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2020-01-22gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'....* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to LIBJPEG-TURBO. * gnu/packages/admin.scm (testdisk)[inputs]: Likewise. * gnu/packages/algebra.scm (giac)[inputs]: Likewise. * gnu/packages/animation.scm (synfig)[inputs]: Likewise. * gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise. * gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise. * gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise. * gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise. * gnu/packages/display-managers.scm (slim)[inputs]: Likewise. * gnu/packages/ebook.scm (fbreader)[inputs]: Likewise. * gnu/packages/emacs.scm (emacs)[inputs]: Likewise. * gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise. * gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise. * gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise. * gnu/packages/freedesktop.scm (weston)[inputs]: Likewise. * gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame, eureka, ioquake3)[inputs]: Likewise. * gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest, fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise. * gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise. * gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise. (ghostscript)[inputs, native-inputs]: Likewise. * gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise. * gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise. * gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise. * gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise. * gnu/packages/graphics.scm (blender, blender-2.79, openimageio, openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise. * gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise. * gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise. * gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise. * gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl, insight-toolkit)[inputs]: Likewise. * gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise. * gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage, vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise. * gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise. * gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11, openjdk12)[inputs]: Likewise. * gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise. * gnu/packages/kodi.scm (kodi)[inputs]: Likewise. * gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise. * gnu/packages/mate.scm (atril, eom)[inputs]: Likewise. * gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise. * gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise. * gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise. * gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin, rawtherapee)[inputs]: Likewise. * gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise. * gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise. * gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise. * gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise. * gnu/packages/scheme.scm (racket)[inputs]: Likewise. * gnu/packages/scribus.scm (scribus)[inputs]: Likewise. * gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise. (guile-sdl)[native-inputs]: Likewise. * gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise. * gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise. * gnu/packages/upnp.scm (readymedia)[inputs]: Likewise. * gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise. * gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise. * gnu/packages/web.scm (netsurf)[inputs]: Likewise. * gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise. * gnu/packages/wine.scm (wine)[inputs]: Likewise. * gnu/packages/wv.scm (wv)[inputs]: Likewise. * gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise. * gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise. * gnu/packages/xfce.scm (tumbler)[inputs]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise. * gnu/packages/xorg.scm (xpra)[inputs]: Likewise. Marius Bakke
2020-01-20gnu: r-dummies: Use HTTPS home page....* gnu/packages/cran.scm (r-dummies)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-19gnu: Use HTTPS for all r-lib.org subdomains....* gnu/packages/cran.scm (r-ps, r-fs)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: r-extremes: Use HTTPS home page....* gnu/packages/cran.scm (r-extremes)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: r-distillery: Use HTTPS home page....* gnu/packages/cran.scm (r-distillery)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-16gnu: r-poibin: Update to 1.5....* gnu/packages/cran.scm (r-poibin): Update to 1.5. Ricardo Wurmus
2020-01-16gnu: r-gdina: Update to 2.7.8....* gnu/packages/cran.scm (r-gdina): Update to 2.7.8. Ricardo Wurmus
2020-01-16gnu: r-desolve: Update to 1.27.1....* gnu/packages/cran.scm (r-desolve): Update to 1.27.1. Ricardo Wurmus
2020-01-16gnu: r-parameters: Update to 0.4.0....* gnu/packages/cran.scm (r-parameters): Update to 0.4.0. Ricardo Wurmus
2020-01-16gnu: r-umap: Update to 0.2.4.1....* gnu/packages/cran.scm (r-umap): Update to 0.2.4.1. Ricardo Wurmus
2020-01-16gnu: r-batchtools: Update to 0.9.12....* gnu/packages/cran.scm (r-batchtools): Update to 0.9.12. Ricardo Wurmus
2020-01-16gnu: r-rttf2pt1: Update to 1.3.8....* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.8. Ricardo Wurmus
2020-01-16gnu: r-bookdown: Update to 0.17....* gnu/packages/cran.scm (r-bookdown): Update to 0.17. Ricardo Wurmus
2020-01-16gnu: r-shinyjs: Update to 1.1....* gnu/packages/cran.scm (r-shinyjs): Update to 1.1. Ricardo Wurmus
2020-01-16gnu: r-future-apply: Update to 1.4.0....* gnu/packages/cran.scm (r-future-apply): Update to 1.4.0. Ricardo Wurmus
2020-01-16gnu: r-tmb: Update to 1.7.16....* gnu/packages/cran.scm (r-tmb): Update to 1.7.16. Ricardo Wurmus
2020-01-16gnu: r-multcomp: Update to 1.4-12....* gnu/packages/cran.scm (r-multcomp): Update to 1.4-12. Ricardo Wurmus
2020-01-16gnu: r-proc: Update to 1.16.1....* gnu/packages/cran.scm (r-proc): Update to 1.16.1. Ricardo Wurmus
2020-01-16gnu: r-sjmisc: Update to 2.8.3....* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.3. Ricardo Wurmus
2020-01-16gnu: r-insight: Update to 0.8.0....* gnu/packages/cran.scm (r-insight): Update to 0.8.0. Ricardo Wurmus
2020-01-16gnu: r-hdf5r: Update to 1.3.1....* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.1. Ricardo Wurmus
2020-01-16gnu: r-fansi: Update to 0.4.1....* gnu/packages/cran.scm (r-fansi): Update to 0.4.1. Ricardo Wurmus
2020-01-16gnu: r-bibtex: Update to 0.4.2.2....* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.2. Ricardo Wurmus
2020-01-16gnu: r-trend: Update to 1.1.2....* gnu/packages/cran.scm (r-trend): Update to 1.1.2. Ricardo Wurmus
2020-01-16gnu: r-tinytex: Update to 0.19....* gnu/packages/cran.scm (r-tinytex): Update to 0.19. Ricardo Wurmus
2020-01-16gnu: r-xfun: Update to 0.12....* gnu/packages/cran.scm (r-xfun): Update to 0.12. Ricardo Wurmus
2020-01-16gnu: r-cli: Update to 2.0.1....* gnu/packages/cran.scm (r-cli): Update to 2.0.1. Ricardo Wurmus
2020-01-16gnu: r-ggridges: Update to 0.5.2....* gnu/packages/cran.scm (r-ggridges): Update to 0.5.2. Ricardo Wurmus
2020-01-16gnu: r-vcd: Update to 1.4-5....* gnu/packages/cran.scm (r-vcd): Update to 1.4-5. Ricardo Wurmus
2020-01-16gnu: r-recipes: Update to 0.1.9....* gnu/packages/cran.scm (r-recipes): Update to 0.1.9. Ricardo Wurmus
2020-01-16gnu: r-psych: Update to 1.9.12.31....* gnu/packages/cran.scm (r-psych): Update to 1.9.12.31. [propagated-inputs]: Remove r-foreign. Ricardo Wurmus
2020-01-16gnu: r-ddalpha: Update to 1.3.11....* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.11. Ricardo Wurmus
2020-01-16gnu: r-squarem: Update to 2020.1....* gnu/packages/cran.scm (r-squarem): Update to 2020.1. Ricardo Wurmus
2020-01-16gnu: r-suppdists: Update to 1.1-9.5....* gnu/packages/cran.scm (r-suppdists): Update to 1.1-9.5. Ricardo Wurmus
2020-01-16gnu: r-bdsmatrix: Update to 1.3-4....* gnu/packages/cran.scm (r-bdsmatrix): Update to 1.3-4. Ricardo Wurmus
2020-01-16gnu: r-prettyunits: Update to 1.1.0....* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.0. [propagated-inputs]: Remove r-assertthat and r-magrittr. Ricardo Wurmus
2020-01-16gnu: r-getoptlong: Update to 0.1.8....* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.8. Ricardo Wurmus
2020-01-16gnu: r-rgooglemaps: Update to 1.4.5.1....* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.1. Ricardo Wurmus
2020-01-16gnu: r-caret: Update to 6.0-85....* gnu/packages/cran.scm (r-caret): Update to 6.0-85. [propagated-inputs]: Add r-proc. Ricardo Wurmus
2020-01-16gnu: r-caret: Do not abbreviate "misc"....* gnu/packages/cran.scm (r-caret)[description]: Replace "misc" with "miscellaneous". Ricardo Wurmus
2020-01-16gnu: r-caret: Move to (gnu packages cran)....* gnu/packages/statistics.scm (r-caret): Move variable from here... * gnu/packages/cran.scm (r-caret): ...to here. Ricardo Wurmus
2020-01-03gnu: r-irkernel: Fix R kernel loading...* gnu/packages/cran.scm (r-irkernel): Absolute path to R binary [propagated-inputs]: Generate proper search paths by adding r-minimal Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-01-03gnu: uglify-js: Move back next to sbcl-cl-uglify-js definition....This fixes the bug which prevented uglify-js from being defined properly, and cascaded back to all Common Lisp packages. * gnu/packages/bioinformatics.scm: Replace javascript module with lisp-xyz. * gnu/packages/cran.scm: Use lisp-xyz module. * gnu/packages/javascript.scm (uglify-js): Move from here... * gnu/packages/lisp-xyz.scm: ... To here. * gnu/packages/web.scm: Replace javascript module with lisp-xyz. * guix/build-system/minify.scm: Find uglify-js in the lisp-xyz module. Pierre Neidhardt
2020-01-01gnu: Add r-adaptalint....* gnu/packages/cran.scm (r-adaptalint): New variable. Ricardo Wurmus
2020-01-01gnu: Add r-adapsamp....* gnu/packages/cran.scm (r-adapsamp): New variable. Ricardo Wurmus
2020-01-01gnu: Add r-adapr....* gnu/packages/cran.scm (r-adapr): New variable. Ricardo Wurmus
2020-01-01gnu: Add r-versions....* gnu/packages/cran.scm (r-versions): New variable. Ricardo Wurmus
2020-01-01gnu: Add r-archivist....* gnu/packages/cran.scm (r-archivist): New variable. Ricardo Wurmus
2020-01-01gnu: Add r-flock....* gnu/packages/cran.scm (r-flock): New variable. Ricardo Wurmus
2020-01-01gnu: Add r-adapenetclass....* gnu/packages/cran.scm (r-adapenetclass): New variable. Ricardo Wurmus