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2021-12-22gnu: frama-c: Update to 24.0....* gnu/packages/maths.scm (frama-c): Update to 24.0. Julien Lepiller
2021-12-19gnu: cglm: Use meson-build-system....The CMake-based builds fail to correctly encode the version, leading to build failures in dependencies. See <https://bugs.gnu.org/52663>. * gnu/packages/maths.scm (cglm)[build-system]: Change to meson-build-system. [arguments]: Adjust #:configure-flags accordingly. Liliana Marie Prikler
2021-12-19gnu: cglm: Update to 0.8.4....* gnu/packages/maths.scm (cglm): Update to 0.8.4. Liliana Marie Prikler
2021-12-13gnu: Further simplify package inputs....This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.) Ludovic Courtès
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-12gnu: sundials: Add 'release-monitoring-url' property....* gnu/packages/maths.scm (sundials)[properties]: New field. Ludovic Courtès
2021-12-12gnu: sundials: Build with '-fcommon'....* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS". Ludovic Courtès
2021-12-09gnu: Add gsl-static....* gnu/packages/maths.scm (gsl-static): New variable. Efraim Flashner
2021-12-08gnu: python-slepc4py: Update to 3.16.1....This is a followup 5b4d1e57b6d4931f6ee2a50abf84222fe015d045. * gnu/packages/maths.scm (slepc-openmpi)[inputs]: Move ARPACK-NG-OPENMPI to... [propagated-inputs]: ... here. (python-slepc4py): Update to 3.16.1. Ludovic Courtès
2021-12-08gnu: python-petsc4py: Update to 3.16.1....This is a followup to 07ac13a26a0d7c8319afb42c55fc2116ec44668f. * gnu/packages/maths.scm (python-petsc4py): Update to 3.16.1. Ludovic Courtès
2021-12-08gnu: mumps: Allow compilation with GCC 10....Following the suggestion at <https://community.freefem.org/t/compline-on-macos-10-15-6/543>. * gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add '-fallow-argument-mismatch' to 'OPTF'. Ludovic Courtès
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-05gnu: clapack: Pass -fcommon to compiler....* gnu/packages/maths.scm (clapack)[arguments]: Set CFLAGS. Ricardo Wurmus
2021-12-05gnu: clapack: Remove trailing #T....* gnu/packages/maths.scm (clapack)[arguments]: Remove trailing #T from build phases. Ricardo Wurmus
2021-12-05gnu: Adjust for python-build-system behavior change....Commit cb72f9a773e0931ee3758c851d96007ded034e4c changed the semantics of SITE-PACKAGES, but did not adjust all callers. * gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Adjust for missing trailing slash. * gnu/packages/maths.scm (nomad-optimizer)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchwork)[arguments]: Likewise. Marius Bakke
2021-12-01gnu: petsc-{complex,openmpi,complex-openmpi}: Use gexps....This is a followup to 07ac13a26a0d7c8319afb42c55fc2116ec44668f, which omitted to switch to gexps in packages that inherit from 'petsc'. Reported by Mathieu Othacehe <othacehe@gnu.org>. * gnu/packages/maths.scm (petsc-complex)[arguments]: Use gexps. (petsc-openmpi)[arguments]: Likewise. (petsc-complex-openmpi)[arguments]: Likewise. Ludovic Courtès
2021-12-01gnu: scalapack: Update to 2.1.0....* gnu/packages/maths.scm (scalapack): Update to 2.1.0. [source]: Remove "scalapack-blacs-mpi-deprecations.patch" and add "scalapack-gcc-10-compilation.patch". [arguments]: Add 'skip-faulty-test' phase. * gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: Remove. * gnu/packages/patches/scalapack-gcc-10-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
2021-11-29gnu: slepc: Update to 3.16.1....* gnu/packages/maths.scm (slepc): Update to 3.16.1. [native-inputs]: Use PYTHON instead of PYTHON-2. Add WHICH. [properties]: New field. Ludovic Courtès
2021-11-29gnu: petsc: Update to 3.16.1....* gnu/packages/maths.scm (petsc): Update to 3.16.1. [native-inputs]: Use PYTHON instead of PYTHON-2. Add WHICH. [arguments]: Rewrite using gexps. Pass '--with-openblas-dir'. In 'configure' phase, modify "config/example_template.py". Ludovic Courtès
2021-11-26gnu: ceres-solver: Install library to lib/ instead of lib64/....* gnu/packages/maths.scm (ceres)[arguments]: In 'set-library-directory' phase, modify the top-level 'CMakeLists.txt'. Ludovic Courtès
2021-11-25gnu: aris: Build with '-O2'....* gnu/packages/maths.scm (aris)[arguments]: Pass "-O2 -g". Ludovic Courtès
2021-11-22gnu: opencascade-occt: Use TBB 2020....* gnu/packages/maths.scm (opencascade-occt)[inputs]: Replace tbb with tbb-2020. Ricardo Wurmus
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-16gnu: Add julia-sundials-jull...* gnu/packages/julia-jll.scm (julia-sundials-jll): New variable. * gnu/packages/maths.scm (sundials-julia): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Baptiste Volatier
2021-11-11gnu: openblas: Do not build static library....* gnu/packages/maths.scm (openblas)[make-flags]: Add NO_STATIC=1. Maxim Cournoyer
2021-11-11gnu: openblas: Add support for older x86 processors....Fixes <https://issues.guix.gnu.org/51452>. * gnu/packages/maths.scm (openblas)[make-flags]: Make the x86_64, i686, powerpc64le and aarch64 architectures share the same flags; this causes the DYNAMIC_OLDER=1 to be added for all of them and TARGET=GENERIC to be added for the x86_64 and i686 architectures. Maxim Cournoyer
2021-11-11gnu: openblas: Update to 0.3.18....* gnu/packages/maths.scm (openblas): Update to 0.3.18. Delete trailing #t. Maxim Cournoyer
2021-10-31Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-10-28gnu: Add ocaml-z3....* gnu/packages/maths.scm (ocaml-z3): New variable. Julien Lepiller
2021-10-24gnu: Add clingo....* gnu/packages/maths.scm (clingo): New variable. Liliana Marie Prikler
2021-10-24gnu: Add clasp....* gnu/packages/maths.scm (clasp): New variable. Liliana Marie Prikler
2021-10-24gnu: Add libpotassco....* gnu/packages/maths.scm (libpotassco): New variable. Liliana Marie Prikler
2021-10-23gnu: hdf-java: Look for jars in the right place....* gnu/packages/maths.scm (hdf-java)[arguments]: Look for slf4j .jar files in the right place rather than share/java. Ludovic Courtès
2021-10-23gnu: Use 'search-input-file' some more....This patch replaces occurrences of: (string-append (assoc-ref %build-inputs "…") "/…") by: (search-input-file %build-inputs "/…") * doc/guix.texi (Miscellaneous Services): Use 'search-input-file' in R Shiny example. * gnu/packages/admin.scm (screenfetch): Use 'search-input-file'. (ufetch): Likewise. (hosts): Likewise. * gnu/packages/backup.scm (dirvish): Likewise. * gnu/packages/code.scm (colormake): Likewise. * gnu/packages/compression.scm (makeself-safeextract): Likewise. * gnu/packages/debug.scm (scanmem): Likewise. * gnu/packages/education.scm (snap): Likewise. (omnitux): Likewise. * gnu/packages/emacs-xyz.scm (epipe): Likewise. * gnu/packages/games.scm (openttd-opensfx): Likewise. (openttd-openmsx): Likewise. (openrct2-title-sequences): Likewise. (openrct2-objects): Likewise. (mrrescue): Likewise. (0ad-data): Likewise. (xonotic-data): Likewise. (drascula): Likewise. (make-lure-package): Likewise. (make-queen-package): Likewise. (sky): Likewise. * gnu/packages/gnome.scm (network-manager): Likewise. * gnu/packages/gnuzilla.scm (icedove): Likewise. * gnu/packages/guile-xyz.scm (guile-shapefile): Likewise. * gnu/packages/hurd.scm (netdde): Likewise. * gnu/packages/javascript.scm (js-context-menu): Likewise. (js-commander): Likewise. (js-xmldom-sre): Likewise. * gnu/packages/kde-frameworks.scm (krunner): Likewise. * gnu/packages/kodi.scm (kodi-cli): Likewise. * gnu/packages/libreoffice.scm (hunspell-dict-pl): Likewise. * gnu/packages/linux.scm (e2fsck/static): Likewise. * gnu/packages/markup.scm (markdown): Likewise. * gnu/packages/maths.scm (hdf-java): Likewise. * gnu/packages/multiprecision.scm (libtomcrypt): Likewise. * gnu/packages/networking.scm (batctl): Likewise. * gnu/packages/python-xyz.scm (python-pymediainfo): Likewise. * gnu/packages/shells.scm (fish-foreign-env): Likewise. * gnu/packages/tex.scm (texlive-fonts-iwona): Likewise. * gnu/packages/upnp.scm (miniupnpc): Likewise. * gnu/packages/version-control.scm (git-annex-remote-rclone): Likewise. * gnu/packages/virtualization.scm (qemu): Likewise. * gnu/packages/web.scm (icedtea-web): Likewise. * gnu/packages/wm.scm (stumpish): Likewise. Ludovic Courtès
2021-10-18gnu: hdf5@1.12: Update to 1.12.1....* gnu/packages/maths.scm (hdf5-1.12): Update to 1.12.1. Tobias Geerinckx-Rice
2021-10-12Merge remote-tracking branch 'origin/master' into core-updates-frozen.Mathieu Othacehe
2021-10-08gnu: frama-c: Update to 23.1....* gnu/packages/maths.scm (frama-c): Update to 23.1. Julien Lepiller
2021-10-08gnu: why3: Update to 1.4.0....* gnu/packages/maths.scm (why3): Update to 1.4.0. Julien Lepiller
2021-10-07gnu: mcrl2: Update hash of modified-in-place tarball....Fixes <https://issues.guix.gnu.org/51074>. * gnu/packages/maths.scm (mcrl2)[source]: Update hash. Ludovic Courtès
2021-09-25gnu: Add minizinc....* gnu/packages/maths.scm (minizinc): New variable. Liliana Marie Prikler
2021-09-25gnu: Add gecode....* gnu/packages/maths.scm (gecode): New variable. Liliana Marie Prikler
2021-09-24gnu: fp16: Install Python files in the site directory....* gnu/packages/maths.scm (fp16)[arguments]: New field. Ludovic Courtès
2021-09-17Merge branch 'master' into core-updates-frozen... Conflicts: gnu/packages/bioinformatics.scm gnu/packages/chez.scm gnu/packages/docbook.scm gnu/packages/ebook.scm gnu/packages/gnome.scm gnu/packages/linux.scm gnu/packages/networking.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/tex.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/dune.scm guix/build-system/go.scm guix/build-system/linux-module.scm guix/packages.scm Marius Bakke
2021-09-16gnu: aris: Fix build....* gnu/packages/maths.scm (aris)[arguments]: Pass '-fcommon' to CFLAGS. Guillaume Le Vaillant
2021-09-14gnu: gsl: Comment out more tests that fail on i686-linux....* gnu/packages/maths.scm (gsl)[arguments]: In 'disable-failing-tests' phase, comment out more tests. Ludovic Courtès
2021-09-11gnu: nauty: Update to 2.7r3....* gnu/packages/maths.scm (nauty): Update to 2.7r3. Nicolas Goaziou
2021-09-11gnu: netcdf-parallel-openmpi: Allow compilation with GCC 10....* gnu/packages/maths.scm (netcdf)[source]: Add 'modules' and 'snippet'. Ludovic Courtès
2021-09-07Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-09-06gnu: Use the non-deprecated TeX packages....This commit leaves 'dblatex' and 'texlive-hyperref' as users of deprecated packages, but these have many dependents. * gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Use non-deprecated TeX Live packages. (velvet)[native-inputs]: Likewise. * gnu/packages/chez.scm (chez-scheme)[native-inputs]: Likewise. (chez-web)[native-inputs]: Likewise. * gnu/packages/engineering.scm (fastcap)[native-inputs]: Likewise. * gnu/packages/guile-xyz.scm (emacsy)[native-inputs]: Likewise. * gnu/packages/maths.scm (hypre)[native-inputs]: Likewise. * gnu/packages/music.scm (lilypond)[native-inputs]: Likewise. * gnu/packages/ocaml.scm (ocaml-bibtex2html)[native-inputs]: Likewise. * gnu/packages/plotutils.scm (asymptote)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Likewise. (python-matplotlib-documentation)[native-inputs]: Likewise. (python-ipython-documentation)[native-inputs]: Likewise. (python-nbconvert)[native-inputs]: Likewise. (python-pypandoc)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Likewise. * gnu/packages/tex.scm (texlive-pstool)[propagated-inputs]: Likewise. (teximpatient)[native-inputs]: Likewise. (texlive-latex-pgf)[propagated-inputs]: Likewise. (texlive-beamer)[propagated-inputs]: Likewise. Ludovic Courtès
2021-09-04gnu: vc: Update to 1.4.2....* gnu/packages/maths.scm (vc): Update to 1.4.2. Tobias Geerinckx-Rice
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