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2022-01-31gnu: python-seaborn: Fix build....* gnu/packages/python-xyz.scm (python-seaborn)[source]: Add patch. [arguments]: Add build phase 'patch-more-tests. * gnu/packages/patches/python-seaborn-2690.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus
2022-01-30gnu: Remove unused patch....* gnu/packages/patches/openssl-CVE-2019-1559.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2022-01-30gnu: OpenSSL: Add 3.0....* gnu/packages/tls.scm (openssl-3.0): New variable. * gnu/packages/patches/openssl-3.0-c-rehash-in.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2022-01-30gnu: audacity: Add fallback to locate ffmpeg via pkg-config....* gnu/packages/patches/audacity-ffmpeg-fallback.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/audio.scm (audacity)[patches]: Use it here. [inputs]: Add back ffmpeg. Liliana Marie Prikler
2022-01-29gnu: cpulimit: Fix build with glibc-2.32....* gnu/packages/patches/cpulimit-with-glib-2.32.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (cpulimit)[source]: Use it. Eric Bavier
2022-01-27gnu: jami-libclient: Properly return the list of audio managers....* gnu/packages/patches/jami-libclient-audio-managers.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (jami)[source]: Move all patches to... (%jami-sources): here and add the newly added patch. Maxim Cournoyer
2022-01-27gnu: jami: Reduce memory consumption in conversation view....This fixes <https://git.jami.net/savoirfairelinux/jami-client-qt/-/issues/649>. * gnu/packages/patches/jami-images-loading.patch: New patch. * gnu/packages/patches/jami-memory-usage.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/jami.scm (jami)[source]: Apply them. Maxim Cournoyer
2022-01-26gnu: util-linux: Fix CVE-2021-3995 and CVE-2021-3996....* gnu/packages/patches/util-linux-CVE-2021-3995.patch, gnu/packages/patches/util-linux-CVE-2021-3996.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/linux.scm (util-linux)[replacement]: New field. (util-linux/fixed): New variable. Leo Famulari
2022-01-26gnu: polkit: Fix CVE-2021-4034....* gnu/packages/patches/polkit-CVE-2021-4034.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/polkit.scm (polkit-mozjs)[replacement]: New field. * gnu/packages/polkit.scm (polkit-mozjs/fixed): New variable. Ludovic Courtès
2022-01-24gnu: zig: Update to 0.9.0...* gnu/packages/patches/zig-disable-libc-note-test.patch: Move patch changes to new file. * gnu/packages/patches/zig-use-system-paths.patch: Update line numbers. * gnu/packages/zig.scm: Update to 0.9.0 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Calum Irwin
2022-01-24gnu: xgboost: Update to 1.5.2....* gnu/packages/machine-learning.scm (xgboost, python-xgboost): Update to 1.5.2. (python-xgboost)[arguments]: Enable previously failing test. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: Update patch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Vinicius Monego
2022-01-23gnu: ppsspp: Update to 1.12.3....* gnu/packages/emulators.scm (ppsspp): Update to 1.12.3. [inputs]: Convert to new style. Add bash. Remove armips-source, lang and tests. [arguments]: Convert to list of g-exps. <#:phases>: Drop trailing #t. Directly refer to armips source and pspautotests. Check for #:tests? flag. Reenable VFPUSinCos test. * gnu/packages/patches/ppsspp-disable-upgrade-and-gold.patch: Adjust to version 1.12.3. Liliana Marie Prikler
2022-01-23gnu: gnome-builder: Fix build....* gnu/packages/patches/gnome-builder-update-libportal.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/gnome.scm (gnome-builder)[patches]: Use it here. [inputs, native-inputs]: Add python. Liliana Marie Prikler
2022-01-22gnu: behave: Update to 1.2.7.dev2....* gnu/packages/check.scm (behave): Update to 1.2.7.dev2. [source]: Switch to GIT-FETCH. Remove patches. [arguments]: Remove #:test-target. Add #:phases. [propagated-inputs]: Add PYTHON-COLORAMA and PYTHON-CUCUMBER-TAG-EXPRESSIONS. * gnu/packages/patches/behave-skip-a-couple-of-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2022-01-22gnu: jacal: Update to 1c7....* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Delete this. * gnu/packages/maths.scm (jacal)[source]: Delete this patch. [version]: Update to 1c7. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Morgan Smith
2022-01-22gnu: sssd: Fix build with samba-4.15.3....* gnu/packages/patches/sssd-fix-samba-4.15.3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add this. * gnu/packages/sssd.scm [source]: Add this. [native-inputs]: Add AUTOCONF. [arguments]: Add add-config-in phase. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Remco van 't Veer
2022-01-22gnu: gnome-todo: Update to 41.0 and enable tests....* gnu/packages/patches/gnome-todo-libportal.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnome.scm (gnome-todo): Update to 41.0. [source]: Apply patch. [arguments]: Use G-exp. [tests?]: Delete field, enabling tests. [phases]: Move check phase after install phase. {pre-check}: Add phase. [native-inputs]: Re-style. [inputs]: Likewise. [description]: Re-indent. Maxim Cournoyer
2022-01-21gnu: nix: Update to 2.4....* gnu/packages/package-management.scm (nix): Update to 2.4. [source]: Switch to Github repository since upstream no longer provides tarball. [native-inputs]: Add autoconf, autoconf-archive, automake, bison, flex, gcc, googletest, jq, libtool. [inputs]: Add libarchive, libcpuid, lowdown, zlib. * gnu/packages/patches/nix-dont-build-html-doc.diff: New file. * gnu/local.mk(dist_patch_DATA): Add corresponding entry. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Zhu Zihao
2022-01-20gnu: dune-istl: Update to 2.7.1....* gnu/packages/maths.scm (dune-istl): Update to 2.7.1. [arguments]: Parallelize build-tests phase. [source](patches) Remove patch that is no longer needed. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove above patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2022-01-20gnu: pulseview: Fix build...* gnu/packages/patches/pulseview-glib-2.68.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/electronics.scm (pulseview): Register it. Also disable the tests which are failing and remove a trailing #t. Mathieu Othacehe
2022-01-16gnu: wpa-wupplicant: Update to 2.10 [security fixes]....See the upstream advisory for more information on the security fixes contained in these updates: https://w1.fi/security/2022-1/sae-eap-pwd-side-channel-attack-update-2.txt * gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.10. [source]: Remove obsolete patches. * gnu/packages/patches/wpa-supplicant-CVE-2021-27803.patch, gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Leo Famulari
2022-01-19gnu: audacity: Update to 3.1.3...* gnu/packages/patches/audacity-add-include.patch: Delete file. * gnu/packages/patches/audacity-build-with-system-portaudio.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/audio (audacity): Update to 3.1.3 [inputs]: Use wxwidgets-3.1. Add linux-libre-headers, libjpeg-turbo, sqlite, portaudio. [#:configure-flags]: Update to disable conan during build, prefer system libraries, and disable features that phone home. [#:phases]: Add fix-cmake-rpath to ensure correct DT_RUNPATHs. Adjust comment-out-revision-indent and use-upstream-headers. [native-search-paths]: Add AUDACITY_MODULES_PATH and AUDACITY_PATH. Liliana Marie Prikler
2022-01-18gnu: python-piexif: Fix patch....Line-endings in the patch need to be CRLF to meet the patched file's content. * gnu/packages/patches/python-piexif-fix-tests-with-pillow-7.2.patch: Change line-endings of patched lines. Hartmut Goebel
2022-01-18gnu: python-pydot: Update to 1.4.2....* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.2. [source](patches): Remove. * gnu/packages/patches/python-pydot-regression-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2022-01-18gnu: gnome-control-center: Update to 41.2....* gnu/packages/patches/gnome-control-center-libexecdir.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnome.scm (gnome-control-center): Update to 41.2. [source]: Apply patch. [phases]{no-polkit-magic}: New phase. [native-inputs]: Use new style. Add python. [propagated-inputs]: Use new style. Replace gdk-pixbuf by librsvg. Maxim Cournoyer
2022-01-17gnu: Add xmonad-next and ghc-xmonad-contrib-next....Fixes: <https://issues.guix.gnu.org/issue/52784>. * gnu/packages/wm.scm (xmonad-next): New variable. Compared to xmonad: Update to 0.17.0. [inputs]: Add GHC-DATA-DEFAULT-CLASS, remove GHC-EXTENSIBLE-EXCEPTIONS, GHC-DATA-DEFAULT, GHC-SEMIGROUPS, and GHC-UTF8-STRING. [native-inputs]: Add GHC-QUICKCHECK and GHC-QUICKCHECK-CLASSES. (ghc-xmonad-contrib-next): New variable. Compared to ghc-xmonad-contrib: Update to 0.17.0. [propagated-inputs]: Remove GHC-OLD-TIME, GHC-EXTENSIBLE-EXCEPTIONS, GHC-SEMIGROUPS. [native-inputs]: Add GHC-QUICKCHECK and GHC-HSPEC. (xmonad): Inherit from xmonad-next. (ghc-xmonad-contrib): Inherit from ghc-xmonad-contrib-next. * gnu/packages/patches/xmonad-next-dynamic-linking.patch: New patch. Update of xmonad-dynamic-linking.patch to apply to xmonad-next. * gnu/local.mk: Add it. Signed-off-by: Lars-Dominik Braun <lars@6xq.net> John Kehayias
2022-01-17gnu: password-store: Ensure compatibility with tree@2.0....Fixes <https://bugs.gnu.org/53238>, et.al. * gnu/packages/patches/password-store-tree-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/password-utils.scm (password-store)[source](patches): New field. Marius Bakke
2022-01-17Merge branch 'version-1.4.0'...With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm Maxim Cournoyer
2022-01-11gnu: libtool: Skip the nopic tests on riscv....* gnu/packages/patches/libtool-skip-tests2.patch: Adjust to add riscv to skipped nopic tests. Efraim Flashner
2022-01-10gnu: binutils: Fix CVE-2021-45078....This is for the release branch. Should we also use a graft for the master branch? It would be even better if we could add a binutils-next package that users could install, in my opinion. * gnu/packages/patches/binutils-CVE-2021-45078.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (binutils)[source]: Use it. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Leo Famulari
2022-01-10gnu: gtk: Update to 4.4.1....* gnu/packages/patches/gtk-introspection-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gtk.scm (gtk): Update to 4.4.1. [origin]: Apply new patch. [phases]{pre-check}: Set TZDIR. [native-inputs]: Add graphene, python-pygobject and tzdata. Maxim Cournoyer
2022-01-10gnu: shadow: Update to 4.9....* gnu/packages/admin.scm (shadow): Update to 4.9. [source]: Remove hurd patch, merged upstream. [phases]{fix-linking-to-pam}: New phase. * gnu/packages/patches/shadow-hurd-pctrl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it. Maxim Cournoyer
2022-01-09gnu: Remove leftover patches for Blender 2.79....This is a followup to commit 23da063ea3bb6a579f0fb87d2e5e00fed9962775. * gnu/packages/patches/blender-2.79-gcc8.patch, gnu/packages/patches/blender-2.79-gcc9.patch, gnu/packages/patches/blender-2.79-newer-ffmpeg.patch, gnu/packages/patches/blender-2.79-oiio2.patch, gnu/packages/patches/blender-2.79-python-3.7-fix.patch, gnu/packages/patches/blender-2.79-python-3.8-fix.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Leo Famulari
2022-01-09Revert "gnu: tree: Fix problem with no output when fd3 is present."...This reverts commit bd4f314bbacaaa56751be3a4769f2082be747d24. Tobias Geerinckx-Rice
2022-01-15gnu: passwordsafe: Update to 5.1....* gnu/packages/gnome.scm (passwordsafe): Update to 5.1. * gnu/packages/patches/passwordsafe-meson-remove-extra-argument.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> raingloom
2022-01-15gnu: libsigrokdecode: Fix build with python 3.9....* gnu/packages/patches/libsigrokdecode-python3.9-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/electronics.scm (libsigrokdecode)[native-inputs]: Add automake, autoconf. [source](patches): New field. Danny Milosavljevic
2022-01-15gnu: Add python-piexif....* gnu/packages/python-xyz.scm (python-piexif): New variable. * gnu/packages/patches/python-piexif-fix-tests-with-pillow-7.2.patch: New file. * gnu/packages/python-xyz.scm (dist_patch_DATA): Add it. Hartmut Goebel
2022-01-15gnu: tree: Fix problem with no output when fd3 is present....* gnu/packages/patches/tree-disable-stddata.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/admin.scm (tree)[source](patches): New field. Marius Bakke
2022-01-14gnu: jami: Fix crash on exit....* gnu/packages/patches/jami-fix-crash-on-quit.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (jami): Apply it. Maxim Cournoyer
2022-01-14gnu: Calibre: Fix a build failure with recent zeroconf....Fixes <https://issues.guix.gnu.org/53247>. * gnu/packages/patches/calibre-fix-zeroconf.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ebook.scm (calibre)[source]: Use it. Leo Famulari
2022-01-14gnu: quassel: Update to 0.14.0....* gnu/packages/irc.scm (quassel): Update to 0.14.0. [source]: Remove patch. [inputs]: Add boost, perl, sonnet. * gnu/packages/patches/quassel-qt-514-compat.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2022-01-13gnu: lua: Add version 5.4.3....* gnu/packages/lua.scm (lua-5.4): New variable. * gnu/packages/patches/lua-5.4-liblua-so.patch, gnu/packages/patches/lua-5.4-pkgconfig.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Alex Devaure
2022-01-13gnu: bubblewrap: Update to 0.5.0....* gnu/packages/patches/bubblewrap-fix-locale-in-tests.patch: Add it. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (bubblewrap): Update to 0.5.0. [source]: Add patch. [arguments]: Adjust test substitutions. [inputs]: Remove labels. [native-inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org> kiasoc5
2022-01-13gnu: jami: Update to 20211223.2.37be4c3....* gnu/packages/patches/pjproject-correct-the-cflags-field.patch: Delete file. * gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register them. * gnu/packages/jami.scm (%jami-version): Update version string. (%jami-sources): Adjust snippet. (jami-apply-custom-patches): Use G-Exp. (pjproject-jami): Use Savoir-faire Linux's fork and update to 2.11-0.e1f389d. [phases]: Adjust and update accordingly. (%ffmpeg-default-configure-flags): Capitalize and reword comments. (ffmpeg-jami)[native-inputs]: Delete field. [tests?]: Add comment and move into the SUBSTITUTE-KEYWORD-ARGUMENTS use. [phases]: Use G-Exp and update the list of patches. (libring): Deprecate and rename to... (libjami): ... this. Move the arguments field before the inputs. [tests?]: Add explanatory comment. [configure-flags]: Add '--disable-agent', with explanatory comment. [phases]{change-directory}: Rename to... {change-directory/maybe}: ... this, to attempt but not enforce a directory change so as to also support using a Git checkout as source. {add-lib-dir}: Remove phase. [inputs]: Use new style. [native-inputs]: Add cppunit. (libringclient): Deprecate and rename to... {jami-libclient}: ... this. [configure-flags]: Enable LIBWRAP. [phases]{change-directory/maybe}: Renamed from change-directory, for reasons described above. [inputs]: Adjust accordingly. (jami-gnome): Move the input fields below the arguments field. [phases]{change-directory/maybe}: Renamed from change-directory, for reasons described above. [inputs]: Rename libringclient to jami-libclient and use new style. [native-inputs]: Use new style. [propagated-inputs]: Delete field. (jami-qt): Deprecate and rename to... (jami): ... this. [phases]{change-directory/maybe}: Renamed from change-directory, for reasons described above. [native-inputs]: Add python. [inputs]: Adjust accordingly. [propagated-inputs]: Delete field. Maxim Cournoyer
2022-01-13gnu: pjproject: Apply patch to install the libpjsua2 shared library....* gnu/packages/patches/pjproject-install-libpjsua2.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/telephony.scm (pjproject): Apply it. Maxim Cournoyer
2022-01-11gnu: nautilus: Fix build with libportal-0.5....* gnu/packages/patches/nautilus-add-libportal-gtk3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (nautilus)[source]: Use it. Pierre Langlois
2022-01-11gnu: QEMU: Update to 6.2.0....* gnu/packages/patches/qemu-CVE-2021-20203.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu): Update to 6.2.0. [source](patches): Remove obsolete patch. Marius Bakke
2022-01-11gnu: epiphany: Fix build with libportal-0.5....* gnu/packages/patches/epiphany-update-libportal-usage.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (epiphany)[source]: Use it. Guillaume Le Vaillant
2022-01-11gnu: eog: Fix build with libportal-0.5....After the update to libportal-0.5 in 294476022f19139e290acb448d4575de0f851673 eog fails with: ../eog-40.3/src/eog-util.c:48:10: fatal error: libportal/portal-gtk3.h: No such file or directory This was already fixed upstream and this commits extracts the patch. * gnu/packages/patches/eog-update-libportal-usage.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnome.scm(eog)[origin]: Add new patch. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Daniel Meißner
2022-01-11gnu: Add htslib-for-stringtie....* gnu/packages/bioinformatics.scm (htslib-for-stringtie): New variable. * gnu/packages/patches/htslib-for-stringtie.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus
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