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2020-11-26Merge branch 'master' into stagingMarius Bakke
2020-11-26gnu: python-aiohttp: Update to 3.7.3.Marius Bakke
* gnu/packages/patches/python-aiohttp-3.6.2-no-warning-fail.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-aiohttp)[source](patches): Remove. [arguments]: Use UTIME instead of calling out to 'touch'. Don't delete now-working tests; but disable some new ones. Replace the 'check' phase. [propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS. [native-inputs]: Remove PYTHON-PYTEST-RUNNER, PYTHON-PYTEST-XDIST, PYTHON-PYTEST-TIMEOUT, and PYTHON-PYTEST-FORKED. Add PYTHON-PYTEST and PYTHON-RE-ASSERT.
2020-11-25gnu: openssh: Fix ssh-copy-id.Jesse Gibbons
* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-11-26Merge branch 'master' into stagingMarius Bakke
2020-11-25gnu: Mutt: Update to 2.0.2 [fixes CVE-2020-28896].Leo Famulari
* gnu/packages/mail.scm (mutt): Update to 2.0.2. * gnu/packages/patches/mutt-store-references.patch: Adjust to changes in Mutt 2.0.2.
2020-11-24gnu: mupdf: Use only dynamic linking.Tobias Geerinckx-Rice
* gnu/packages/pdf.scm (mupdf)[source]: Add patch. [arguments]: Build and find the shared library. (zathura-pdf-mupdf)[arguments]: Add a 'remove-libmupdfthird.a-requirement phase to deal with the now-missing static one. * gnu/packages/patches/mupdf-fix-linkage.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23Merge branch 'master' into stagingMarius Bakke
2020-11-23gnu: ungoogled-chromium: Update to 87.0.4280.66-0.1f7cdef.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 87. (arch-patch, %arch-revision, %arch-patches): Remove. (ungoogled-chromium-snippet): Remove %ARCH-PATCHES. (%ungoogled-revision): Set to 1f7cdef6dfa8f612afde8f988131f210612333e0. (%chromium-version): Set to 87.0.4280.66. (ungoogled-chromium)[source]: Update hash. [arguments]: Adjust #:configure-flags for changes in 87. Enable Pipewire support in WebRTC. [native-inputs]: Add WAYLAND. [inputs]: Add PIPEWIRE and WAYLAND. (ungoogled-chromium/wayland): Implement as a wrapper over UNGOOGLED-CHROMIUM. * gnu/packages/patches/ungoogled-chromium-system-nspr.patch: Adjust for 87.
2020-11-23gnu: eigen: Add upstream bugfix patch.Tobias Geerinckx-Rice
This fixes the build of nanopolish, imp, and others. Reported by apteryx in #guix. * gnu/packages/algebra.scm (eigen)[source]: Add patch. * gnu/packages/patches/eigen-remove-openmp-error-counting.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23gnu: python-pydot: Run tests.Efraim Flashner
* gnu/packges/graphviz.scm (python-pydot)[source]: Add patch. [arguments]: Override check phase. [native-inputs]: Add graphviz. * gnu/packages/patches/python-pydot-regression-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-11-23gnu: lsof: Make test failures fatal.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[source]: Add patch to make test suite failures stop the build. * gnu/packages/patches/lsof-fatal-test-failures.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-22gnu: ocaml-cairo2: Patch test phase.Brett Gilio
* gnu/local.mk (ocaml-cairo2-caml_ba_array_fix.patch): Add ref. * gnu/packages/ocaml.scm (ocaml-cairo2): Utilize patch. * gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Add file.
2020-11-22Merge branch 'master' into stagingMarius Bakke
2020-11-21gnu: xpra: Update to 4.0.5.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xpra): Update to 4.0.5. [source]: Remove xpra-4.0.4-norequests.patch. * gnu/packages/patches/xpra-4.0.4-norequests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-20gnu: grim: Remove obsolete patch.Marius Bakke
* gnu/packages/patches/grim-revert-output-rotation.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (grim)[source](patches): Remove.
2020-11-19gnu: gajim: Honour $GAJIM_PLUGIN_PATH.Tobias Geerinckx-Rice
This allows Gajim to find plug-ins installed with Guix. Reported at <http://issues.guix.gnu.org/44730>. However, at the time of pushing both packaged plug-ins (gajim-omemo and gajim-openpgp) require an unstable version of Gajim and will not load. * gnu/packages/messaging.scm (gajim)[arguments]: Replace the ‘add-plugin-dirs’ substitution phase with a... [source]: ...patch that won't silently break in the future. * gnu/packages/patches/gajim-honour-GAJIM_PLUGIN_PATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-19Merge branch 'master' into stagingMarius Bakke
2020-11-18gnu: bitcoin-core: Update to 0.20.1.Simon South
* gnu/packages/finance.scm (bitcoin-core): Update to 0.20.1. [source]: Remove obsolete patch. [native-inputs]: Add autoconf, automake and libtool. [inputs]: Remove protobuf. [arguments]: Add "set-no-git-flag" phase to indicate the build is not taking place within a git repository. * gnu/packages/patches/bitcoin-core-python-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-11-17gnu: icecat: Update to 78.5.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2020-15999, CVE-2020-16012, CVE-2020-26951, CVE-2020-26953, CVE-2020-26956, CVE-2020-26958, CVE-2020-26959, CVE-2020-26960, CVE-2020-26961, CVE-2020-26965, CVE-2020-26966, and CVE-2020-26968. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-11-17Merge remote-tracking branch 'origin/version-1.2.0' into masterMaxim Cournoyer
Conflicts: gnu/packages/bioinformatics.scm The python-pysam package fixed in master was kept instead of the update done in the version-1.2.0 branch.
2020-11-17gnu: tomb: Update to 2.8.Eric Bavier
Fixes CVE-2020-28638. * gnu/packages/crypto.scm (tomb): Update to 2.8 [source]: Remove obsolete patch. * gnu/packages/patches/tomb-fix-errors-on-open.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-16gnu: gcc-vc4: Update to commit 0fe4b83897341742f9df65797474cb0feab4b377.Danny Milosavljevic
* gnu/packages/patches/gcc-6-fix-buffer-size.patch: New file. * gnu/packages/patches/gcc-6-fix-isl-includes.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/embedded.scm (gcc-vc4): Update to commit 0fe4b83897341742f9df65797474cb0feab4b377. [source]: Add the patches from above.
2020-11-16gnu: scribus: Update to 1.5.6.Tobias Geerinckx-Rice
* gnu/packages/scribus.scm (scribus): Update to 1.5.6. [source]: Remove patch. [inputs]: Substitute python for python-2. * gnu/packages/patches/scribus-1.5.5-poppler-0.86-build-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-15Merge branch 'master' into stagingMarius Bakke
2020-11-15gnu: multipath-tools: Update to 0.8.5.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (multipath-tools): Update to 0.8.5. [source]: Remove patch. [arguments]: Add a ‘skip-failing-tests’ phase. * gnu/packages/patches/multipath-tools-sans-systemd.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-15gnu: perl-www-curl: Fix build with curl@7.69.1.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-www-curl)[source]: Add perl-www-curl-fix-struct-void.patch. * gnu/packages/patches/perl-www-curl-remove-symbol.patch: Update. * gnu/packages/patches/perl-www-curl-fix-struct-void.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-14gnu: llvm-9: Standardize patch level.Maxim Cournoyer
Having a non-standard (different than 1) patch level requirement means the patches cannot be composed easily from different origins. The following command was used to remove one level from the llvm-9 patches: sed -e 's|^--- a/|--- |' -e 's|^+++ b/|+++ |' \ gnu/packages/patches/llvm-9* -i * gnu/packages/llvm.scm (llvm-9)[source]: Drop the patch-flags field. Re-indent list of patches. * gnu/packages/patches/llvm-9-fix-bitcast-miscompilation.patch: Strip one level. * gnu/packages/patches/llvm-9-fix-lpad-miscompilation.patch: Likewise. * gnu/packages/patches/llvm-9-fix-scev-miscompilation.patch: Likewise.
2020-11-13gnu: glib: Graft patch to detect changes to the installed applications.Ludovic Courtès
Fixes <https://bugs.gnu.org/35594>. Reported by sirgazil <sirgazil@zoho.com> and others. * gnu/packages/patches/glib-appinfo-watch.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/glib.scm (glib)[replacement]: New field. (glib-with-gio-patch): New variable. (glib-with-documentation): Use 'package/inherit'.
2020-11-12Merge branch 'version-1.2.0'Ludovic Courtès
2020-11-11gnu: icecat: Update to 78.4.1-guix0-preview1 [fixes CVE-2020-26950].Mark H Weaver
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-11-10gnu: oath-toolkit: Update to 2.6.3.Simon Josefsson
* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.3. [source]: Remove obsolete patches. * gnu/packages/patches/oath-toolkit-glibc-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-11-11Merge branch 'master' into stagingMarius Bakke
2020-11-10gnu: sdcc: Remove non-free code.Simon South
* gnu/packages/sdcc.scm (sdcc)[source]: Add snippet to remove bundled non-free source code. Add patch to disable use of non-free code in build scripts and compiler and update documentation to match. * gnu/packages/patches/sdcc-disable-non-free-code.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-11-10gnu: audiofile: Shorten patch file names.Ludovic Courtès
At least 'audiofile-division-by-zero-BlockCodec-runPull.patch' could end up not being included in a tarball. * gnu/packages/patches/audiofile-Check-the-number-of-coefficients.patch: Rename to... * gnu/packages/patches/audiofile-check-number-of-coefficients.patch: ... this. * gnu/packages/patches/audiofile-division-by-zero-BlockCodec-runPull.patch: Rename to... * gnu/packages/patches/audiofile-division-by-zero.patch: ....this. * gnu/packages/patches/audiofile-signature-of-multiplyCheckOverflow.patch: Rename to... * gnu/packages/patches/audiofile-function-signature.patch: ... this. * gnu/packages/patches/audiofile-Fix-multiply-overflow-sfconvert.patch: Rename to.... * gnu/packages/patches/audiofile-multiply-overflow.patch: ... this. * gnu/packages/patches/audiofile-Fix-overflow-in-MSADPCM-decodeSam.patch: Rename to... * gnu/packages/patches/audiofile-overflow-in-MSADPCM.patch: ... this. * gnu/packages/audio.scm (audiofile)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise.
2020-11-10gnu: python2-pygobject@2: Shorten patch file name.Ludovic Courtès
The file would not be included in the tarball produced by "make dist" because its name was too long. * gnu/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch: Rename to... * gnu/packages/patches/python2-pygobject-2-deprecation.patch: ... this. * gnu/packages/glib.scm (python2-pygobject-2)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise.
2020-11-08gnu: gdb@9.2: Restore 'gdb-hurd.patch'.Marius Bakke
This patch got lost when e33c4286ebcc0dcc79985a32c6c2d5ad623d1fbe was merged (commit 32787d652460871a79f99b63230f92759e2e0de2), but was still required on the 'staging' branch. * gnu/packages/patches/gdb-hurd.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-11-07Merge branch 'master' into stagingMarius Bakke
Conflicts: gnu/local.mk gnu/packages/gdb.scm gnu/packages/lisp-xyz.scm gnu/packages/web-browsers.scm
2020-11-07gnu: libffi: Fix building on powerpc.Efraim Flashner
* gnu/packages/libffi.scm (libffi)[inputs]: New field. [arguments]: Add 'apply-patch' phase when targeting PowerPC. * gnu/packages/patches/libffi-3.3-powerpc-fixes.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-11-05gnu: Add yggdrasil.raingloom
* gnu/packages/networking.scm (yggdrasil): New variable. * gnu/packages/patches/yggdrasil-extra-config.patch: New file. * gnu/local.mk (dist_PATCH_DATA): Add it. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-11-05gnu: ungoogled-chromium: Add search path for installed extensions.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-extension-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%guix-patches): New variable. (ungoogled-chromium-snippet): Apply %GUIX-PATCHES. (ungoogled-chromium)[arguments]: Don't hard-code extensions directory. [native-search-paths]: New field.
2020-11-04gnu: Add bsd-games.Vitaliy Shatrov
* gnu/packages/games.scm (bsd-games): New variable. New patches, taken from Arch and Debian: * gnu/packages/patches/bsd-games-2.17-64bit.patch * gnu/packages/patches/bsd-games-bad-ntohl-cast.patch * gnu/packages/patches/bsd-games-gamescreen.h.patch * gnu/packages/patches/bsd-games-getline.patch * gnu/packages/patches/bsd-games-null-check.patch * gnu/packages/patches/bsd-games-number.c-and-test.patch * gnu/packages/patches/bsd-games-prevent-name-collisions.patch * gnu/packages/patches/bsd-games-stdio.h.patch New patches with our customizations (configure-config built after Arch's): * gnu/packages/patches/bsd-games-add-configure-config.patch * gnu/packages/patches/bsd-games-add-wrapper.patch * gnu/packages/patches/bsd-games-dont-install-empty-files.patch Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-10-31gnu: sbcl-geco: Fix build.Guillaume Le Vaillant
* gnu/packages/patches/sbcl-geco-fix-organism-class.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp-xyz.scm (sbcl-geco)[source]: Use it.
2020-10-28gnu: icedtea-8: Fix build on aarch64-linux.Simon South
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Remove obsolete, architecture-dependent patch to "hotspot-drop". * gnu/packages/patches/icedtea-7-hotspot-gcc-segfault-workaround.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-10-28gnu: icedtea-7: Fix build on aarch64-linux.Simon South
* gnu/packages/java.scm (icedtea-7)[native-inputs]: Remove obsolete, architecture-dependent patch to "hotspot-drop"; replace with patch to fix build on aarch64-linux. * gnu/packages/patches/icedtea-7-hotspot-aarch64-use-c++98.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-10-28gnu: icedtea-6: Fix build on aarch64-linux.Simon South
* gnu/packages/java.scm (icedtea-6)[source]: Add patch. * gnu/packages/patches/icedtea-6-extend-hotspot-aarch64-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-10-28gnu: icedtea-6: Remove obsolete, architecture-dependent patch.Simon South
* gnu/packages/java.scm (icedtea-6)[arguments]<#:phases>: Remove special handling of "hotspot-src" input during "unpack" phase. [native-inputs]: Remove patch to "hotspot-src". * gnu/packages/patches/icedtea-6-hotspot-gcc-segfault-workaround.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-10-27gnu: kpackage: Fix build errors in dependent packages.Hartmut Goebel
Fix build errors in dependent packages if PREFIX is different from ECM's PREFIX - which is the case in Guix. See <https://bugs.kde.org/424483> for details. * gnu/packages/patches/plasma-framework-fix-KF5PackageMacros.cmake.patch: New file. * gnu/local.mk (dist_patch_DATA) Add it. * packages/kde-frameworks.scm (package)[source]: Use this patch.
2020-10-27gnu: plasma-framework: Fix build errors in dependent packages.Hartmut Goebel
Fix build errors in dependent packages if PREFIX is different from ECM's PREFIX - which is the case in Guix. See <https://bugs.kde.org/424483> for details. * gnu/packages/patches/plasma-framework-fix-KF5PlasmaMacros.cmake.patch: New file. * gnu/local.mk (dist_patch_DATA) Add it. * packages/kde-frameworks.scm (plasma-framework)[source]: Use this patch.
2020-10-26gnu: Remove unused patch.Ludovic Courtès
This patch was unused since commit e4070d404d5daa71fcc83a7fecc9b58570d280c2. * gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-10-26gnu: python-robotframework: Shorten patch file name.Ludovic Courtès
* gnu/packages/patches/python-robotframework-honor-source-date-epoch.patch: Rename to... * gnu/packages/patches/python-robotframework-source-date-epoch.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-robotframework)[source]: Likewise.
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