| Age | Commit message (Expand) | Author |
|---|
| 2022-07-31 | gnu: qttools: Rename to qttools-5....Automated with:
git grep -l qttools | xargs sed 's/\bqttools\b/\0-5/g' -i
git checkout NEWS
| Maxim Cournoyer |
| 2022-07-31 | gnu: qtsvg: Rename variable to qtsvg-5....This is in preparation of the qtsvg update to version 6.
This change was automated via the following command:
git grep -l '\bqtsvg\b' | xargs sed 's/qtsvg/qtsvg-5/g' -i
| Maxim Cournoyer |
| 2022-07-15 | gnu: gmsh: Update to 4.10.5....* gnu/packages/maths.scm (gmsh): Update to 4.10.5.
[source]: Reindent.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Paul A. Patience |
| 2022-07-15 | gnu: gmsh: Remove trailing booleans....* gnu/packages/maths.scm (gmsh)[snippet, arguments]: Remove trailing
booleans.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Paul A. Patience |
| 2022-07-15 | gnu: gmsh: Remove input labels....* gnu/packages/maths.scm (gmsh)[inputs]: Remove labels.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Paul A. Patience |
| 2022-07-13 | gnu: elpa: Update source URL....Fixes <https://issues.guix.gnu.org/46460>.
* gnu/packages/maths.scm (elpa): Update source URL.
Reported-by: Danny Milosavljevic <dannym@scratchpost.org>
| Maxim Cournoyer |
| 2022-07-04 | gnu: nauty: Update package style....* gnu/packages/maths.scm (nauty)[arguments]: Use G-expressions. Remove
trailing #T.
| Nicolas Goaziou |
| 2022-07-04 | gnu: nauty: Update to 2.7r4....* gnu/packages/maths.scm (nauty): Update to 2.7r4.
| Nicolas Goaziou |
| 2022-07-04 | gnu: Add giza...* gnu/packages/maths.scm (giza): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Sharlatan Hellseher |
| 2022-07-04 | gnu: z3: Prefer CMake to build the package....Z3 developer recommends to use CMake to build Z3 except the OCaml bindings.
Use CMake also enable us to cross compile z3.
* gnu/packages/maths.scm (z3)[build-system]: Use cmake-build-system.
[arguments]<#:configure-flags>: Add flags for CMake.
<#:phases>: Remove stale phase 'fix-compatability'.
In phase 'check', build the z3 test binary and don't test when cross
compiling.
Add phase 'compile-python-modules' phase to generate python bytecode cache for
z3 python binding.
Add phase 'fix-z3-library-path' to help z3 pythong binding to find the z3
shared library.
(ocaml-z3)[build-system]: Override the inherited value with 'gnu-build-system'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Zhu Zihao |
| 2022-07-04 | gnu: z3: Update to 4.8.17....* gnu/packages/maths.scm (z3): Update to 4.8.17.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Zhu Zihao |
| 2022-07-04 | gnu: z3: Use G-expressions....* gnu/packages/maths.scm (z3)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Zhu Zihao |
| 2022-07-01 | gnu: mcrl2: Update to 202206.0....* gnu/packages/patches/mcrl2-fix-1687.patch,
gnu/packages/patches/mcrl2-fix-counterexample.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mcrl2): Update to 202206.0 and use them.
| Jan (janneke) Nieuwenhuizen |
| 2022-06-30 | gnu: octave: Update to 7.1.0....* gnu/packages/maths.scm (octave): Update to 7.1.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Greg Hogan |
| 2022-06-23 | gnu: hypre: Add missing dependencies on latex fonts....* gnu/packages/maths.scm (hypre)[native-inputs]: Add TEXLIVE-COURIER and
TEXLIVE-HELVETIC.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ontje Lünsdorf |
| 2022-06-08 | Merge branch 'master' into staging | Ludovic Courtès |
| 2022-06-06 | gnu: itpp: Avoid embedding build dates....* gnu/packages/maths.scm (itpp): Add 'set-man-page-date and
'set-force-source-date phases.
| Vagrant Cascadian |
| 2022-06-01 | Merge remote-tracking branch 'origin/master' into staging | Efraim Flashner |
| 2022-05-31 | gnu: Remove python2-kiwisolver....* gnu/packages/maths.scm (python2-kiwisolver): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-numpy....* gnu/packages/python-xyz.scm (python2-numpy): Delete variable.
(python2-numpy-1.8): Likewise.
(python-numpy)[properties]: Delete field.
* gnu/packages/maths.scm (flann): Delete comment.
* gnu/packages/chemistry.scm (with-numpy-1.8): Delete procedure.
| Maxim Cournoyer |
| 2022-06-04 | gnu: ruby-asciimath: Update to 2.0.4....gnu/packages/math.scm (ruby-asciimath): Update to 2.0.4.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| SeerLite |
| 2022-05-28 | gnu: nlopt: Update to 2.7.1....* gnu/packages/maths.scm (nlopt): Update to 2.7.1.
[source]: Fetch from git.
[build-system]: Use cmake-build-system.
[arguments]: Adjuts 'set-libnlopt-file-name phase.
[inputs]: Replace guile-2.0 with guile-3.0; add octave and python.
[native-inputs]: Add swig.
| Ricardo Wurmus |
| 2022-05-15 | gnu: openblas: Remove input labels....* gnu/packages/maths.scm (openblas)[inputs, native-inputs]: Remove labels.
[arguments]: In 'set-extralib' phase, use 'search-input-file'.
| Ludovic Courtès |
| 2022-05-15 | gnu: openblas: Update to 0.3.20...* gnu/packages/maths.scm (openblas): Update to 0.3.20.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Aurora |
| 2022-05-05 | gnu: Add n2p2....* gnu/packages/maths.scm (n2p2): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| Pierre-Antoine Bouttier |
| 2022-05-03 | gnu: dealii: Update to 9.3.3....* gnu/packages/maths.scm (dealii): Update to 9.3.3.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
Delete file.
* gnu/packages/patches/dealii-fix-sundials.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: dealii: Add SUNDIALS dependency....* gnu/packages/maths.scm (dealii)[propagated-inputs]: Add sundials-5.
Reformat list to clarify comment.
(dealii-openmpi)[propagated-inputs]: Add sundials-openmpi-5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: dealii-openmpi: Remove input labels....* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Remove labels.
[propagated-inputs]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: dealii: Remove trailing booleans....* gnu/packages/maths.scm (dealii)[snippet]: Remove trailing boolean (and
therefore the 'begin').
[native-inputs, inputs]: Reindent.
[arguments]<#:phases>: Remove trailing boolean.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: sundials: Add 5.8.0....* gnu/packages/maths.scm (sundials-5, sundials-openmpi-5): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: sundials: Update to 6.2.0....* gnu/packages/maths.scm (sundials): Update to 6.2.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: sundials-openmpi: Add HYPRE dependency....* gnu/packages/maths.scm (sundials-openmpi)[propagated-inputs]: Add
hypre-openmpi.
[arguments]<#:configure-flags>: Add -DENABLE_HYPRE, -DHYPRE_INCLUDE_DIR
and -DHYPRE_LIBRARY_DIR.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: sundials: Fix various issues....This commit fixes various issues. First, some of SUNDIALS's CMake
variables were renamed at some point between 5.2.0 and 5.7.0, in
particular KLU_ENABLE, which was changed to ENABLE_KLU. Since
sundials-julia is essentially SUNDIALS 5.2.0, its configure flags need
to be different from those of the sundials package. Second, commit
61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79, which updated SUNDIALS to
6.1.1, accidentally completely disabled PETSc support for
sundials-openmpi (PETSc is supported only with MPI) by removing the
relevant configure flags. Third, SUNDIALS's default index size is
64 bits, but PETSc's is 32 bits, and they need to be the same; this
issue is discussed in the next three paragraphs.
The default index size in SUNDIALS 3.1.1 (which was the sundials
package's version previous to the aforementioned commit) was also
64 bits (though it was configured through the SUNDIALS_INDEX_TYPE CMake
variable, which could take the values INT64_T or INT32_T), but
SUNDIALS's configure script didn't warn of any incompatibility with
PETSc's 32-bit indices. I don't know if this was an accidental omission
from the configure script or if SUNDIALS's index size didn't have to
correspond to PETSc's at the time.
Keeping 64-bit indices in SUNDIALS would require adding a package for
PETSc with 64-bit indices (using the --with-64-bit-indices configure
flag), possibly named petsc64-openmpi (to follow the style of the SCOTCH
packages, i.e., scotch, scotch32, etc., though there the unadorned
package name represents the 64-bit version, unlike the unadorned petsc),
which would in turn require a package for METIS with 64-bit
indices (using IDXTYPEWIDTH=64). However, SUNDIALS is an optional
dependency of deal.II, both of which have PETSc as an optional
dependency, and deal.II's index size (which defaults to 32 bits) must
match PETSc's. In other words, the current deal.II package can build
with SUNDIALS only if SUNDIALS has 32-bit indices.
Furthermore, users needing 64-bit indices in SUNDIALS probably also need
them in PETSc and other libraries. If and when 64-bit indices are deemed
necessary, we can add all the package variations at once (for SUNDIALS,
PETSc, METIS, deal.II and any others).
* gnu/packages/maths.scm (sundials)[source]: Reuse version in URL.
[native-inputs]: Capitalize and punctuate comment.
[inputs]: Remove petsc, now unnecessary gfortran, and obsolete
comment. Move TODO item to sundials-openmpi.
[arguments]<#:configure-flags>: Add -DSUNDIALS_INDEX_SIZE=32 to match
PETSc's 32-bit indices. Remove obsolete -DEXAMPLES_ENABLE_F77,
-DEXAMPLES_ENABLE_F90 and -DFCMIX_ENABLE. Mention new but currently
unusable -DBUILD_FORTRAN_MODULE_INTERFACE and
-DEXAMPLES_ENABLE_F2003. Rename KLU_ENABLE to ENABLE_KLU.
(sundials-openmpi): Use package/inherit.
[inputs]: Move openmpi and petsc-openmpi from here...
[propagated-inputs]: ...to here. Clarify comment.
[arguments]<#:configure-flags>: Add -DENABLE_PETSC and -DPETSC_DIR, the
equivalents of which were accidentally removed in commit
61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79.
<#:phases>: Replace a tab with spaces.
[synopsis]: Replace OpenMPI with MPI to conform to other package
synopses.
(sundials-julia)[inputs]: Add gfortran.
[arguments]<#:configure-flags>: Set only, and manually, -DCMAKE_C_FLAGS,
-DSUNDIALS_INDEX_SIZE, -DKLU_ENABLE, -DKLU_INCLUDE_DIR,
-DKLU_LIBRARY_DIR and -DLAPACK_ENABLE instead of inheriting from the
sundials package, because some of SUNDIALS's CMake variables have
changed name.
[synopsis]: Capitalize “LAPACK”.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: petsc-openmpi: Fix header inclusions....* gnu/packages/maths.scm (petsc-openmpi)[arguments]: Add
'patch-header-inclusions' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-26 | gnu: nomad-optimizer: Disable failing test....* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Disable the
examples/advanced/library/PSDMads test.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: lrslib: Update to 7.2....* gnu/packages/maths.scm (lrslib): Update to 7.2.
| Andreas Enge |
| 2022-04-19 | gnu: nomad-optimizer: Fix some tests....* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: nomad-optimizer: Update to 4.2.0....* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: nomad-optimizer: Remove trailing booleans....* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: nomad-optimizer: Remove input labels....* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: gmsh: Update to 4.9.5....* gnu/packages/maths.scm (gmsh): Update to 4.9.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: gnuplot: Update to 5.4.3....* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-14 | gnu: sundials: Remove input labels....* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
| Ludovic Courtès |
| 2022-04-14 | gnu: sundials: Update to 6.1.1....* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags. Change "MPI_ENABLE" to "ENABLE_MPI".
| Ludovic Courtès |
| 2022-03-31 | gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux....* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-18 | gnu: petsc-openmpi: Remove input labels....* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Adjust label name for hdf5.
| Ludovic Courtès |
| 2022-03-18 | gnu: petsc-openmpi: Fix compilation with Scotch 7.0....* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add SCOTCH:METIS.
[arguments]: Add 'adjust-pt-scotch-library-names' phase.
| Ludovic Courtès |
| 2022-03-07 | gnu: scotch: Explicitly pass "-DINTSIZE" to CMake....Previously, the 'scotch' and 'pt-scotch' packages would use the default
int size, which turned out to be 32 on x86_64-linux instead of 64 as it
used to be in Scotch 6.x.
* gnu/packages/maths.scm (scotch)[arguments]: Add "-DINTSIZE" to #:configure-flags.
(scotch32)[arguments]: Likewise.
(pt-scotch)[arguments]: Likewise.
(pt-scotch32)[arguments]: Likewise.
| Ludovic Courtès |
| 2022-03-02 | gnu: hypre: Remove input labels....* gnu/packages/maths.scm (hypre)[native-inputs, inputs]: Remove labels.
(hypre-openmpi)[inputs]: Use 'modify-inputs'.
| Ludovic Courtès |
| 2022-03-02 | gnu: texlive-latex-wrapfig: Rename to "texlive-wrapfig"....* gnu/packages/tex.scm (texlive-latex-wrapfig): Rename to...
(texlive-wrapfig): ... this.
(texlive-latex-wrapfig): Define as deprecated.
* gnu/packages/maths.scm (hypre)[native-inputs]: Use new name.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
(python-numpy-documentation): Likewise.
| Ludovic Courtès |
