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2023-02-19gnu: Use HTTPS package home pages wherever possible....* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS. * gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise. * gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]: Likewise. * gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise. * gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise. * gnu/packages/astronomy.scm (casacore, sextractor, libnova) (xplanet)[home-page]: Likewise. * gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao) (freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms) (libmodplug, libxmp, xmp, sox, drc, gsm, gnaural) (streamripper)[home-page]: Likewise. * gnu/packages/authentication.scm (pamtester)[home-page]: Likewise. * gnu/packages/backup.scm (grsync)[home-page]: Likewise. * gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma) (r-plgem)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1) (bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard) (java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools) (snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip) (libsbml)[home-page]: Likewise. * gnu/packages/build-tools.scm (tup)[home-page]: Likewise. * gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools) (cd-discid)[home-page]: Likewise. * gnu/packages/check.scm (cunit, python-nose) (python-pyhamcrest)[home-page]: Likewise. * gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise. * gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise. * gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise. * gnu/packages/compression.scm (p7zip)[home-page]: Likewise. * gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial) (r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook) (r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags) (r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm) (r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet) (r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde) (r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels) (r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom) (r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat) (r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]: Likewise. * gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13) (rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20) (rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20) (rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20) (rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise. * gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise. * gnu/packages/curl.scm (curlpp)[home-page]: Likewise. * gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger) (libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers) (soci)[home-page]: Likewise. * gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise. * gnu/packages/debug.scm (remake)[home-page]: Likewise. * gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise. * gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise. * gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise. * gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise. * gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise. * gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise. * gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise. * gnu/packages/electronics.scm (xoscope)[home-page]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu) (emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel) (emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc) (emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap) (emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+) (emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise. * gnu/packages/embedded.scm (sdcc)[home-page]: Likewise. * gnu/packages/engineering.scm (asco, libngspice, libspnav) (openctm)[home-page]: Likewise. * gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise. * gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]: Likewise. * gnu/packages/finance.scm (gbonds)[home-page]: Likewise. * gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]: Likewise. * gnu/packages/fltk.scm (ntk)[home-page]: Likewise. * gnu/packages/fonts.scm (font-terminus, font-tex-gyre) (font-comic-neue)[home-page]: Likewise. * gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]: Likewise. * gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave) (python-myhdl)[home-page]: Likewise. * gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise. * gnu/packages/ftp.scm (weex)[home-page]: Likewise. * gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise. Tobias Geerinckx-Rice
2023-02-21gnu: python-clingo: Fix invalid G-expression input....* gnu/packages/maths.scm (python-clingo)[arguments]: Add 'imported-modules' and 'modules' in order to access to 'python:site-packages'. [version]: Explicitly reuse from the package 'clingo'. Simon Tournier
2023-02-19gnu: Add python-clorm....* gnu/packages/maths.scm (python-clorm): New variable. Liliana Marie Prikler
2023-02-19gnu: python-clingo: Install distribution information....* gnu/packages/maths.scm (python-clingo)[#:phases]: Add ‘install-distinfo’. Liliana Marie Prikler
2023-02-17gnu: Make nothing depend on QtWebKit....This is required for <https://issues.guix.gnu.org/53289>. * gnu/packages/qt.scm (python-pyqt)[inputs]: Remove qtwebkit. (python-pyqt-without-qtwebkit): Remove variable. (python-pyqtwebengine)[inputs]: Replace python-pyqt-without-qtwebkit with python-pyqt. * gnu/packages/backup.scm (vorta)[inputs]: Likewise. * gnu/packages/ebook.scm (calibre)[inputs]: Likewise. [arguments]: Adjust accordingly. * gnu/packages/education.scm (anki)[inputs]: Replace python-pyqt-without-qtwebkit with python-pyqt. * gnu/packages/kde-games.scm (kajongg)[inputs]: Likewise. * gnu/packages/maths.scm (veusz)[inputs]: Likewise. * gnu/packages/music.scm (frescobaldi)[inputs]: Likewise. (picard)[inputs]: Likewise. * gnu/packages/orange.scm (orange)[inputs]: Likewise. * gnu/packages/pdf.scm (flyer-composer)[inputs]: Likewise. * gnu/packages/python-check.scm (python-pytest-qt)[propagated-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Likewise. (python-pyqtgraph)[propagated-inputs]: Likewise. * gnu/packages/radio.scm (gnuradio)[inputs]: Likewise. * gnu/packages/video.scm (openshot)[inputs]: Likewise. * gnu/packages/vpn.scm (openconnect-sso)[inputs]: Likewise. * gnu/packages/web-browsers.scm (qutebrowser)[inputs]: Likewise. Leo Famulari
2023-02-11gnu: Remove opencascade-oce....This package is unmaintained by upstream, has no dependents and was replaced by opencascade-occt. * gnu/packages/maths.scm (opencascade-oce): Remove variable. * gnu/packages/patches/opencascade-oce-glibc-2.26.patch: Remove file. * gnu/local.mk: Unregister it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego
2023-02-08gnu: wxmaxima: Update to 22.12.0....* gnu/packages/maths.scm (wxmaxima): Update to 22.12.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andy Tai
2023-01-28gnu: octave: Update to 7.3.0....* gnu/packages/maths.scm (octave): Update to 7.3.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Andy Tai
2023-01-27gnu: hypre: Mark as tunable....* gnu/packages/maths.scm (hypre)[properties]: New field. Ludovic Courtès
2023-01-03gnu: veusz: Don't depend on QtWebKit....* gnu/packages/maths.scm (veusz)[inputs]: Change from PYTHON-PYQT to PYTHON-PYQT-WITHOUT-QTWEBKIT. [arguments]: Use SEARCH-INPUT-DIRECTORY instead of label. Marius Bakke
2022-12-23gnu: netcdf: Update to 4.9.0....* gnu/packages/maths.scm (netcdf): Update to 4.9.0. [source]: Use new URI. [inputs]: Add libxml2 and unzip. [arguments]: Update 'configure-flags'. Add 'fix-test-rcmerge' phase. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Roman Scherer
2022-12-15gnu: Add python-telingo....* gnu/packages/patches/python-telingo-fix-comparison.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/maths.scm (python-telingo): New variable. Liliana Marie Prikler
2022-12-15gnu: Add python-clingo....* gnu/packages/maths.scm (python-clingo): New variable. Liliana Marie Prikler
2022-12-15gnu: clingo: Use G-Expressions....* gnu/packages/maths.scm (clingo)[arguments]: Convert to list of G-Expressions. Liliana Marie Prikler
2022-12-15gnu: clingo: Update to 5.6.2....* gnu/packages/maths.scm (clingo): Update to 5.6.2. [source]: Unbundle clasp and catch. [arguments]<#:configure-flags>: Add “-DCLINGO_USE_LOCAL_CLASP=off” and “-DCLINGO_USE_LOCAL_CATCH=off”. [inputs]: Add catch2-3.1. [native-inputs]: Add pkg-config. Liliana Marie Prikler
2022-12-08gnu: suitesparse: Skip building graphblas on riscv64-linux....* gnu/packages/maths.scm (suitesparse)[arguments]: Add a phase when building for riscv64-linux to skip building graphblas. Efraim Flashner
2022-12-08gnu: julia: Update to 1.8.3....* gnu/packages/julia.scm (julia): Update to 1.8.3. [source]: Remove one patch. [arguments]: Adjust 'prepare-deps phase to changes in inputs. Remove custom 'use-system-libwhich, 'change-number-of-precompiled-statements, 'symlink-libraries phases. In 'fix-include-and-link-paths phase remove substitution for utf8proc linking and adjust libuv linking. Fix reference to shell in 'replace-default-shell phase. Adjust the 'shared-objects-path phase to changes in the source. Change the 'enable-parallel-tests phase for upstream changes. Adjust the 'adjust-test-suite phase to be more robust. Change the 'disable-broken-tests phase to help the test suite pass. Rename 'symlink-llvm-utf8proc phase to 'symlink-missing-libraries and add two more. Adjust make-flags for changes in shared system libraries. Reorder make-flags to changes in the source. Except for aarch64, use the defaults for choosing to use 64-bit blas. [inputs]: Add libblastrampoline. Replace libgit-1.1 with libgit-1.3, utf8proc-2.7.1 with utf8proc-2.8.0. [native-inputs]: Replace python-2 with python. (libunwind-julia): Update to 1.5.0. [source]: Update patches. * gnu/packages/libevent.scm (libuv-julia): Update to 2.0.0-4.e6f0e49. [arguments]: Also build static library, build position-independent-code. * gnu/packages/llvm.scm (llvm-julia): Update to llvm-13, following upstream's build instructions. * gnu/packages/maths.scm (openlibm): Update to 0.8.1. * gnu/packages/textutils.scm (utf8proc-2.7.1): Update and rename to utf8proc-2.8.0. [native-inputs]: Update unicode to 14.0.0. * gnu/packages/tls.scm (mbedtls-apache): Update to 2.28.0. [source]: Remove snippet. [arguments]: Remove trailing #t from phases. * gnu/packages/patches/julia-allow-parallel-build.patch, (julia-patch): Update version string to 1.8.2. gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Co-authored-by: Akira Kyle <akira@akirakyle.com> Efraim Flashner
2022-12-08gnu: Add libblastrampoline....* gnu/packages/maths.scm (libblastrampoline): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Akira Kyle
2022-11-27gnu: Add libfixmath....* gnu/packages/maths.scm (libfixmath): New variable. Ricardo Wurmus
2022-11-26gnu: Add cryptominisat....* gnu/packages/maths.scm (cryptominisat): New variable. Co-authored-by: Maximilian Heisinger <mail@maxheisinger.at> Liliana Marie Prikler
2022-11-26gnu: Add louvain-community....* gnu/packages/maths.scm (louvain-community): New variable. Liliana Marie Prikler
2022-11-26gnu: Add lingeling....* gnu/packages/maths.scm (lingeling): New variable. Liliana Marie Prikler
2022-11-26gnu: Add aiger....* gnu/packages/maths.scm (aiger): New variable. Liliana Marie Prikler
2022-11-24gnu: clasp: Update to 3.3.9....* gnu/packages/maths.scm (clasp): Update to 3.3.9. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> jgart
2022-11-22gnu: octave: Update to 7.2.0....* gnu/packages/maths.scm (octave): Update to 7.2.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-11-22gnu: suitesparse: Update to 5.13.0....* gnu/packages/maths.scm (suitesparse): Update to 5.13.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-11-22gnu: dune-alugrid: Fix build failure....* gnu/packages/maths.scm (dune-alugrid)[arguments]: Provide the INPUTS key in build-tests phase. Marius Bakke
2022-11-22gnu: arpack-ng: Remove 3.3.0....This package fails to build and has no users in Guix. * gnu/packages/maths.scm (arpack-ng-3.3.0): Remove variable. Marius Bakke
2022-11-21gnu: opencascade-occt: Update to 7.6.2....* gnu/packages/maths.scm (opencascade-occt): Update to 7.6.2. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Artyom V. Poptsov
2022-11-14gnu: cddlib: Add source file-name....* gnu/packages/maths.scm (cddlib)[source]: Add file-name field. Efraim Flashner
2022-10-24gnu: Various typo fixes....* gnu/packages/emacs-xyz.scm (emacs-popup-kill-ring)[description]: Fix very sneaky "This packages" variant. Thanks to nckhexen! * gnu/packages/bioinformatics.scm (r-icellnet)[description]: Fix use of "allows to". * gnu/packages/check.scm (python-pytest-freezegun)[description]: Ditto. * gnu/packages/linux.scm (tp-smapi-module)[description]: Ditto. * gnu/packages/mail.scm (procmail): Ditto. * gnu/packages/maths.scm (maxima): Ditto. * gnu/packages/samba.scm (wsdd)[description]: Ditto. * gnu/packages/ssh.scm (openssh): Ditto. Vagrant Cascadian
2022-10-16Merge branch 'staging'Marius Bakke
2022-10-15gnu: fp16: Fix build on i686-linux....* gnu/packages/patches/fp16-implicit-double.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (fp16)[source](patches): Add it. Marius Bakke
2022-10-12Merge remote-tracking branch 'origin/master' into staging...Conflicts: gnu/packages/gnuzilla.scm gnu/packages/graphics.scm gnu/packages/gstreamer.scm gnu/packages/gtk.scm gnu/packages/kde-frameworks.scm gnu/packages/video.scm Efraim Flashner
2022-10-02gnu: units: Update to 2.22....* gnu/packages/maths.scm (units): Update to 2.22. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Mike Swanson
2022-09-27Merge branch 'master' into staging....With resolved conflicts in: gnu/local.mk gnu/packages/crates-io.scm Maxim Cournoyer
2022-09-22gnu: lablgtk3: Update to 3.1.2....* gnu/packages/ocaml.scm (lablgtk3): Update to 3.1.2. [arguments]: Do not build extensions anymore (missing dependency) * gnu/packages/games.scm (laby)[inputs]: Use `ocaml-lablgtk3-sourceview3'. * gnu/packages/maths.scm (frama-c)[inputs]: Use `ocaml-lablgtk3-sourceview3'. * gnu/packages/coq.scm (coq-ide)[inputs]: Use `ocaml-lablgtk3-sourceview3'. Julien Lepiller
2022-08-27Merge branch 'master' into stagingMarius Bakke
2022-08-15gnu: Add kissat....* gnu/packages/maths.scm (kissat): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Maximilian Heisinger
2022-08-14gnu: itpp: Remove non-deterministic log file....* gnu/packages/maths.scm (itpp)[arguments]: Add 'delete-formulas-log phase. Vagrant Cascadian
2022-08-11Merge branch 'master' into stagingMarius Bakke
2022-08-08gnu: suitesparse: Update to 5.12.0....* gnu/packages/maths.scm (suitesparse): Update to 5.12.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-08-10gnu: frama-c: Use lablgtk3....* gnu/packages/maths.scm (frama-c): Build the graphical interface. Julien Lepiller
2022-08-10gnu: maxima: Fix to find info files....The Maxima command ‘describe’ allows to pick the relevant portions from Maxima’s Texinfo docs. However it does not support reading gzipped info files. * gnu/packages/maths.scm (maxima)[arguments]<phases>: Delete 'compress-documentation phase. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Daniel Meißner
2022-08-09gnu: cddlib: Update to 0.94m....* gnu/packages/maths.scm (cddlib): Update to 0.94m. [source]: Move to git, following the upstream decision. [native-inputs]: New field. [arguments]: New field to have docdir include the version number. Co-authored-by: Andreas Enge <andreas@enge.fr> vicvbcun
2022-08-09gnu: wxmaxima: Update to 22.05.0....* gnu/packages/maths.scm (wxmaxima): Update to 22.05.0. Andreas Enge
2022-08-09gnu: maxima: Update to 5.46.0....* gnu/packages/maths.scm (maxima): Update to 5.46.0. Andreas Enge
2022-08-05gnu: mumps: Add alternate source code URL....* gnu/packages/maths.scm (mumps)[source]: Add alternate URL. Ludovic Courtès
2022-08-05gnu: mumps: Update to 5.5.1...* gnu/packages/maths.scm (mumps): Update to 5.5.1. Stop applying patches as the build configuration has been updated upstream. Allow for further optimized BLR compression by specifying the -DBLR_MT build option. * gnu/packages/patches/mumps-build-parallelism.patch: File removed. * gnu/packages/patches/mumps-shared-libseq.patch: File removed. * gnu/packages/patches/mumps-shared-mumps.patch: File removed. * gnu/packages/patches/mumps-shared-pord.patch: File removed. Signed-off-by: Ludovic Courtès <ludo@gnu.org> FELŠÖCI Marek
2022-08-05gnu: veusz: Fix build....* gnu/packages/maths.scm (veusz)[arguments] Fix lookup of qtsvg path in wrap-executable phase. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Felix Gruber