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2021-03-06gnu: ytnef: Fix CVE-2021-3403 and CVE-2021-3404....* gnu/packages/patches/ytnef-CVE-2021-3403.patch, gnu/packages/patches/ytnef-CVE-2021-3404.patch: New patches. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/mail.scm (ytnef): Apply them. Léo Le Bouter
2021-03-06gnu: hplip: Update to 3.21.2....* gnu/packages/cups.scm (hplip): Update to 3.21.2. * gnu/packages/patches/hplip-remove-imageprocessor.patch: Adapt. Tobias Geerinckx-Rice
2021-03-05gnu: cgal: Update to 5.2 [security fixes]....* gnu/packages/patches/cgal-security-pr-5371.patch: New patch. Downloaded from <https://patch-diff.githubusercontent.com/raw/CGAL/cgal/pull/5371.patch>, with hunks on files matching pattern "*Convex_decomposition_3*" removed because they don't exist in cgal's released sources. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/graphics.scm (cgal): Update to 5.2. [source]: Apply patch. Léo Le Bouter
2021-03-04gnu: mupdf: Fix CVE-2021-3407....* gnu/packages/pdf.scm (mupdf)[source]: Add patch. * gnu/packages/patches/mupdf-CVE-2021-3407.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Kei Kebreau
2021-03-03gnu: openssh: Update to 8.5p1....* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Also unregister it. * gnu/packages/ssh.scm (openssh): Update to 8.5p1. Léo Le Bouter
2021-03-02gnu: Python 2: Fix CVE-2021-3177....* gnu/packages/patches/python-2.7-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-2.7)[replacement]: New field. (python-2.7/fixed): New variable. Leo Famulari
2021-03-02gnu: python-matplotlib: Fix running under Wayland with GTK3....* gnu/packages/python-xyz.scm (python-matplotlib)[source]: Add patch. * gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-03-01gnu: openscad: Update to 2021.01 [maybe fixes TALOS-2020-1222, TALOS-2020-1223]....TALOS-2020-1222 has yet to be disclosed and has no known CVE number. TALOS-2020-1223 has CVE-2020-28599 assigned. * gnu/packages/engineering.scm (openscad): Update to 2021.01. [patches]: Remove. Boost 1.72 is supported now upstream. [arguments]: In replacement 'check phase, disable some tests requiring experimental "lazy-union" feature. Also disable PDF-related tests requiring ghostscript and failing either way. * gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/patches/openscad-parser-boost-1.72.patch: Ditto. Léo Le Bouter
2021-02-28gnu: qemu: Fix CVE-2021-20203....* gnu/packages/patches/qemu-CVE-2021-20203.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/virtualization.scm (qemu): Apply it. Léo Le Bouter
2021-02-28gnu: retroarch: Update to 1.9.0....* gnu/packages/emulators.scm (retroarch): Update to 1.9.0. [source]: Remove 'retroarch-disable-online-updater.patch' and snippet. Add 'retroarch-LIBRETRO_DIRECTORY.patch'. [native-search-paths]: New field. * gnu/packages/patches/retroarch-disable-online-updater.patch: Remove file. * gnu/packages/patches/retroarch-LIBRETRO_DIRECTORY: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. 宋文武
2021-02-28gnu: wpa-supplicant, hostapd: Fix CVE-2021-27803....See <https://w1.fi/security/2021-1/wpa_supplicant-p2p-provision-discovery-processing-vulnerability.txt>. * gnu/packages/patches/wpa-supplicant-CVE-2021-27803.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/admin.scm (wpa-supplicant-minimal, hostapd): Apply it. Léo Le Bouter
2021-02-25gnu: Python 3.9: Update to 3.9.2....* gnu/packages/python.scm (python-3.9): Update to 3.9.2. [source]: Remove obsolete patch. * gnu/packages/patches/python-3.9-CVE-2021-3177.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name> Greg Hogan
2021-02-24gnu: http-server: Fix build on i686-linux....* gnu/packages/patches/http-parser-fix-assertion-on-armhf.patch: Remove it. * gnu/local.mk (dist_patch_DATA): Update it. * gnu/packages/web.scm (http-parser)[source]: Remove a test assertion failing on i686-linux. [arguments]: Remove the "assertion.patch" that is merged upstream. [native-inputs]: Ditto. [synopsis]: Wrap it. Mathieu Othacehe
2021-02-24gnu: http-parser: Update to 2.9.4-1.ec8b5ee [fixes CVE-2020-8287]....Fixes CVE-2020-8287. * gnu/packages/web.scm (http-parser): Update to 2.9.4-1.ec8b5ee. [source]: Add patch to mitigate CVE. * gnu/packages/patches/patches/http-parser-CVE-2020-8287.patch: New file. * gnu/local.mk [dist_patch_DATA]: New patch. Jelle Licht
2021-02-23gnu: Python: Fix CVE-2021-3177....* gnu/packages/patches/python-3.8-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-3.8)[replacement]: New field. (python-3.8/fixed): New variable. Leo Famulari
2021-02-23gnu: ruby-rack: Update to 2.2.3....* gnu/packages/ruby.scm (ruby-rack): Update to 2.2.3. [source]: Remove patch. Add snippet. [arguments]: Adjust custom 'fix-tests phase. Remove 'make-files-writable phase. [native-inputs]: Remove ruby-minitest-sprint, which. Add ruby-minitest-global-expectations. [propagated-inputs]: Remove ruby-concurrent. * gnu/packages/patches/ruby-rack-ignore-failing-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-02-23gnu: ruby-tzinfo-data: Update to 1.2021.1....* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2021.1. [source]: Remove patch. [arguments]: Add custom 'patch-source, 'pre-check phases. [native-inputs]: Add IANA timezone data files. * gnu/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-02-21gnu: exiv2-0.26: Remove variable....* gnu/packages/image.scm (exiv2-0.26): Remove variable. * gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch: * gnu/packages/patches/exiv2-CVE-2017-14860.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Apply removal. Nicolas Goaziou
2021-02-21gnu: screen: Patch CVE-2021-26937....* gnu/packages/screen.scm (screen)[source]: Add patch. * gnu/packages/patches/screen-CVE-2021-26937.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2021-02-20gnu: lrzip: Update to 0.640....* gnu/packages/compression.scm (lrzip): Update to 0.640. [source]: Remove obsolete patch 'lrzip-CVE-2017-8842.patch'. [inputs]: Add lz4. * gnu/packages/patches/lrzip-CVE-2017-8842.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name> Vincent Legoll
2021-02-19gnu: Python 3.9: Fix CVE-2021-3177....* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-3.9)[source]: Use it. Leo Famulari
2021-02-17gnu: ruby-rubocop: Update to 1.10.0....* gnu/packages/ruby.scm (ruby-rubocop): Update to 1.10.0. [source]: Remove patch. [arguments]: Remove custom 'remove-problematic-tests, 'disable-bundler, 'replace-git-ls-files phases. Add custom 'check phase. [native-inputs]: Add ruby-memory-profiler, ruby-rake, ruby-rubocop-minimal, ruby-rubocop-performance-minimal, ruby-rubocop-rspec-minimal, ruby-simplecov, ruby-stackprof. Replace ruby-webmock-2 with ruby-webmock. (ruby-rubocop-minimal, ruby-rubocop-performance-minimal, ruby-rubocop-rspec-minimal): New variables. * gnu/packages/patches/ruby-rubocop-break-dependency-cycle.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-02-12gnu: diffoscope: Update to use python-magic....Fixes: https://salsa.debian.org/reproducible-builds/diffoscope/-/issues/238 * gnu/packages/patches/diffoscope-revert-to-magic-open.patch: Remove file. * gnu/local.mk [dist_patch_DATA]: Update. * gnu/packages/diffoscope.scm (diffoscope)[source]: Remove patch. [inputs]: Remove python-file. Vagrant Cascadian
2021-02-11gnu: diffoscope: Update to 166....* gnu/packages/diffoscope.scm (diffoscope): Update to 166. [source]: Add patch to use magic.open compatibility interface. * gnu/packages/patches/diffoscope-revert-to-magic-open.patch: New file. * gnu/local.mk [dist_patch_DATA]: New patch. Vagrant Cascadian
2021-02-10Revert "gnu: inetutils: Update to 2.0."...This reverts commit 55050e54a987cd99b8477da1a4993e83adcca129, which rebuilds xdg-utils and hence a good part of the world (1838 packages). Reported by mroh in #guix. Tobias Geerinckx-Rice
2021-02-09gnu: inetutils: Update to 2.0....* gnu/packages/admin.scm (inetutils): Update to 2.0. [source](patches): Remove. * gnu/packages/patches/inetutils-hurd.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
2021-02-09gnu: vorbis-tools: Update to 1.4.2....* gnu/packages/xiph.scm (vorbis-tools): Update to 1.4.2. (source): Remove obsolete patches. * gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch, gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch, gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Signed-off-by: Leo Famulari <leo@famulari.name> Vincent Legoll
2021-02-09gnu: qpdfview: Fix qt-5.15 compatibility....* gnu/packages/pdf.scm (qpdfview)[source]: Add patch to include a missing header. * gnu/packages/patches/qpdfview-qt515-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Timotej Lazar
2021-02-08gnu: emacs-undohist-el: Update to 0.2.1....* gnu/packages/emacs-xyz.scm (emacs-undohist-el): Update to 0.2.1. [origin]: Remove unnecessary patch. * gnu/packages/patches/emacs-undohist-ignored.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Apply deletion. Nicolas Goaziou
2021-02-08gnu: hdf5: Update to 1.8.22....Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and CVE-2018-17435 * gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22. * gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed patch. * gnu/local/mk (dist_patch_DATA): Remove it. Eric Bavier
2021-02-08gnu: clementine: Update to 1.4.0rc1-450....* gnu/packages/music.scm (clementine): Update to 1.4.0rc1-450. [source]: Adapt snippet to list bundled directories to keep rather than ones to delete. Unbundled gmock. Remove patches no longer needed. [arguments]: Set -DUSE_SYSTEM_TAGLIB=TRUE. [native-inputs]: Add googletest. [inputs]: Remove openssl. [license]: Remove gmock license. * gnu/packages/patches/clementine-fix-sqlite.patch: Remove. * gnu/packages/patches/clementine-remove-crypto++-dependency.patch: Remvoe * gnu/packages/patches/clementine-use-openssl.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Pierre Langlois
2021-02-07gnu: python2-renpy: Update to 7.4.0....* gnu/packages/game-development.scm (python2-renpy): Update to 7.4.0. (inputs): Move python2-pygame... (propagated-inputs): ... to here. Add python2-future. (#:phases)[install]: Infer python version from input. * gnu/packages/patches/renpy-use-system-fribidi.patch: Update to renpy 7.4.0. python2-renpy: propagate python inputs Leo Prikler
2021-02-07gnu: owncloud-client: Update to 2.7.5.3180....* gnu/packages/sync.scm (owncloud-client): Update to 2.7.5.3180. [native-inputs]: Add cmake-extra-modules. [arguments]: Fix `delete-failing-tests' phase. [source]: Remove no longer needed snippet. * gnu/packages/patches/owncloud-disable-updatecheck.patch: Update patch. Julien Lepiller
2021-02-02gnu: Add python-mediafile....* gnu/packages/music.scm (python-mediafile): New variable. * gnu/packages/patches/python-mediafile-wavpack.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus
2021-02-02gnu: obs: Use an environment variable for plugins location....* gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/video.scm (obs): Use it. * gnu/packages/patches/obs-modules-location.patch: Patch it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alexey Abramov
2021-02-01Merge branch 'staging'Leo Famulari
2021-02-01gnu: vcflib: Fix generated pkg-config file....* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom generated pkg-config file, link with all needed libraries and fix linker library. * gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly. Efraim Flashner
2021-01-31gnu: Add c++-gsl....* gnu/packages/cpp.scm (c++-gsl): New variable. * gnu/packages/patches/c++-gsl-find-system-gtest.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Raghav Gururajan
2021-01-31gnu: gst-plugins-good: Fix a test failure on 32-bit systems....* gnu/packages/patches/gst-plugins-good-fix-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use it. Leo Famulari
2021-01-29gnu: Remove avogadro....This package fails to build and has been superseded by avogadro2. * gnu/packages/chemistry.scm (avogadro): Remove variable. * gnu/packages/patches/avogadro-boost148.patch, gnu/packages/patches/avogadro-eigen3-update.patch, gnu/packages/patches/avogadro-python-eigen-lib.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Leo Famulari
2021-01-27gnu: pinentry-tty: Update to 1.1.1....* gnu/packages/gnupg.scm (pinentry-tty): Update to 1.1.1. (pinentry-efl)[source]: Remove patch. * gnu/packages/patches/pinentry-efl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-01-27gnu: VLC: Remove obsolete patch....* gnu/packages/patches/vlc-qt-5.15.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (vlc)[source]: Remove patch. Leo Famulari
2021-01-26gnu: icecat: Update to 78.7.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2021-23953, CVE-2021-23954, CVE-2020-26976, CVE-2021-23960, and CVE-2021-23964. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version. Mark H Weaver
2021-01-25gnu: Mutt: Update to 2.0.5....* gnu/packages/patches/mutt-CVE-2021-3181.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/mail.scm (mutt): Update to 2.0.5. [source]: Remove obsolete patch. Leo Famulari
2021-01-25Merge branch 'master' into stagingLeo Famulari
2021-01-20gnu: Mutt: Fix CVE-2021-3181....* gnu/packages/patches/mutt-CVE-2021-3181.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mail.scm (mutt)[source]: Use it. Leo Famulari
2021-01-20gnu: r-httpuv: Update to 1.5.5....* gnu/packages/cran.scm (r-httpuv): Update to 1.5.5. [source]: Update patch name and remove unused modules. * gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: Rename this file... * gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: ...to this. * gnu/local.mk (dist_patch_DATA): Rename it. Ricardo Wurmus
2021-01-20gnu: idris: Update to 1.3.3....* gnu/packages/patches/idris-disable-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/idris.scm (idris): Update to 1.3.3. [source]: Use the patch. [native-inputs]: Add ghc-cheapskate. [arguments]: Adjust cheapskate version bounds. Make auxiliary test script executable. Eric Bavier
2021-01-19gnu: freebayes: Don't include vcflib sources....* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Remove vcflib-source, intervaltree-source. Move vcflib ... [inputs]: ... to here. [arguments]: Adjust 'patch-source and 'unpack-submodule-sources for changes in vendored code. * gnu/packages/patches/freebayes-devendor-deps.patch: Update patch. Efraim Flashner
2021-01-18gnu: mesa: Skip another test....* gnu/packages/patches/mesa-skip-disk-cache-test.patch: Rename to ... * gnu/packages/patches/mesa-skip-tests.patch: ... new file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gl.scm (mesa)[source]: Adjust accordingly. Leo Famulari
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