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2017-07-29gnu: erlang: Fix man-pages search path of 'erl -man'....* gnu/packages/patches/erlang-man-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/erlang.scm (erlang)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Peter Mikkelsen
2017-07-28gnu: nss, nss-certs: Update to 3.32....This release includes minor code changes and many certificate updates: <https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes> * gnu/packages/certs.scm (nss-certs): Update to 3.32. * gnu/packages/gnuzilla.scm (nss): Update to 3.32. [arguments]: Prevent another test file from being installed. * gnu/packages/patches/nss-pkgconfig.patch: Adjust. Marius Bakke
2017-07-25gnu: evince: Update to 3.24.1....* gnu/packages/gnome.scm (evince): Update to 3.24.1. [source]: Remove obsolete patch. * gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Kei Kebreau
2017-07-25gnu: perl-dbd-mysql: Fix CVE-2017-10788....* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it. Kei Kebreau
2017-07-25gnu: Add guile2.0-bytestructures....* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-bytestructures)[source]: Use it. [arguments]: Unpack the source. [native-inputs]: New field. (guile2.0-bytestructures): New variable. Ludovic Courtès
2017-07-24gnu: gnome: Add deja-dup....* gnu/packages/gnome.scm (deja-dup): New variable. * gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file entry. Christopher Baines
2017-07-23gnu: metabat: Update to 2.11.1....* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1. [source]: Add patch to fix compilation. [arguments]: Adjust regular expressions modifying 'SConstruct'. * gnu/packages/patches/metabat-fix-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2017-07-23gnu: bcftools: Update to 1.5....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5. [origin]: Remove fix-makefile patch. [arguments]: Add configure flags, add LIBS make flag. Do not delete configure phase. * gnu/packages/patches/bcftools-fix-makefile.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ben Woodcroft
2017-07-23gnu: bcftools: Update to 1.4.1....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1. [arguments]: Move Makefile modifications from here ... [source]: ... to added patch. Adjust patch for update to 1.4. * gnu/packages/patches/bcftools-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Ben Woodcroft
2017-07-22gnu: quassel: Enable TLS....* gnu/packages/patches/quassel-fix-tls-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/irc.scm (quassel)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name> Ryan Moe
2017-07-22gnu: Remove python-fake-factory leftovers....This is a followup to c799eb2eb8b1a820147af96988eddaa9f752994b. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
2017-07-22gnu: python-pyopenssl: Update to 17.2.0....* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0. [native-inputs]: Add PYTHON-FLAKY. [source](patches): Remove. Marius Bakke
2017-07-20gnu: heimdal: Fix CVE-2017-{6594,11103}....* gnu/packages/patches/heimdal-CVE-2017-6594.patch, gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/kerberos.scm (heimdal)[source]: Use them. Alex Vong
2017-07-20gnu: Remove a left-over patch....This is a followup to commit 426b0b898f70a58133d80779980f163a5761686e. * gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2017-07-20gnu: Add libusb@0.1....* gnu/packages/libusb.scm (libusb-0.1): New variable. * gnu/packages/patches/libusb-0.1-disable-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Jonathan Brielmaier
2017-07-17gnu: qemu: Fix CVE-2017-11334....* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it. Leo Famulari
2017-07-17gnu: chicken: Fix CVE-2017-11343....* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (chicken)[source]: Use it. Leo Famulari
2017-07-17gnu: supertuxkart: Fix build on aarch64....* gnu/packages/games.scm (supertuxkart)[source]: Add patch. * gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2017-07-17gnu: Add sooperlooper....* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (sooperlooper): New variable. Ricardo Wurmus
2017-07-13gnu: evince: Fix CVE-2017-1000083....* gnu/packages/patches/evince-CVE-2017-1000083.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (evince)[source]: Use it. Marius Bakke
2017-07-12gnu: spice: Fix CVE-2017-7506....* gnu/packages/patches/spice-CVE-2017-7506.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/spice.scm (spice)[source]: Use it. Leo Famulari
2017-07-10gnu: hop: Update to 3.1.0-pre2....* gnu/packages/scheme.scm (hop): Update to 3.1.0-pre2. [source]: Remove unnecessary patch. [arguments]: Enable tests; disable parallel building; specify BIGLOO in make-flags. [inputs]: Add libgc, libunistring, libuv, pcre and sqlite. * gnu/local.mk (dist_patch_DATA): Remove unnecessary patch. * gnu/packages/patches/hop-linker-flags.patch: Delete file. Kei Kebreau
2017-07-10gnu: bigloo: Update to 4.3a....* gnu/packages/scheme.scm (bigloo): Update to 4.3a. [source]: Remove old patch. Add snippet. [arguments]: Adjust the build phases accordingly. [inputs]: Add libgc, libunistring, libuv, openssl, pcre and sqlite. Kei Kebreau
2017-07-10gnu: libtiff: Fix two integer overflows....* gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch, gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them. Leo Famulari
2017-07-10gnu: ncurses: Fix CVE-2017-10684 and CVE-2017-10685....* gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ncurses.scm (ncurses)[replacement]: New field. (ncurses/fixed): New variable. Leo Famulari
2017-07-10gnu: poppler: Fix null pointer dereferences....* gnu/packages/patches/poppler-fix-crash-with-broken-documents.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler/fixed)[source]: Add the patch. Mark H Weaver
2017-07-09gnu: dblatex: Use texlive-union....* gnu/packages/patches/dblatex-remove-multirow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/docbook.scm (dblatex)[source]: Use patch. [inputs]: Replace "texlive" with a texlive-union. Ricardo Wurmus
2017-07-09gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776....This is a followup to commit 95bbaa02aa63bc5eae36f686f1ed9915663aa4cf. See <https://bugs.gnu.org/27621> for more information. Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not possible to graft the newer version in place of the older one. This change leaves CVE-2017-9775 unfixed for now. * gnu/packages/patches/poppler-CVE-2017-9776.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler-0.56.0): Replace with ... (poppler/fixed): ... new variable. (poppler)[replacement]: Replaced with poppler/fixed. Leo Famulari
2017-07-08gnu: blast+: Update to 2.6.0....* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. [origin]: Remove bundled pcre. Add patch. [arguments]: Replace paths in run_with_lock.c. Configure with pcre. [inputs]: Add pcre, perl, python. * gnu/packages/patches/blast+-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2017-07-07gnu: python-pyopenssl: Fix test failure on 32-bit platforms....* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pyopenssl)[source]: Use it. Marius Bakke
2017-07-07gnu: libtiff: Fix CVE-2017-{9936,10688}....* gnu/packages/patches/libtiff-CVE-2017-9936.patch, gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name> Alex Vong
2017-07-06gnu: xorg-server: Fix CVE-2017-{10971,10972}....* gnu/packages/patches/xorg-server-CVE-2017-10971.patch, gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (xorg-server)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name> Kei Kebreau
2017-07-04gnu: gemma: Fix building on non-Intel architectures....* gnu/packages/patches/gemma-intel-compat.patch: New file. * gnu/packages/bioinformatics.scm (gemma)[source]: Add patch. [arguments]: Add NO_INTEL_COMPAT flag on non-Intel architectures. * gnu/local.mk (dist_patch_DATA): Register patch. Efraim Flashner
2017-07-04gnu: gajim: Update to 0.16.8....* gnu/packages/messaging.scm (gajim): Update to 0.16.8. [source]: Remove patch. * gnu/packages/patches/gajim-CVE-2016-10376.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Arun Isaac
2017-07-04gnu: python-pyopenssl: Update to 17.1.0....* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.1.0. [source]: Remove patch. [native-inputs]: Add PYTHON-PRETEND. [arguments]<#:phases>: Disable the network test here instead of via a patch. Also disable one new test. * gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
2017-07-03gnu: gcr: Correct patch....* gnu/packages/patches/gcr-disable-failing-tests.patch: Correct erroneously committed file. This is a follow-up to commit 85c774808fc13a0adc603784b2358a7c285c4822. Kei Kebreau
2017-07-03gnu: gcr: Enable working tests....* gnu/packages/patches/gcr-disable-failing-tests.patch, gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch: New files. * gnu/local.mk (dist_patch_DATA): Add patches. * gnu/packages/gnome.scm (gcr)[source]: Use patches. [arguments]: Enable tests. Kei Kebreau
2017-07-02gnu: Switch guile-cairo and dependents to Guile 2.2 again....Fixes <https://bugs.gnu.org/27551>. Reported by Leo Famulari <leo@famulari.name>. This reinstates the following commits: e3ddb1e83 * gnu: guile-cairo: Switch to Guile 2.2. ae5c6ef39 * gnu: guile-gnome: Update to 2.16.5. 0fd8013fc * gnu: guile-rsvg: Update to commit 05c6a2fd. 66b9183c4 * gnu: guile-lib: Switch to Guile 2.2. and adds the following changes: * gnu/bootloader/grub.scm (svg->png): Add 'package->derivation' call for GUILE-2.2. Pass #:guile-for-build to 'gexp->derivation'. * gnu/build/svg.scm (svg->png): Add 'em' and 'ex' to the 'let-values' form to account for all the values returned by 'rsvg-handle-get-dimensions', which Guile 2.2 does not truncate. Ludovic Courtès
2017-07-01Revert "gnu: guile-rsvg: Update to commit 05c6a2fd."...This reverts commit 0fd8013fcaafa9f53c7e304b2573c0314471df89. Leo Famulari
2017-06-30gnu: guile-rsvg: Update to commit 05c6a2fd....* gnu/packages/gtk.scm (guile-rsvg): Update to commit 05c6a2fd. [source](url): Change to gitlab.com. (snippet): Use @GUILE_EFFECTIVE_VERSION@ instead of "2.0". * gnu/packages/patches/guile-rsvg-pkgconfig.patch: Use "$GUILE_EFFECTIVE_VERSION" instead of "2.0". Ludovic Courtès
2017-06-29gnu: ansible: Apply experimental patch to deal with wrapping of ansible script....See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the rationale. * gnu/packages/patches/ansible-wrap-program-hack.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (ansible)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jelle Licht
2017-06-28gnu: screen: Update to 4.6.0....* gnu/packages/screen.scm (screen): Update to 4.6.0. [source]: Remove patch. * gnu/packages/patches/screen-fix-info-syntax-error.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2017-06-26gnu: Add quagga....* gnu/packages/networking.scm (quagga): New variable. * gnu/packages/patches/quagga-reproducible-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Gábor Boskovits
2017-06-25gnu: glibc: Fix replacement on i686....This is followup to 665d6a59161769e10b52ffcbcd5cd2db22f32681. Fixes <https://bugs.gnu.org/27489>. * gnu/packages/base.scm (glibc-2.25-patched, glibc-2.24, glibc-2.23) (glibc-2.22): Add glibc-vectorized-strcspn-guards.patch to patches. Move a comment where it belongs. * gnu/packages/patches/glibc-CVE-2017-1000366-pt2.patch: Swap with ... * gnu/packages/patches/glibc-CVE-2017-1000366-pt3.patch: ... this. * gnu/packages/patches/glibc-vectorized-strcspn-guards.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Fix formatting. Mark H Weaver
2017-06-24gnu: Remove libwmf....This package contains many security vulnerabilities and is no longer maintained upstream. See this discussion for more information: https://lists.gnu.org/archive/html/guix-devel/2017-05/msg00478.html * gnu/packages/image.scm (libwmf): Remove variable. * gnu/packages/wv.scm (wv)[inputs]: Remove libwmf. [arguments]: Remove field. * gnu/packages/abiword.scm (abiword)[inputs]: Remove libwmf. [source]: Remove patch 'abiword-wmf-version-lookup-fix.patch'. * gnu/packages/patches/abiword-wmf-version-lookup-fix.patch, gnu/packages/patches/libwmf-CAN-2004-0941.patch, gnu/packages/patches/libwmf-CVE-2006-3376.patch, gnu/packages/patches/libwmf-CVE-2007-0455.patch, gnu/packages/patches/libwmf-CVE-2007-2756.patch, gnu/packages/patches/libwmf-CVE-2007-3472.patch, gnu/packages/patches/libwmf-CVE-2007-3473.patch, gnu/packages/patches/libwmf-CVE-2007-3477.patch, gnu/packages/patches/libwmf-CVE-2009-1364.patch, gnu/packages/patches/libwmf-CVE-2009-3546.patch, gnu/packages/patches/libwmf-CVE-2015-0848+CVE-2015-4588.patch, gnu/packages/patches/libwmf-CVE-2015-4695.patch, gnu/packages/patches/libwmf-CVE-2015-4696.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Leo Famulari
2017-06-24gnu: glibc: Add mitigations for CVE-2017-1000366....* gnu/packages/base.scm (glibc/linux)[replacement]: New field. (glibc-2.25-patched): New variable. (glibc-2.24, glibc-2.23, glibc-2.22, glibc-2.21)[source]: Add patches. [replacement]: New field. (glibc-locales)[replacement]: New field. * gnu/packages/patches/glibc-CVE-2017-1000366-pt1.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt2.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt3.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Modified-By: Mark H Weaver <mhw@netris.org> Efraim Flashner
2017-06-23gnu: qemu: Fix CVE-2017-9524....* gnu/packages/patches/qemu-CVE-2017-9524.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu)[source]: Use it. Leo Famulari
2017-06-22gnu: Update calibre to 3.0.0....* gnu/local.mk: Remove patch. * gnu/packages/ebook.scm (calibre): Update to 3.0.0. * gnu/packages/patches/calibre-dont-load-remote-icons.patch: Remove file. Roel Janssen
2017-06-19gnu: exim: Fix CVE-2017-1000369....* gnu/packages/patches/exim-CVE-2017-1000369.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mail.scm (exim)[source]: Use it. Leo Famulari
2017-06-18gnu: miniupnpc: Update to 2.0.20170509....* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20170509. [source]: Remove obsolete patch. * gnu/packages/patches/miniupnpc-CVE-2017-8798.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
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