| Age | Commit message (Expand) | Author |
|---|
| 2021-02-03 | Merge branch 'master' into core-updates | Christopher Baines |
| 2021-02-01 | gnu: Adjust package collection to Wrap using GUIX_PYTHONPATH....This change was automated using:
$ git ls-files | grep .scm | \
xargs sed 's/(getenv "PYTHONPATH")/(getenv "GUIX_PYTHONPATH")/' -i
$ git ls-files | grep .scm | \
xargs sed 's/`("PYTHONPATH"/`("GUIX_PYTHONPATH"/' -i
* gnu/packages/admin.scm (nmap):
(dstat): Wrap using GUIX_PYTHONPATH.
* gnu/packages/audio.scm (jack-2):
(carla): Likewise.
* gnu/packages/benchmark.scm (fio): Likewise.
* gnu/packages/bioinformatics.scm (couger): Likewise.
(gess, find-circ, filtlong, nanopolish): Likewise.
* gnu/packages/cdrom.scm (cdemu-client): Likewise.
* gnu/packages/chemistry.scm (avogadro): Likewise.
* gnu/packages/connman.scm (econnman): Likewise.
* gnu/packages/cups.scm (hplip): Likewise.
* gnu/packages/debug.scm (scanmem): Likewise.
* gnu/packages/display-managers.scm (lightdm): Likewise.
* gnu/packages/ebook.scm (cozy): Likewise.
* gnu/packages/education.scm (anki): Likewise.
* gnu/packages/engineering.scm (kicad, volk, freecad): Likewise.
* gnu/packages/game-development.scm (renpy): Likewise.
* gnu/packages/games.scm (roguebox-adventures)
(seahorse-adventures, kajongg): Likewise.
* gnu/packages/gimp.scm (gimp, glimpse): Likewise.
* gnu/packages/glib.scm (itstool): Likewise.
* gnu/packages/gnome.scm (gnome-music, gtg, rhythmbox): Likewise.
(eolie, d-feet, gedit, caribou, gnome-shell, authenticator)
(gnome-todo, orca, passwordsafe, terminator, setzer)
(libratbag, komikku): Likewise.
* gnu/packages/gps.scm (gpsd): Likewise.
* gnu/packages/gtk.scm (gtk-doc): Likewise.
* gnu/packages/ibus.scm (ibus, ibus-libpinyin, ibus-anthy)
(ibus-libhangul): Likewise.
* gnu/packages/inkscape.scm (inkscape-1.0): Likewise.
* gnu/packages/linux.scm (bcc): Likewise.
* gnu/packages/mail.scm (notifymuch): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/music.scm (solfege): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
* gnu/packages/patchutils.scm (patchwork): Likewise.
* gnu/packages/photo.scm (rapid-photo-downloader, entangle): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/presentation.scm (presentty): Likewise.
* gnu/packages/screen.scm (byobu): Likewise.
* gnu/packages/storage.scm (ceph): Likewise.
* gnu/packages/syndication.scm (liferea): Likewise.
* gnu/packages/task-management.scm (blanket): Likewise.
* gnu/packages/text-editors.scm (manuskript): Likewise.
* gnu/packages/version-control.scm (gitless, cgit, git-when-merged)
(git-imerge): Likewise.
* gnu/packages/video.scm (pitivi): Likewise.
* gnu/packages/virtualization.scm (criu): Likewise.
* gnu/packages/xfce.scm (catfish): Likewise.
| Maxim Cournoyer |
| 2021-01-29 | gnu: Replace all uses of texlive-union by texlive-updmap.cfg....* doc/build.scm (pdf-manual) Replace texlive-union by texlive-updmap.cfg.
* gnu/packages/algebra.scm (pari-gp): Likewise.
* gnu/packages/bioinformatics.scm (discrover, velvet): Likewise.
* gnu/packages/chez.scm (chez-scheme, chez-web, chez-sockets): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/emacs-xyz.scm (emacs-auctex): Likewise.
* gnu/packages/engineering.scm (fastcap): Likewise.
* gnu/packages/guile-xyz.scm (emacsy, guile-cv): Likewise.
* gnu/packages/lisp.scm (sbcl): Likewise.
* gnu/packages/maths.scm (octave, hypre): Likewise.
* gnu/packages/music.scm (lilypond): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/python-xyz.scm (python-numpy-documentation)
(python-matplotlib-documentation, python-ipython-documentation)
(python-pypandoc): Likewise.
* gnu/packages/radio.scm (gnuradio, libosmo-dsp): Likewise.
* gnu/packages/scheme.scm (mit-scheme): Likewise.
* gnu/packages/statistics.scm (r-with-tests): Likewise.
* gnu/packages/tex.scm (simple-texlive-package)
(texlive-xmltex, texlive-tiny, texlive-jadetex, teximpatient, lyx): Likewise.
| Maxim Cournoyer |
| 2021-01-17 | gnu: wxmaxima: Update to 20.12.2....* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2.
[arguments]: Remove #:test-target and disable tests. Remove 'pre-check
phase.
[native-inputs]: Remove xorg-server-for-tests.
[inputs]: Add libomp.
| Kei Kebreau |
| 2021-01-17 | gnu: gnuplot: Update to 5.4.1....* gnu/packages/maths.scm (gnuplot): Update to 5.4.1.
[arguments]: Set GNUTERM in #:make-flags.
| Kei Kebreau |
| 2021-01-13 | Merge branch 'staging' into 'core-updates'....Conflicts:
gnu/local.mk
gnu/packages/cmake.scm
gnu/packages/curl.scm
gnu/packages/gl.scm
gnu/packages/glib.scm
gnu/packages/guile.scm
gnu/packages/node.scm
gnu/packages/openldap.scm
gnu/packages/package-management.scm
gnu/packages/python-xyz.scm
gnu/packages/python.scm
gnu/packages/tls.scm
gnu/packages/vpn.scm
gnu/packages/xorg.scm
| Maxim Cournoyer |
| 2021-01-04 | gnu: suitesparse: Install libraries into /lib....* gnu/packages/maths.scm (suitesparse)[arguments]: Add to
configure-flags to install programs built with cmake to use 'lib', not
'lib64.'
| Efraim Flashner |
| 2020-12-31 | gnu: matio: Update to 1.5.19....* gnu/packages/maths.scm (matio): Update to 1.5.19.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Vincent Legoll |
| 2020-12-27 | gnu: openblas: Update to 0.3.13....* gnu/packages/maths.scm (openblas): Update to 0.3.13.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2020-12-23 | gnu: hypre: Remove obsolete build phase....* gnu/packages/maths.scm (hypre)[arguments]: Remove obsolete build phase
"set-HOME".
| Ricardo Wurmus |
| 2020-12-22 | gnu: octave, octave-cli: Update to 6.1.0....* gnu/packages/maths.scm (octave, octave-cli): Update to 6.1.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2020-12-17 | gnu: glpk: Don't build static library....* gnu/packages/maths.scm (glpk)[arguments]: Add configure-flag to skip
static library.
| Efraim Flashner |
| 2020-12-17 | gnu: glpk: Update to 5.0....* gnu/packages/maths.scm (glpk): Update to 5.0.
(glpk-4.65): New variable.
* gnu/packages/algebra.scm (giac)[inputs]: Replace glpk with glpk-4.
| Efraim Flashner |
| 2020-12-13 | gnu: veusz: Update to 3.3.1....* gnu/packages/maths.scm (veusz): Update to 3.3.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Vinicius Monego |
| 2020-12-12 | gnu: sleef: Update to 3.5.1....* gnu/packages/maths.scm (sleef): Update to 3.5.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Vinicius Monego |
| 2020-12-09 | gnu: dealii: Update to 9.2.0....* gnu/packages/maths.scm (dealii): Update to 9.2.0.
| Eric Bavier |
| 2020-12-08 | gnu: Add tiny-bignum....* gnu/packages/maths.scm (tiny-bignum): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Ryan Prior |
| 2020-12-05 | gnu: superlu-dist: Update to 6.4.0....* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0
[source]: Use git-fetch, as tarballs are no longer published.
* gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first
hunk; they are unnecessary.
| Eric Bavier |
| 2020-12-05 | gnu: scotch: Update to 6.1.0...* gnu/packages/maths.scm (scotch): Update to 6.1.0.
| Eric Bavier |
| 2020-12-01 | gnu: metamath: Update to 0.193....* gnu/packages/maths.scm (metamath): Update to 0.193.
| Tobias Geerinckx-Rice |
| 2020-11-29 | Merge remote-tracking branch 'origin/master' into core-updates | Christopher Baines |
| 2020-11-25 | gnu: gsl: Build shared libraries only....* gnu/packages/maths.scm (gsl)[arguments]: Add #:configure-flags.
| Ludovic Courtès |
| 2020-11-25 | gnu: gsl: Demote conditional phase logic....* gnu/packages/maths.scm (gsl)[arguments]: Move 'cond' within
'modify-phases'.
| Ludovic Courtès |
| 2020-11-17 | gnu: z3: Update to 4.8.9....* gnu/packages/maths.scm (z3): Update to 4.8.9.
(cherry picked from commit dc2de508a38d8e0a3f93e8d6ded225d3a7e32548)
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Martin Becze |
| 2020-11-17 | gnu: units: Update to 2.21....* gnu/packages/maths.scm (units): Update to 2.21.
| Tobias Geerinckx-Rice |
| 2020-11-16 | gnu: z3: Update to 4.8.9....* gnu/packages/maths.scm (z3): Update to 4.8.9.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| Martin Becze |
| 2020-11-15 | gnu: superlu: Update to 5.2.2....* gnu/packages/maths.scm (superlu): Update to 5.2.2.
| Tobias Geerinckx-Rice |
| 2020-11-11 | gnu: python-petsc4py: Fix build with python 3.8....* gnu/packages/maths.scm (python-petsc4py)[source]: Add snippet.
[native-inputs]: New field.
| Paul Garlick |
| 2020-10-26 | gnu: netcdf-fortran: Update to 4.5.3....This allows the package to build with netcdf 4.7.4.
* gnu/packages/maths.scm (netcdf-fortran): Update to 4.5.3.
| Christopher Baines |
| 2020-10-26 | gnu: netcdf: Update to 4.7.4....This will fix an issue building qgis.
* gnu/packages/maths.scm (netcdf): Update to 4.7.4.
[source]: Remove the netcdf-tst_h_par.patch, also change the naming of the
source tarball, as the name seems to have changed for recent releases.
[inputs]: Update hdf5 and add curl.
* gnu/packages/patches/netcdf-tst_h_par.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove deleted patch.
| Christopher Baines |
| 2020-10-23 | gnu: hdf5: Default to 1.10....This is a followup to 593096355501dfd76c2e92b1fbd87f940ab1d1f2.
* gnu/packages/maths.scm (hdf5): Change to HDF5-1.10.
(hdf-java, hdf-eos5, h5check, netcdf, matio)[inputs]: Use HDF5-1.8.
* gnu/packages/java.scm (java-cisd-jhdf5)[inputs]: Likewise.
| Ludovic Courtès |
| 2020-10-19 | Merge branch 'staging'...Conflicts:
gnu/packages/admin.scm
gnu/packages/commencement.scm
gnu/packages/gdb.scm
gnu/packages/llvm.scm
gnu/packages/package-management.scm
gnu/packages/tls.scm
| Maxim Cournoyer |
| 2020-10-08 | gnu: gmsh: Update to 4.6.0....Gmsh bundles METIS 5 released with Apache License 2.0 since upstream commit
eaff7f6477fe876991615cfa4b5832bd5f12994b. Instead, Gmsh is linked with the
package 'metis'.
* gnu/packages/maths.scm (gmsh): Update to 4.6.0.
(propagated-inputs): Replace 'opencascade-oce' by 'opencascade-occt', add
'metis'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| zimoun |
| 2020-10-01 | gnu: SuiteSparse: Update to 5.8.1....From 0d8692dfebc6ac4b515c06612ab8da4c898719eb Mon Sep 17 00:00:00 2001
From: Greg Hogan <code@greghogan.com>
Date: Tue, 29 Sep 2020 11:54:38 +0000
Subject: [PATCH] gnu: SuiteSparse: Update to 5.8.1.
* gnu/packages/maths.scm (suitesparse): Update to 5.8.1.
[arguments]: Remove unnecessary flag and use default blas and lapack.
[inputs]: Add new dependencies for SLIP_LU component.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2020-09-30 | gnu: Fix package references....* gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package
inputs.
* gnu/packages/astronomy.scm (xplanet),
* gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb),
* gnu/packages/bioconductor.scm (r-cummerbund),
* gnu/packages/chicken.scm (chicken),
* gnu/packages/conky.scm (conky),
* gnu/packages/cran.scm (r-latex2exp),
* gnu/packages/crates-io.scm (rust-rgb),
* gnu/packages/databases.scm (mariadb),
* gnu/packages/diffoscope.scm (reprotest),
* gnu/packages/file-systems.scm (glusterfs),
* gnu/packages/finance.scm (electron-cash),
* gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo),
* gnu/packages/geo.scm (grass),
* gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue),
* gnu/packages/gnucash.scm (aqbanking),
* gnu/packages/image.scm (mtpaint),
* gnu/packages/kde-internet.scm (kopete, ktorrent),
* gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer),
* gnu/packages/linphone.scm (liblinphone),
* gnu/packages/maths.scm (ppl),
* gnu/packages/mercury.scm (mercury-minimal),
* gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins,
spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2),
* gnu/packages/networking.scm (restinio),
* gnu/packages/prolog.scm (swi-prolog),
* gnu/packages/python-web.scm (gunicorn),
* gnu/packages/python-xyz.scm (python-docusign-esign),
* gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable),
* gnu/packages/sagemath.scm (python-cypari2),
* gnu/packages/skarnet.scm (s6-linux-init),
* gnu/packages/vpn.scm (sshuttle),
* gnu/packages/web.scm (libcyaml),
* gnu/packages/xdisorg.scm (kbdd),
* gnu/packages/xorg.scm (xpra): Same.
| Efraim Flashner |
| 2020-09-18 | gnu: openblas: Update to 0.3.10....* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Greg Hogan |
| 2020-09-18 | Revert "gnu: openblas: Update to 0.3.10."...This reverts commit c59e9f0a03241ef3c7b8042054fd54e327f7539a because it
triggers too many rebuilds.
| Mathieu Othacehe |
| 2020-09-18 | gnu: openblas: Update to 0.3.10....* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Greg Hogan |
| 2020-09-17 | gnu: hdf5: Update to 1.10.7....Fixes CVE-2018-13870, CVE-2018-13869 and CVE-2018-17435.
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.7.
| Eric Bavier |
| 2020-09-08 | gnu: metamath: Update to 0.192....* gnu/packages/maths.scm (metamath): Update to 0.192.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| B. Wilson |
| 2020-08-27 | gnu: Add libflame....* gnu/packages/maths.scm (libflame): New variable.
| Efraim Flashner |
| 2020-08-27 | gnu: lrslib: Update to 7.1....* gnu/packages/maths.scm (lrslib): Update to 7.1.
| Andreas Enge |
| 2020-08-26 | gnu: octave: Remove unneeded 'source' field....* gnu/packages/maths.scm (octave)[source]: Remove. It had been
unnecessary since b66741edc954f0a17f1ef567e8d612cac87c7b6a.
| Ludovic Courtès |
| 2020-08-26 | gnu: netcdf-parallel-openmpi: Allow MPI tests to pass....* gnu/packages/maths.scm (netcdf-parallel-openmpi)[arguments]: Add
'mip-setup' phase.
| Ludovic Courtès |
| 2020-08-26 | gnu: hdf5-parallel-openmpi: Update to 1.10.6....* gnu/packages/maths.scm (hdf5-parallel-openmpi): Inherit from HDF5-1.10.
| Ludovic Courtès |
| 2020-08-26 | gnu: hdf5: Use 'package/inherit' for variants....* gnu/packages/maths.scm (hdf5-1.10, hdf5-parallel-openmpi): Use
'package/inherit'.
| Ludovic Courtès |
| 2020-08-26 | gnu: hdf5: Distinguish the default hdf5 version....* gnu/packages/maths.scm (hdf5): Rename to...
(hdf-1.8): ... this.
(hdf5-1.10): Adjust accordingly.
(hdf5): New variable.
| Ludovic Courtès |
| 2020-08-16 | gnu: wxmaxima: Update to 20.06.6....* gnu/packages/maths.scm (wxmaxima): Update to 20.06.6.
[arguments]: Add 'patch-doc-path phase.
| Kei Kebreau |
| 2020-08-16 | gnu: Add veusz....* gnu/packages/maths.scm (veusz): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vinicius Monego |
| 2020-08-10 | gnu: Add clapack....* gnu/packages/maths.scm (clapack): New variable.
| Ricardo Wurmus |
