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2022-03-29gnu: pigx-sars-cov2-ww: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5. [source]: Remove patch. [arguments]: Disable tests. * gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-03-29gnu: pigx-rnaseq: Update to 0.0.20....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20. [source]: Remove patch. [inputs]: Add megadepth. * gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-03-28gnu: zig: Remove unneeded patch....* gnu/packages/zig.scm (zig)[source]: Remove one patch. * gnu/packages/patches/zig-disable-libc-note-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2022-03-24gnu: tremc: Update to 0.9.3....* gnu/packages/bittorrent.scm (tremc): Update to 0.9.3. [source]: Remove obsolete patch. * gnu/packages/patches/tremc-fix-decodestring.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2022-03-24gnu: python-robotframework: Update to 5.0 and run acceptance tests....* gnu/packages/python-xyz.scm (python-robotframework): Update to 5.0. [patches]: Remove python-robotframework-ug2html.patch. Add python-robotframework-atest.patch and update python-robotframework-source-date-epoch.patch. [phases]: Use gexps. {delete-problematic-tests}: New phase. {check}: Also run `atest', the acceptance test suite. [native-inputs]: Use new style. Add python-lxml, python-pyyaml, python-xmlschema, scrot and xvfb-run. * gnu/packages/patches/python-robotframework-atest.patch: New file. * gnu/packages/patches/python-robotframework-source-date-epoch.patch: Update patch. * gnu/packages/patches/python-robotframework-ug2html.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Maxim Cournoyer
2022-03-21gnu: openboardview: Unbundle imgui....* gnu/packages/patches/openboardview-use-system-imgui.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/electronics.scm (openboardview)[source]: Delete "imgui" subdirectory from snippet and apply patch. [inputs]{imgui}: New input. Maxim Cournoyer
2022-03-19gnu: python-mypy: Fix test errors on i686-linux....* gnu/packages/patches/python-mypy-12332.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-check.scm (python-mypy)[source]<origin>: Use patch "python-mypy-12332.patch" to avoid overflow issues resulting in test failures. Signed-off-by: Ludovic Courtès <ludo@gnu.org> itd
2022-03-16gnu: dunst: Update to 1.8.1....* gnu/packages/dunst.scm (dunst): Update to 1.8.1. * gnu/packages/patches/dunst-1.7.3-fix-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jai Vetrivelan
2022-03-15gnu: mariadb: Fix building for powerpc-linux....* gnu/packages/databases.scm (mariadb)[arguments]: Add custom phase for powerpc-linux to apply patch. [native-inputs]: When building for powerpc-linux add patch and a patch file. * gnu/packages/patches/mariadb-link-libatomic.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-03-11gnu: transfig: Fix "multiple definition" errors with GCC 10+....* gnu/packages/patches/transfig-gcc10-fno-common.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xfig.scm (transfig)[source]<origin>: Use patch "transfig-gcc10-fno-common.patch" to avoid "multiple definition" errors with GCC 10+ and "-f-no-common". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ivan Vilata i Balaguer
2022-03-11gnu: sdcc: Update to 4.2.0....* gnu/packages/embedded.scm (sdcc): Update to 4.2.0. [description]: Update to mention the newly supported MOS 6502. * gnu/packages/patches/sdcc-disable-non-free-code.patch: Update to match new version. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Simon South
2022-03-10gnu: python-robotframework: Do not embed a timestamp in the user guide....* gnu/packages/patches/python-robotframework-source-date-epoch.patch: Update patch to cover for the user guide. Maxim Cournoyer
2022-03-09gnu: python-robotframework: Fully build the documentation....* gnu/packages/patches/python-robotframework-ug2html.patch: New patch. * gnu/local.mk: Register it. * gnu/packages/python-xyz.scm (python-robotframework): Apply patch. [modules]: New argument. [phases]{build-and-install-doc}: Modify to build the full HTML documentation, including the user guide. [native-inputs]: Add python-pygments. Maxim Cournoyer
2022-03-09gnu: python-robotframework-sshlibrary: Patch for RobotFramework 5 compatibility....* gnu/packages/patches/python-robotframework-sshlibrary-rf5-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/python-xyz.scm (python-robotframework-sshlibrary): Apply it. Maxim Cournoyer
2022-03-04gnu: racket: Use Git origins for Racket packages....* gnu/packages/patches/racket-gui-tethered-launcher-backport.patch: Adjust path. * gnu/packages/racket.scm (racket-packages-origin) (simple-racket-origin): New procedures. (extend-layer): Rename to ... (configure-layer.rkt): ... this variable. Tweak command-line arguments. Adapt to 'config-tethered-apps-dir'. (racket): Stop inheriting from 'racket-minimal'. [version]: Use '%racket-version'. [source]: Stop using bundled tarball. [inputs]: Remove labels. Add 'racket-minimal' and package sources. [native-inputs]: Reduce to racket-minimal. Untested, as cross-compilation doesn't work yet. [arguments]: Rewrite to use G-expressions, package sources from 'inputs', an explicit 'install' phase, and the revised 'configure-layer.rkt'. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Philip McGrath
2022-03-04gnu: racket: Update to 8.4....* gnu/packages/patches/racket-enable-scheme-backport.patch, gnu/packages/patches/racket-gui-tethered-launcher-backport.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/racket.scm (%racket-version, %racket-commit) (%racket-origin): New variables. [patches]: Add "racket-enable-scheme-backport.patch". (racket-minimal): Update to 8.4. [version]: Use '%racket-version'. [source]: Use '%racket-origin'. [inputs]: Add 'ncurses'. Remove 'zlib:static' and 'lz4:static'. (racket-minimal-bc-3m)[inputs]: Adjust accordingly. (racket-bootstrap-chez-bootfiles)[version]: Use Chez Scheme's '(scheme-fork-version-number)'. (racket)[version]: Use '%racket-version'. [native-inputs]: Use '%racket-origin'. [source]: Update to 8.4. <patches>: Use "racket-gui-tethered-launcher-backport.patch". <snippet>: Remove "srfi-doc-nonfree". Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Philip McGrath
2022-03-02gnu: rust-pinot-0.1: Update to 0.1.4....* gnu/packages/crates-io.scm (rust-pinot-0.1): Update to 0.1.4. * gnu/packages/patches/rust-pinot-0.1-implement-math-table.patch: Remove file. * gnu/local.mk: Remove reference to the file above. Nicolas Goaziou
2022-03-01gnu: tectonic: Update to 0.8.1....* gnu/packages/rust-apps.scm (tectonic): Update to 0.8.1. [inputs]: Add FREETYPE, GRAPHITE2, ICU4C, LIBPNG. * gnu/packages/crates-io.scm (rust-pinot-0.1)[origin]<patches>: Add patch necessary for Tectonic. (rust-tectonic-docmodel-0.1): Update to 0.1.2. (rust-tectonic-engine-spx2html-0.1): New variable. (rust-tectonic-engine-xetex-0.2): New variable. (rust-tectonic-engine-xetex-0.1): Remove variable. (rust-tectonic-io-base-0.4): New variable. (rust-tectonic-io-base-0.3): Inherit from above. (rust-tectonic-xdv-0.2): New variable. (rust-tectonic-xdv-0.1): Remove variable. * gnu/packages/patches/rust-pinot-0.1-implement-math-table.patch: New file. * gnu/local.mk (dist_patch_DATA): Register new file. Nicolas Goaziou
2022-03-01gnu: guile-ssh: Update to 0.15.1....* gnu/packages/patches/guile-ssh-fix-test-suite.patch, gnu/packages/patches/guile-ssh-read-error.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (guile-ssh): Update to 0.15.1, and remove those patches. (guile2.2-ssh)[source]: Remove. (guile2.0-ssh): Remove. Co-authored-by: poptsov.artyom@gmail.com (Artyom V. Poptsov) Ludovic Courtès
2022-03-01gnu: guile@3.0.8: Get correct type sizes when cross-compiling....This works around <https://issues.guix.gnu.org/54198>, whereby cross-compilation from (say) x86_64-linux to i586-pc-gnu would produce a broken Guile that crashes at startup. * gnu/packages/patches/guile-cross-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-3.0-latest)[source]: Use it. Ludovic Courtès
2022-02-27gnu: screen: Update to 4.9.0....* gnu/packages/screen.scm (screen): Update to 4.9.0. [source]: Remove one patch. [native-inputs]: Remove input labels. Add autoconf, automake. * gnu/packages/patches/screen-CVE-2021-26937.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2022-02-24gnu: evilwm: Update to 1.3.1....* gnu/packages/wm.scm (evilwm): Update to 1.3.1. [source]: Remove patch. * gnu/packages/patches/evilwm-lost-focus-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Eric Bavier
2022-02-24gnu: webkitgtk: Adjust BubbleWrap wrapper....This revisits <https://issues.guix.gnu.org/40837> with a fix that doesn't require to have PULSE_CLIENTCONFIG point to an absolute store location, which will allow us to revert to have PULSE_CLIENTCONFIG point to a fixed location under /etc. This would alleviate the need to reboot to have changes to the PulseAudio configuration effected. * gnu/packages/patches/webkitgtk-share-store.patch: Delete file. * gnu/packages/patches/webkitgtk-bubblewrap-paths.patch: Add file. * gnu/packages/patches/webkitgtk-canonicalize-paths.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Update patches list. * gnu/packages/webkit.scm (webkitgtk)[patches]: Adjust accordingly. Maxim Cournoyer
2022-02-20gnu: postgresql-13: Fix building on riscv64-linux....* gnu/packages/databases.scm (postgresql-13)[arguments]: Add phase when buidling for riscv64-linux to apply a patch. [native-inputs]: When building for riscv64-linux add patch and patch file. * gnu/packages/patches/postgresql-riscv-spinlocks.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-02-19gnu: efivar: Update to 38....* gnu/packages/linux.scm (efivar): Update to 38. [source](snippet, modules, patches): Remove. [native-inputs]: Add MANDOC. (efibootmgr)[source](modules, snippet): New fields. * gnu/packages/patches/efivar-gcc-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2022-02-19gnu: calibre: Update to 5.36.0....* gnu/packages/ebook.scm (calibre): Update to 5.36.0. Remove no longer needed zeroconf patch. [inputs]: Remove python-dbus, python-dukpy, python-pycryptodome. Add python-jeepney, libstemmer. * gnu/packages/patches/calibre-fix-zeroconf.patch: Delete patch. * gnu/local.mk: Remove reference to patch. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Brendan Tildesley
2022-02-18gnu: upower: Update to 0.99.15....Upstream has removed the Autotools build system and now only supports Meson, so the build system has been changed to 'meson-build-system'. The patch 'power-builddir.patch' has to be replaced to adjust to the switch to Meson. This has been done by adding an origin snippet. The origin snippet has been simplified, and for consistency, it has been made a gexp. Some dependencies were Autotools-only and could be removed. * gnu/packages/gnome.scm (upower): Update to 0.99.15. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxime Devos
2022-02-16gnu: Remove leftover patch files....These patches aren't used anywhere in Guix and we forgot to remove them. * gnu/packages/patches/bash-reproducible-linux-pgrp-pipe.patch, gnu/packages/patches/ghc-monad-par-fix-tests.patch, gnu/packages/patches/glibc-CVE-2018-11236.patch, gnu/packages/patches/glibc-CVE-2018-11237.patch, gnu/packages/patches/glibc-hurd-magic-pid.patch, gnu/packages/patches/grocsvs-dont-use-admiral.patch, gnu/packages/patches/hydra-disable-darcs-test.patch, gnu/packages/patches/inkscape-poppler-0.76.patch, gnu/packages/patches/libvirt-create-machine-cgroup.patch, gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch, gnu/packages/patches/marble-qt-add-qt-headers.patch, gnu/packages/patches/maven-enforcer-api-fix-old-dependencies.patch, gnu/packages/patches/mescc-tools-boot.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt1.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt2.patch, gnu/packages/patches/nettle-3.5-check-_pkcs1_sec_decrypt-msg-len.patch, gnu/packages/patches/ocaml-Add-a-.file-directive.patch, gnu/packages/patches/ocaml-CVE-2015-8869.patch, gnu/packages/patches/ocaml-bitstring-fix-configure.patch, gnu/packages/patches/ocaml-enable-ocamldoc-reproducibility.patch, gnu/packages/patches/openbabel-fix-crash-on-nwchem-output.patch, gnu/packages/patches/openjdk-14-builtins.patch, gnu/packages/patches/openssl-c-rehash-in.patch, gnu/packages/patches/openssl-runpath.patch, gnu/packages/patches/passwordsafe-meson-remove-extra-argument.patch, gnu/packages/patches/patchutils-test-perms.patch, gnu/packages/patches/python-CVE-2018-14647.patch, gnu/packages/patches/python-CVE-2020-26116.patch, gnu/packages/patches/python-axolotl-AES-fix.patch, gnu/packages/patches/python-babel-fix-parse-future-test.patch, gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch, gnu/packages/patches/python-pytest-asyncio-python-3.8.patch, gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch, gnu/packages/patches/qt4-ldflags.patch, gnu/packages/patches/rust-coresimd-doctest.patch, gnu/packages/patches/streamlink-update-test.patch, gnu/packages/patches/tcc-boot-0.9.27.patch, gnu/packages/patches/vtk-8-fix-freetypetools-build-failure.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Leo Famulari
2022-02-14gnu: nhc98: Build with the current tool chain....* gnu/packages/patches/nhc98-c-update.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/haskell.scm (nhc98)[source]: Use it. [arguments]: Remove #:implicit-inputs?. [native-inputs]: Remove. Ludovic Courtès
2022-02-14gnu: freecad: Update to 0.19.3-0.09a05a9....* gnu/packages/engineering.scm (freecad): Update to 0.19.3-0.09a05a9. [source]: Remove patches. [arguments]: Remove unneeded variables for pyside2 and shiboken2 from 'configure-flags'. * gnu/packages/patches/freecad-boost-serialization.patch: Remove file. * gnu/packages/patches/freecad-vtk9.patch: Remove file. * gnu/locak.mk (dist_patch_DATA): Remove "freecad-boost-serialization.patch" and "freecad-vtk9.patch". Guillaume Le Vaillant
2022-02-11gnu: ungoogled-chromium: Update to 98.0.4758.80-1....* gnu/packages/patches/ungoogled-chromium-accelerated-video-decode.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%chromium-version): Set to 98.0.4758.80. (arch-patch, %arch-patches): Remove variables. (%guix-patches): Remove accelerated video decode patch which no longer works. (%ungoogled-origin): Update hash. (ungoogled-chromium-snippet): Don't apply %ARCH-PATCHES. (ungoogled-chromium)[source]: Update hash. [arguments]: Remove obsolete #:configure-flags. Adjust substitutions. Marius Bakke
2022-02-11gnu: crawl: Update to 0.28.0....* gnu/packages/games.scm (crawl): Update to 0.28.0. [inputs]: Add BASH-MINIMAL. * gnu/packages/patches/crawl-upgrade-saves.patch: Update for 0.28. Nicolas Goaziou
2022-02-11gnu: lokke: Build with Guile 3.0.8....* gnu/packages/guile.scm (guile-3.0-for-lokke): Remove. * gnu/packages/patches/guile-3.0.7-psyntax-nil.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/guile-xyz.scm (lokke)[native-inputs]: Replace GUILE-3.0-FOR-LOKKE by GUILE-3.0-LATEST. Ludovic Courtès
2022-02-11gnu: Add python-pytorch-for-r-torch....* gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): New variable. Ricardo Wurmus
2022-02-11gnu: coq: Update to 8.15.0....* gnu/packages/coq.scm (coq): Update to 8.15.0. (coq-equations): Update to 1.3-8.15. * gnu/packages/patches/coq-fix-envvars.patch: Adapt to new version. Julien Lepiller
2022-02-09gnu: Add openboardview....* gnu/packages/electronics.scm (openboardview): New variable. * gnu/packages/patches/openboardview-use-system-utf8.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Maxim Cournoyer
2022-02-08gnu: Add bloomberg-bde....* gnu/packages/cpp.scm (bloomberg-bde): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-02-08gnu: Add bloomberg-bde-tools....* gnu/packages/cpp.scm (bloomberg-bde-tools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-02-07gnu: webrtc-audio-processing: Fix building on powerpc architectures....* gnu/packages/audio.scm (webrtc-audio-processing)[arguments]: Adjust custom arguments list to also fix building on all powerpc architectures. [native-inputs]: Add patch, local-file on riscv64-linux and powerpc architectures. * gnu/packages/patches/webrtc-audio-processing-big-endian.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Efraim Flashner
2022-02-07gnu: Add ghc-4....* gnu/packages/patches/ghc-4.patch: New file * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/haskell.scm (ghc-4): New variable. Ricardo Wurmus
2022-02-07gnu: Add perl-5.14....* gnu/packages/patches/perl-5.14-autosplit-default-time.patch, gnu/packages/patches/perl-5.14-module-pluggable-search.patch, gnu/packages/patches/perl-5.14-no-sys-dirs.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/perl.scm (perl-5.14): New variable. Ricardo Wurmus
2022-02-06gnu: ocaml-qcheck: Update to 0.18.1....* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.18.1. * gnu/packages/patches/ocaml-qcheck-fix-test-whitespace.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Julien Lepiller
2022-02-05gnu: fenics-dolfin: Fix build....* gnu/packages/patches/fenics-dolfin-algorithm.patch, gnu/packages/patches/fenics-dolfin-boost.patch, gnu/packages/patches/fenics-dolfin-config-slepc.patch, gnu/packages/patches/fenics-dolfin-demo-init.patch: New patches. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/simulation.scm (fenics-dolfin)[source]: Use them. Eric Bavier
2022-02-05gnu: guile-fibers: Add (fibers io-wakeup)....This patch is required by gnunet-scheme. It has been submitted upstream at <https://github.com/wingo/fibers/pull/50>, but there has not been any response so far. * gnu/packages/patches/guile-fibers-wait-for-io-readiness.patch: New file. * gnu/packages/guile-xyz.scm (guile-fibers-1.1)[source]{patches}: Add it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxime Devos
2022-02-05gnu: tbb: Fix test on AArch64....* gnu/packages/patches/tbb-fix-test-on-aarch64.patch: New file. * gnu/local.mk: Add it. * gnu/packages/tbb.scm (tbb)[source]: Apply it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Simon South
2022-02-04gnu: audacity: Help Audacity find FFmpeg, for real....This is a followup to commit 6589966b976764e2a197e2bf2b847592dc8715a7, and fixes <https://issues.guix.gnu.org/53591>. * gnu/packages/patches/audacity-ffmpeg-fallback.patch: Fix typo. Leo Famulari
2022-02-04gnu: dunst: Fix crash on invalid pixbuf notification....* gnu/packages/patches/dunst-1.7.3-fix-crash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dunst.scm (dunst)[source]<#:patches>: Add it. Danny Milosavljevic
2022-02-04gnu: rcs: Update to 5.10.1....* gnu/packages/version-control.scm (rcs): Update to 5.10.1. [source]: Remove patch. * gnu/packages/patches/rcs-5.10.0-no-stdin.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2022-02-04gnu: mozjs-60: Add support for riscv64-linux....* gnu/packages/gnuzilla.scm (mozjs-60)[source]: Add patch. [arguments]: Add phase to update config scripts. [inputs]: Add config. * gnu/packages/patches/mozjs60-riscv64-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-02-01gnu: librecad: Fix build with boost 1.76....Fixes <https://issues.guix.gnu.org/53694>. * gnu/packages/patches/librecad-support-for-boost-1.76.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/engineering.scm (librecad)[source]: Use it. Guillaume Le Vaillant