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2022-05-31gnu: Remove python2-fastlmm....* gnu/packages/machine-learning.scm (python2-fastlmm): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-scikit-learn....* gnu/packages/machine-learning.scm (python2-scikit-learn): Delete variable. (python-scikit-learn)[properties]: Remove the python2-variant property. Maxim Cournoyer
2022-05-12gnu: python-umap-learn: Update to 0.5.3....* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3. [source]: Use git. [arguments]: New field. [native-inputs]: Delete python-joblib and python-nose. Add python-pytest. [propagated-inputs]: Add python-pynndescent and python-tqdm. [synopsis]: Fix indentation. [description]: Fix typo and re-indent. Maxim Cournoyer
2022-05-12gnu: python-pynndescent: Update to 0.5.6....* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6. [phases]{check}: Skip the test_weighted_minkowski test. [native-inputs, propagated-inputs]: Re-indent. Maxim Cournoyer
2022-05-12gnu: python-scikit-learn: Parallelize build and test suite....* gnu/packages/machine-learning.scm (python-scikit-learn) [phases]{configure}: New phase. {build-ext}: Add '-j' option. {check}: Add '-n' option. [native-inputs]: Add python-pytest-xdist. Maxim Cournoyer
2022-04-15gnu: python-hmmlearn: Remove cythonized file....* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add snippet to remove cythonized file. Efraim Flashner
2022-03-15gnu: liblantern: Update to 0.7.2....* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.2. Ricardo Wurmus
2022-03-15gnu: liblantern: Update to 0.7.0....* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0. Ricardo Wurmus
2022-03-15gnu: python-pytorch-for-r-torch: Reuse python-pytorch....* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use definition on python-pytorch, thereby updating to 1.10.2. Ricardo Wurmus
2022-02-11gnu: Add liblantern....* gnu/packages/machine-learning.scm (liblantern): New variable. Ricardo Wurmus
2022-02-11gnu: Add python-pytorch-for-r-torch....* gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): New variable. Ricardo Wurmus
2022-02-11gnu: python-pytorch: Update to 1.10.2....* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.2. Ricardo Wurmus
2022-01-24gnu: xgboost: Update to 1.5.2....* gnu/packages/machine-learning.scm (xgboost, python-xgboost): Update to 1.5.2. (python-xgboost)[arguments]: Enable previously failing test. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: Update patch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Vinicius Monego
2022-01-19gnu: python-scikit-learn: Update to 1.0.2....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.2. Marius Bakke
2022-01-17Merge branch 'version-1.4.0'...With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm Maxim Cournoyer
2022-01-10gnu: python-scikit-learn: Remove obsolete phase....* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments] <#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-14gnu: python-opentsne: Update to 0.6.1....* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1. [source]<file-name>: Use git-file-name. [arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to skip a failing test. Vinicius Monego
2022-01-14gnu: python-pynndescent: Update to 0.5.5....* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5. [arguments]<#:phases>: Override 'check phase. [native-inputs]: Remove python-nose. Add python-pytest. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego
2022-01-11gnu: python-scikit-rebate: Update to 0.62....* gnu/packages/machine-learning.scm (python-scikit-rebate): Update to 0.62. [arguments]: Disable tests. [native-inputs]: Remove. Marius Bakke
2021-12-28gnu: Add guile-aiscm-next....* gnu/packages/machine-learning.scm (guile-aiscm-next): New variable. Ricardo Wurmus
2021-12-28gnu: guile-aiscm: Remove opencv and tensorflow....* gnu/packages/machine-learning.scm (guile-aiscm)[inputs]: Remove opencv and tensorflow. Ricardo Wurmus
2021-12-28gnu: guile-aiscm: Remove timestamp from documentation....* gnu/packages/machine-learning.scm (guile-aiscm)[arguments]: Add phase 'build-reproducibly. Ricardo Wurmus
2021-12-28gnu: tensorflow: Install C headers....* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Add build phase 'patch-cmake-file-to-install-c-headers; move setting of LDFLAGS from 'build-pip-package to 'unpack-third-party-sources; move 'build-pip-package after 'install phase. [source]: Add patch. * gnu/packages/patches/tensorflow-c-api-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus
2021-12-27gnu: Add guile-aiscm....* gnu/packages/machine-learning.scm (guile-aiscm): New variable. Ricardo Wurmus
2021-12-15gnu: tensorflow: Fix build with newer numpy....* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Rename 'python3.7-compatibility to 'python3.9-compatibility and patch file to allow building with newer numpy. Ricardo Wurmus
2021-12-14gnu: tensorflow: Do not unpack directory....* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Copy Eigen source code instead of trying to unpack it. Ricardo Wurmus
2021-12-13gnu: Further simplify package inputs....This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.) Ludovic Courtès
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-09gnu: python2-scikit-learn: Disable one more test....* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not inherit; remove obsolete 'make-files-writable phase; disable one more failing test in 'check phase. Ricardo Wurmus
2021-12-09gnu: libsvm: Install header and library....* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase 'build-lib; also install header file and shared library in the 'install phase. Ricardo Wurmus
2021-12-08gnu: ocaml-mcl: Add -fcommon to compiler flags....* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon. Ricardo Wurmus
2021-12-07gnu: mcl: Add -fcommon to compiler flags....* gnu/packages/machine-learning.scm (mcl)[arguments]: Set CFLAGS. Ricardo Wurmus
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-02gnu: randomjungle: Fix compatibility errors....* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase 'fix-compatibility-errors to patch type errors. Ricardo Wurmus
2021-11-20gnu: python-scikit-learn: Update to 1.0.1....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.1. [arguments]: Disable one failing network test. Ricardo Wurmus
2021-11-20gnu: python-scikit-learn: Run tests conditionally....* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Respect TESTS? in 'check phase. Ricardo Wurmus
2021-11-20gnu: python-pytorch: Warn of missing test inputs....* gnu/packages/machine-learning.scm (python-pytorch): Add comment. Ricardo Wurmus
2021-11-20gnu: python-pytorch: Add missing input....* gnu/packages/machine-learning.scm (python-pytorch)[propagated-inputs]: Add python-click. Ricardo Wurmus
2021-11-20gnu: python-pytorch: Use ADD-INSTALLED-PYTHONPATH....* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Do not set PYTHONPATH; use add-installed-pythonpath instead. Ricardo Wurmus
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-15gnu: python-pytorch: Update to 1.10.0....* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.0. * gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust. Ludovic Courtès
2021-11-11gnu: python-keras: Skip a flaky test....* gnu/packages/machine-learning.scm (python-keras) [phases]{check}: Also skip the test_stateful_metrics test. Maxim Cournoyer
2021-11-11gnu: python-keras: Enable parallel tests....* (python-keras)[phases]: Delete trailing #t. {check}: Honor TESTS?. Run the tests in parallel. Disable PEP8 lint. Maxim Cournoyer
2021-11-11gnu: tensorflow: Enable parallel build (at least partially)....There are still many parts of the build that happen sequentially, but at least this hastens the long build somewhat. * gnu/packages/machine-learning.scm (tensorflow)[phases]: Remove trailing #t. {build-pip-package}: Honor the PARALLEL-BUILD? argument. Maxim Cournoyer
2021-11-11gnu: abseil-cpp: Update to 20210324.2....But keep the older variant for Tensorflow. * gnu/packages/cpp.scm (abseil-cpp-20200923.3): Renamed older variant. (abseil-cpp): New variable. * gnu/packages/machine-learning.scm (tensorflow-lite) [inputs]: Adjust to use the older abseil-cpp-20200923.3. * gnu/packages/rpc.scm (grpc-1.16.1)[native-inputs]: Likewise. Co-authored-by: Greg Hogan <code@greghogan.com> Maxim Cournoyer
2021-10-12Merge remote-tracking branch 'origin/master' into core-updates-frozen.Mathieu Othacehe
2021-09-25gnu: Add python-xgboost....* gnu/packages/machine-learning.scm (python-xgboost): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego
2021-09-25gnu: Add xgboost....* gnu/packages/machine-learning.scm (xgboost): New variable. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego
2021-09-25gnu: Add dmlc-core....* gnu/packages/machine-learning.scm (dmlc-core): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego
2021-09-24gnu: python-pytorch: Unbundle NNPACK....* gnu/packages/machine-learning.scm (python-pytorch)[source]: Delete "third_party/NNPACK". [inputs]: Add NNPACK. [propagated-inputs]: Remove PYTHON-PEACHPY. * gnu/packages/patches/python-pytorch-system-libraries.patch: Remove hunk modifying NNPACK; add hunk to allow the use of our own NNPACK. Ludovic Courtès
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