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2021-07-28gnu: openlibm: Fix cross-compiling....* gnu/packages/maths.scm (openlibm)[arguments]: Add configure-flag to use cc-for-target. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Baptiste Volatier
2021-07-28gnu: openlibm: Update to 0.7.4....* gnu/packages/maths.scm (openlibm): Update to 0.7.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Baptiste Volatier
2021-07-26gnu: gsegrafix: Update to 1.0.7.2....This keeps this ancient package on life support for now. * gnu/packages/maths.scm (gsegrafix): Update to 1.0.7.2. [source]: Download from gsegrafix-experimental's Savannah. [arguments]: Drop obsolete LDFLAGS. Disable static library build. [inputs]: Remove libgnomecanvas, libbonoboui, libgnomeui, libgnomeprintui, and popt. Add glib and gtk+. Tobias Geerinckx-Rice
2021-07-20gnu: dealii: Update to 9.3.1 and clean up....The cleanup notably: * Builds and installs the documentation into a separate doc output (in the process moving around some files erroneously installed into the root directory); and * Removes unnecessary inputs and moves some inputs into propagated-inputs (the candidates of which were determined with a search for "include.*LIBNAME" in include/deal.II). * gnu/packages/maths.scm (dealii): Reword comments. [version]: Update to 9.3.1. [outputs]: New field including doc output. [native-inputs]: New field. [inputs]: Sort them. Remove p4est (deal.II interfaces with it only when MPI is enabled). Move boost, suitesparse and tbb to... [propagated-inputs]: ...here. New field including hdf5, which is actually supported in deal.II without MPI. [arguments]<#:tests?>: New argument. The tests were not being run before anyway. <#:configure-flags>[-DDEAL_II_COMPONENT_DOCUMENTATION]: New flag. [-DDEAL_II_DOCREADME_RELDIR]: New flag. Prevents the LICENSE.md, README.md, detailed.log and summary.log files from being installed in the root directory (though note that the logs are removed in the new remove-build-logs phase). [-DDEAL_II_DOCHTML_RELDIR]: New flag. [-DDEAL_II_COMPILE_EXAMPLES]: New flag. [-DDEAL_II_EXAMPLES_RELDIR]: New flag. Prevents the examples directory from being installed in the root directory. [-DCMAKE_POSITION_INDEPENDENT_CODE]: Remove flag. The issue has been resolved. <#:phases>{remove-build-logs}: New phase. [home-page]: Add trailing slash. (dealii-openmpi): Use package/inherit. [inputs]: Sort them. Remove mumps-metis-openmpi (deal.II no longer interfaces with MUMPS). Move hdf5-parallel-openmpi, openmpi, p4est-openmpi, petsc-openmpi and slepc-openmpi to... [propagated-inputs]: ...here. New field. [arguments]<#:configure-flags>: Rename cf variable to flags. <#:phases>{mpi-setup}: Remove phase which is unused because the tests are disabled. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2021-07-19gnu: Add nomad-optimizer....* gnu/packages/maths.scm (nomad-optimizer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2021-07-16gnu: Add blitz....* gnu/packages/maths.scm (blitz): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Ivan Gankevich
2021-07-13gnu: gmsh: Sort inputs alphabetically....* gnu/packages/maths.scm (gmsh)[propagated-inputs]: Sort alphabetically. Efraim Flashner
2021-07-13gnu: gmsh: Simply downloading source logic....* gnu/packages/maths.scm (gmsh)[source]: Use string-replace-substring. Efraim Flashner
2021-07-13gnu: gmsh: Update to 4.8.4....* gnu/packages/maths.scm (gmsh): Update to 4.8.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Paul A. Patience
2021-07-12gnu: gmsh: Install Python API in standard directory....* gnu/packages/maths.scm (gmsh)[imported-modules]: New argument. [modules]: New argument. [phases]: New argument. [inputs]: Add python. Paul Garlick
2021-07-08gnu: mcrl2: Update to 202106.0....* gnu/packages/maths.scm (mcrl2): Update to 202106.0. Jan (janneke) Nieuwenhuizen
2021-07-07gnu: openblas: Fix building on powerpc64le-linux....* gnu/packages/maths.scm (openblas)[arguments]: Add make-flags to enable building for powerpc64le-linux. Efraim Flashner
2021-07-07gnu: openblas: Fix building on armhf-linux....* gnu/packages/maths.scm (openblas)[arguments]: Add make-flag to set target architecture. Efraim Flashner
2021-07-02gnu: atlas: Extend build time-out....* gnu/packages/maths.scm (atlas)[properties]: Quadruple the timeout. Tobias Geerinckx-Rice
2021-07-02gnu: gnuplot: Update to 5.4.2....* gnu/packages/maths.scm (gnuplot): Update to 5.4.2. Tobias Geerinckx-Rice
2021-06-29gnu: scotch: Update to 6.1.1....* gnu/packages/maths.scm (scotch): Update to 6.1.1. [native-inputs]: Add GFORTRAN. [arguments]: Set 'FC' in 'Makefile.in'. (scotch32)[arguments]: Likewise. (scotch-shared)[arguments]: Likewise. Ludovic Courtès
2021-06-29gnu: scotch: Add 'release-monitoring-url' property....* gnu/packages/maths.scm (scotch)[properties]: New field. Ludovic Courtès
2021-06-25gnu: suitesparse: Update to 5.10.1....* gnu/packages/maths.scm (suitesparse): Update to 5.10.1. Ludovic Courtès
2021-06-25gnu: suitesparse: Link against OpenBLAS rather than LAPACK....* gnu/packages/maths.scm (suitesparse)[inputs]: Replace LAPACK with OPENBLAS. [arguments]: Add "BLAS"and "LAPACK" to #:make-flags. Ludovic Courtès
2021-06-24gnu: maxima: Update to 5.45.1....* gnu/packages/maths.scm (maxima): Update to 5.45.1. [home-page]: Follow redirect. Kei Kebreau
2021-06-22gnu: petsc: Link against OpenBLAS rather than LAPACK....OpenBLAS performs better than LAPACK, the reference implementation. This is also consistent with the choice of BLAS/LAPACK implementations made in most other packages. * gnu/packages/maths.scm (petsc)[inputs]: Replace LAPACK by OPENBLAS. [arguments]: Pass "--with-openblas=1". Ludovic Courtès
2021-06-20gnu: why3: Update to 1.3.3....* gnu/packages/maths.scm (why3): Update to 1.3.3. [arguments]: Adjust for newer ocaml-num. Julien Lepiller
2021-06-14gnu: wxmaxima: Update to 21.05.2....* gnu/packages/maths.scm (wxmaxima): Update to 21.05.2. Kei Kebreau
2021-06-14gnu: maxima: Update to 5.45.0....* gnu/packages/maths.scm (maxima): Update to 5.45.0. Kei Kebreau
2021-06-14gnu: Rename qtbase to qtbase-5....This change was automated via the following command: $ git ls-files | xargs sed -i 's/,qtbase)/,qtbase-5)/g' $ git ls-files | xargs sed -i 's/inherit qtbase)/inherit qtbase-5)/g' $ git ls-files | xargs sed -i 's/package-version qtbase)/package-version qtbase-5)/g' $ git checkout etc # to clear some spurious changes This is done so the qtbase package can be upgraded to version 6 in the following commit. Maxim Cournoyer
2021-06-12gnu: qalculate-gtk: Update to 3.19.0....* gnu/packages/maths.scm (qalculate-gtk): Update to 3.19.0. [phases]: Remove 'add-pot-file. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Jack Hill
2021-06-12gnu: libqalculate: Update to 3.19.0....* gnu/packages/maths (libqalculate): Update to 3.19.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Jack Hill
2021-06-02gnu: Add frama-c....* gnu/packages/maths.scm (frama-c): New variable. Julien Lepiller
2021-06-02gnu: Add why3....* gnu/packages/maths.scm (why3): New variable. Julien Lepiller
2021-05-28gnu: ipopt: Update to 3.13.4...* gnu/packages/maths.scm (ipopt): Update to 3.13.4, update URL. [license]: Change to LICENSE:EPL2.0. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown
2021-05-28gnu: Add cbc....* gnu/packages/maths.scm (cbc): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown
2021-05-25gnu: qhull: Build position independent....* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to build code position independent. Efraim Flashner
2021-05-25gnu: qhull: Link binaries to shared library....This drops the package size by nearly 60%. * gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to link binaries to shared library. Efraim Flashner
2021-05-24gnu: HYPRE: Update source and home page URLs....* gnu/packages/maths.scm (hypre)[source]: Change to new repository home. [home-page]: Follow redirect. Marius Bakke
2021-05-23gnu: Fix erroneous uses of 'package/inherit'....These packages use a different source/version from the inherited package, and thus should not inherit replacements. * gnu/packages/check.scm (googletest-1.8, python-pytest-runner-2): Use record inheritance instead of PACKAGE/INHERIT. * gnu/packages/crates-io.scm (rust-bindgen-0.49, rust-bytes-0.4, rust-colored-1.9.1, rust-difference-1, rust-docopt-0.8, rust-html5ever-0.23, rust-http-0.1, rust-http-body-0.1, rust-loom-0.2, rust-loom-0.1, rust-pulldown-cmark-0.0.8, rust-ring-0.13, rust-rustls-0.12, rust-sct-0.3, rust-term-0.2, rust-untrusted-0.6, rust-webpki-0.18, rust-webpki-roots-0.17, rust-webpki-roots-0.14): Likewise. * gnu/packages/emacs.scm (emacs-next, emacs-next-pgtk, guile-emacs): Likewise. * gnu/packages/guile.scm (guile-2.2.4): Likewise. * gnu/packages/maths.scm (hdf5-1.10, hdf5-1.12): Likewise. * gnu/packages/protobuf.scm (protobuf-3.6, protobuf-3.5, python-protobuf-3.6): Likewise. * gnu/packages/python-web.scm (python2-html2text): Likewise. * gnu/packages/python-xyz.scm (python-pygments/fixed, python2-numpy, python2-urwid, python2-markdown, python2-fonttools): Likewise. * gnu/packages/racket.scm (racket): Likewise. * gnu/packages/sequoia.scm (sequoia4pEp): Likewise. Marius Bakke
2021-05-21gnu: Add numdiff....* gnu/packages/maths.scm (numdiff): New variable. Paul A. Patience
2021-05-18gnu: hdf5: Fix invalid regex range....* gnu/packages/maths.scm (hdf5-1.8)[arguments]: Use [a-zA-Z] instead of [a-Z] as range in regular expression. Marius Bakke
2021-05-18gnu: qhull: Update to 2020.2....* gnu/packages/maths.scm (qhull): Update to 2020.2. Marius Bakke
2021-05-15gnu: arpack-ng@3.3: Don't use unstable source tarball....* gnu/packages/maths.scm (arpack-ng-3.3.0)[name, home-page]: Remove. [source]: Switch to GIT-FETCH. Inline uses of NAME and HOME-PAGE. Marius Bakke
2021-05-15gnu: arpack-ng: Update to 3.8.0....* gnu/packages/maths.scm (arpack-ng): Update to 3.8.0. [native-inputs]: Add PKG-CONFIG. [inputs]: Add EIGEN. Marius Bakke
2021-05-06gnu: Add cglm....* gnu/packages/maths.scm (cglm): New public variable. Tobias Geerinckx-Rice
2021-05-05gnu: Add libcerf....* gnu/packages/maths.scm (libcerf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego
2021-05-03gnu: octave, octave-cli: Explain difference....* gnu/packages/maths.scm (octave-cli, octave): Extended synopsis. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2021-04-29gnu: xaos: Update to 4.2.1....* gnu/packages/maths.scm (xaos): Update to 4.2.1. [arguments]: Patch call to "lrelease" in XaoS.pro. Kei Kebreau
2021-04-21gnu: wxmaxima: Update to 21.04.0....* gnu/packages/maths.scm (wxmaxima): Update to 21.04.0. Kei Kebreau
2021-04-12gnu: blis: Add deprecated aliases....Add deprecated aliases for packages removed in the parent commit. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New variables. Ludovic Courtès
2021-04-12gnu: blis: Update to 0.8.1....* gnu/packages/maths.scm (make-blis): Remove internal function. Inline into ... (bliss): ... this variable. Update to 0.8.1. [native-inputs]: Add "python" and "perl". [arguments]: Adjust 'configure' phase to take advantage of new support for "configuration families" with runtime hardware detection. Select configuration automatically based on target systems, and allow "--blis-config=" in #:configure-flags to override the default. When building for x86_64, include all supported microarchetecture specializations. Add "--enable-verbose-make" configure flag for better build logs. Stop ignoring other flags from #:configure-flags. Remove explicit #:substitutable? argument: the package is now always substitutable. Add (srfi srfi-1) to #:modules. (blis/x86_64): Remove internal macro. (blis-sandybridge): Remove package: included in 'blis'. (blis-haswell): Remove package: included in 'blis'. (blis-knl): Remove package: included in 'blis'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-04-09gnu: python-sip: Update to 5.5.0. Add python-sip-4...* gnu/packages/qt.scm (python-sip): Update to 5.5.0. (python-sip-4): New variable. Rename the old python-sip to python-sip-4. (python2-sip): Inherit from python-sip-4. * gnu/packages/maths.scm (veusz)[native-inputs]: Use python-sip-4. * gnu/packages/pdf.scm (python-poppler-qt5): Use python-sip-4. * gnu/packages/geo.scm (qgis)[arguments]: Fix build for python-sip@5. Brendan Tildesley
2021-04-06gnu: Add scotch and pt-scotch with shared libraries...* gnu/packages/maths.scm (scotch-shared, pt-scotch-shared): New variables. Signed-off-by: Leo Famulari <leo@famulari.name> Franck Pérignon
2021-04-05gnu: suitesparse: Update to 5.9.0....* gnu/packages/maths.scm (suitesparse): Update to 5.9.0. [arguments]: Use cc-for-target instead of hard-coding gcc. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Felix Gruber
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