 1.30.1....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.1.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-limma: Update to 3.34.8....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.8.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-variantannotation: Update to 1.24.5....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.5.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-edger: Update to 3.20.8....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.8.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-bookdown: Update to 0.6....* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.6.
[propagated-inputs]: Add r-xfun and ghc-pandoc.
| Ricardo Wurmus |
| 2018-02-13 | gnu: r-vegan: Update to 2.4-6....* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-6.
| Ricardo Wurmus |
| 2018-02-12 | gnu: Add r-scran....* gnu/packages/bioinformatics.scm (r-scran): New variable.
| Ricardo Wurmus |
| 2018-02-12 | gnu: Add r-scater....* gnu/packages/bioinformatics.scm (r-scater): New variable.
Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
| Ricardo Wurmus |
| 2018-02-12 | gnu: Add r-singlecellexperiment....* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
| Ricardo Wurmus |
| 2018-02-12 | gnu: Add r-beachmat....* gnu/packages/bioinformatics.scm (r-beachmat): New variable.
| Ricardo Wurmus |
| 2018-02-12 | gnu: Add r-rhdf5lib....* gnu/packages/bioinformatics.scm (r-rhdf5lib): New variable.
| Ricardo Wurmus |
| 2018-02-11 | gnu: Add r-hdf5array....* gnu/packages/bioinformatics.scm (r-hdf5array): New variable.
| Ricardo Wurmus |
| 2018-02-02 | gnu: diamond: Update to 0.9.17....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.17.
| Ben Woodcroft |
| 2018-01-27 | gnu: diamond: Update to 0.9.16....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.16.
| Ben Woodcroft |
| 2018-01-26 | gnu: diamond: Update to 0.9.15....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.15.
| Ben Woodcroft |
| 2018-01-26 | gnu: deeptools: Update URI....* gnu/packages/bioinformatics.scm (deeptools)[source, home-page]: Update
URI.
| Tobias Geerinckx-Rice |
| 2018-01-22 | gnu: star: Make reproducible....* gnu/packages/bioinformatics.scm (star)[arguments]: Add build phase
"make-reproducible".
| Ricardo Wurmus |
| 2018-01-22 | gnu: khmer: Add aarch64-linux to supported systems....* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: Add
aarch64-linux to the supported systems.
| Efraim Flashner |
| 2018-01-21 | gnu: Add salmon....* gnu/packages/bioinformatics.scm (libstadenio-for-salmon,
spdlog-for-salmon, bwa-for-salmon, salmon): New variables.
| Ricardo Wurmus |
| 2018-01-21 | gnu: Add sailfish....* gnu/packages/bioinformatics.scm (sailfish): New variable.
| Ricardo Wurmus |
| 2018-01-21 | gnu: Add libdivsufsort....* gnu/packages/bioinformatics.scm (libdivsufsort): New variable.
| Ricardo Wurmus |
| 2018-01-21 | gnu: Add libgff....* gnu/packages/bioinformatics.scm (libgff): New variable.
| Ricardo Wurmus |
| 2018-01-10 | gnu: seqmagick: Use 'pypi-uri'....* gnu/packages/bioinformatics.scm (seqmagick)[source]: Use 'pypi-uri'.
| Ben Woodcroft |
| 2018-01-10 | gnu: mafft: Update to 7.313....* gnu/packages/bioinformatics.scm (mafft): Update to 7.313.
[source]: Use HTTPS URI.
| Ben Woodcroft |
| 2018-01-09 | gnu: seqmagick: Update to 0.7.0....* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.7.0. Use
python-3.
[arguments]: Remove replacement phase for check.
[inputs]: Add biopython. Remove python2-biopython-1.66.
(python2-biopython-1.66): Remove variable.
| Ben Woodcroft |
| 2018-01-02 | gnu: htslib: Mark up description....* gnu/packages/bioinformatics.scm (htslib)[description]: Use @command{}.
| Tobias Geerinckx-Rice |
| 2018-01-02 | gnu: ribotaper: Wrap executables....* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Add phase
"wrap-executables".
| Ricardo Wurmus |
| 2018-01-02 | gnu: python-pysam: Update to 0.13.0....* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.13.0.
| Tobias Geerinckx-Rice |
| 2018-01-02 | gnu: htslib: Update to 1.6....* gnu/packages/bioinformatics.scm (htslib): Update to 1.6.
| Tobias Geerinckx-Rice |
| 2017-12-27 | gnu: vsearch: Update to 2.6.2....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.2.
| Ben Woodcroft |
| 2017-12-24 | gnu, doc: Use HTTPS for cran.r-project.org home pages....* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
| Tobias Geerinckx-Rice |
| 2017-12-22 | gnu: Update r-mutationalpatterns to 1.4.2....* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.2.
| Roel Janssen |
| 2017-12-19 | gnu: r-biomart: Update to 2.34.1....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1.
[propagated-inputs]: Add r-httr.
| Ricardo Wurmus |
| 2017-12-19 | gnu: r-gviz: Update to 1.22.2....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
| Ricardo Wurmus |
