| Age | Commit message (Expand) | Author |
|---|
| 2019-12-15 | gnu: r-gviz: Update to 1.30.0.•••* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-sushi: Update to 1.24.0.•••* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.24.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-gwascat: Update to 2.18.0.•••* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.18.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-hitc: Update to 1.30.0.•••* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.30.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-fithic: Update to 1.12.0.•••* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.12.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-hdf5array: Update to 1.14.1.•••* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.1.
[propagated-inputs]: Add r-matrix.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-rhdf5lib: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.8.0.
[arguments]: Update patches.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-beachmat: Update to 2.2.1.•••* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.2.1.
[propagated-inputs]: Add r-matrix.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-singlecellexperiment: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.8.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-scater: Update to 1.14.5.•••* gnu/packages/bioinformatics.scm (r-scater): Update to 1.14.5.
[propagated-inputs]: Remove r-dplyr.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-scran: Update to 1.14.5.•••* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.5.
[propagated-inputs]: Remove r-dynamictreecut.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-delayedmatrixstats: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.8.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-mzid: Update to 1.24.0.•••* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.24.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-vsn: Update to 3.54.0.•••* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.54.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-annotationfilter: Update to 1.10.0.•••* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.10.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-chipseq: Update to 1.36.0.•••* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.36.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-copywriter: Update to 2.18.0.•••* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.18.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-affy: Update to 1.64.0.•••* gnu/packages/bioinformatics.scm (r-affy): Update to 1.64.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-affyio: Update to 1.56.0.•••* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.56.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-methylkit: Update to 1.12.0.•••* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.12.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-sva: Update to 3.34.0.•••* gnu/packages/bioinformatics.scm (r-sva): Update to 3.34.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-protgenerics: Update to 1.18.0.•••* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.18.0.
| Ricardo Wurmus |
| 2019-12-15 | gnu: r-mzr: Update to 2.20.0.•••* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.20.0.
| Ricardo Wurmus |
| 2019-12-10 | gnu: Add r-qtl2.•••* gnu/packages/bioinformatics.scm (r-qtl2): New variable.
| Efraim Flashner |
| 2019-12-05 | gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stum...•••* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
javascript module instead of lisp.
| Pierre Neidhardt |
| 2019-12-05 | Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascrip...•••This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which
still breaks ‘guix pull’.
| Tobias Geerinckx-Rice |
| 2019-12-05 | gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and st...•••* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
javascript module instead of lisp.
| Pierre Neidhardt |
| 2019-12-04 | Merge branch 'staging' | Marius Bakke |
| 2019-12-02 | gnu: python-scipy: Move to (gnu packages python-science).•••* gnu/packages/python-xyz.scm (python-scipy, python2-scipy): Move these from
here...
* gnu/packages/python-science.scm (python-scipy, python2-scipy): ...to here.
* gnu/packages/bioinformatics.scm, gnu/packages/machine-learning.scm,
gnu/packages/statistics.scm: Adjust module imports.
| Ricardo Wurmus |
| 2019-11-28 | Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stu...•••This reverts commit abf43a67d5929bf279edce3e790ef1348dda32a5 as it broke "guix pull".
| Ricardo Wurmus |
| 2019-11-28 | gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.•••* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
| Pierre Neidhardt |
| 2019-11-28 | Merge branch 'master' into staging | Marius Bakke |
| 2019-11-25 | gnu: libdivsufsort: Move to datastructures.scm.•••* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ...
* gnu/packages/datastructures.scm: ... here.
| Efraim Flashner |
| 2019-11-25 | gnu: bioperl-minimal: Don't use unstable tarball.•••* gnu/packages/bioinformatics.scm (bioperl-minimal)[source]: Download
using git-fetch.
| Efraim Flashner |
| 2019-11-21 | Merge branch 'master' into staging | Marius Bakke |
| 2019-11-20 | gnu: ngless: Update to 1.0.1.•••* gnu/packages/bioinformatics.scm (ngless): Update to 1.0.1.
[arguments]: Add a 'create-Versions.hs' phase that patches the Makefile
and invokes 'make' to generate a required file.
[inputs]: Remove 'ghc-chart', 'ghc-chart-cairo', and
'ghc-conduit-combinators'; add 'ghc-diagrams-core', 'ghc-diagrams-lib',
'ghc-diagrams-svg', and 'ghc-tar-conduit'.
| Timothy Sample |
| 2019-11-15 | Merge branch 'master' into staging | Marius Bakke |
| 2019-11-14 | gnu: r-gprofiler: Update to 0.7.0.•••* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.7.0.
| Ricardo Wurmus |
| 2019-11-10 | gnu: Add 'file-name' where appropriate.•••* gnu/packages/admin.scm (detox, neofetch),
gnu/packages/algebra.scm (python-fpylll),
gnu/packages/bioinformatics.scm (tbsp, genrich),
gnu/packages/crypto.scm (hpenc),
gnu/packages/digest.scm (xxhash),
gnu/packages/emacs-xyz.scm (emacs-tiny, emacs-ergoemacs-mode,
emacs-make-it-so, emacs-poet-theme, emacs-deft, emacs-scribble-mode,
emacs-helm-mu, emacs-unidecode, emacs-diff-hl, emacs-helm-exwm,
emacs-gif-screencast, emacs-exec-path-from-shell),
gnu/packages/engineering.scm (gpx),
gnu/packages/freedesktop.scm (waylandpp),
gnu/packages/golang.scm (go-github-com-sirupsen-logrus,
go-github-com-shirou-gopsutil),
gnu/packages/guile-xyz.scm (guile-studio, guile-picture-language,
jupyter-guile-kernel),
gnu/packages/image-viewers.scm (qview),
gnu/packages/java-maths.scm (java-jblas),
gnu/packages/llvm.scm (libclc),
gnu/packages/logging.scm (spdlog),
gnu/packages/ocaml.scm (ocaml-cstruct, ocaml-zarith),
gnu/packages/terminals.scm (libtsm),
gnu/packages/tigervnc.scm (tigervnc-client),
gnu/packages/xdisorg.scm (xcalib, xbanish) [source]: Add file-name.
| Efraim Flashner |
| 2019-10-21 | Merge branch 'master' into staging | Marius Bakke |
| 2019-10-20 | gnu: Remove more GCC < 7 workarounds.•••* gnu/packages/abiword.scm (abiword)[arguments]: Do not pass "-std=c++11" to
the GCC command line.
* gnu/packages/aidc.scm (zbar)[arguments]: Likewise.
* gnu/packages/android.scm (android-libbase, android-libcutils,
android-libziparchive, fastboot)[arguments]: Likewise.
* gnu/packages/audio.scm (azr3, guitarix, suil)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[arguments]: Likewise.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Likewise.
* gnu/packages/code.scm (rtags)[arguments]: Likewise.
* gnu/packages/coq.scm (coq-gappa)[arguments]: Likewise.
* gnu/packages/emulators.scm (dolphin-emu)[arguments]: Likewise.
* gnu/packages/engineering.scm (xyce-serial, xyce-parallel)[arguments]: Likewise.
* gnu/packages/gnupg.scm (pinentry-qt)[arguments]: Likewise.
* gnu/packages/gobby.scm (libnet6, obby)[arguments]: Likewise.
* gnu/packages/graph.scm (python-faiss)[arguments]: Likewise.
* gnu/packages/graphics.scm (povray)[arguments]: Likewise.
* gnu/packages/image-processing.scm (opencv, itk-snap)[arguments]: Likewise.
* gnu/packages/image.scm (freeimage)[arguments]: Likewise.
* gnu/packages/kodi.scm (crossguid)[arguments]: Likewise.
* gnu/packages/music.scm (amsynth, qmidiarp, qmidiroute, seq24)[arguments]: Likewise.
* gnu/packages/pdf.scm (python-poppler-qt5)[arguments]: Likewise.
* gnu/packages/sagemath.scm (lcalc)[arguments]: Likewise.
* gnu/packages/video.scm (vlc, mlt, v4l-utils)[arguments]: Likewise.
| Marius Bakke |
| 2019-10-18 | gnu: r-rhdf5lib: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.3.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-hdf5array: Update to 1.12.3.•••* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.3.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-gwascat: Update to 2.16.1.•••* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.1.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-ldblock: Update to 1.14.3.•••* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.3.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-ensembldb: Update to 2.8.1.•••* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.1.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-keggrest: Update to 1.24.1.•••* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.1.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-rhdf5: Update to 2.28.1.•••* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.1.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-rhtslib: Update to 1.16.3.•••* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.3.
| Ricardo Wurmus |
| 2019-10-18 | gnu: r-rsamtools: Update to 2.0.3.•••* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.3.
| Ricardo Wurmus |
