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2016-03-02gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes]....* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Mark H Weaver
2016-03-01gnu: ilmbase: Add patch to fix build on i686....Fixes <http://bugs.gnu.org/22049>. * gnu/packages/patches/ilmbase-fix-tests.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/graphics.scm (ilmbase)[source]: Add patch. Leo Famulari
2016-03-01gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0......See <http://openssl.org/news/secadv/20160301.txt>. Also fixes <http://bugs.gnu.org/22831>. * gnu/packages/patches/openssl-c-rehash-in.patch: New file. * gnu/packages/tls.scm (openssl)[replacement]: New field. (openssl-1.0.2g): New variable. Ludovic Courtès
2016-02-27gnu: bitlbee: Update to 3.4.1....* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (bitlbee): Update to 3.4.1. [source]: Remove patch. Mark H Weaver
2016-02-27gnu: scribus: Update to 1.5.1....* gnu/packages/scribus.scm (scribus): Update to 1.5.1. [source]: Remove patch. * gnu/packages/patches/scribus-qobject.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. Ricardo Wurmus
2016-02-25gnu: Add python-paste....* gnu/packages/python.scm (python-paste, python2-paste): New variables. * gnu/packages/patches/python-paste-remove-timing-test.patch: New file. * gnu/packages/patches/python-paste-remove-website-test.patch: New file. * gnu-system.am (dist_patch_DATA): Add them. Christopher Allan Webber
2016-02-25Merge branch 'media-updates'Mark H Weaver
2016-02-24gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739]....* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file. * gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.7.3. (libssh-0.5): Rename to... (libssh-0.6): ... this. Update to 0.6.5. [source]: Add patch for CVE-2016-0739. (guile-ssh)[inputs]: Use libssh-0.6. Modified-By: Mark H Weaver <mhw@netris.org> Leo Famulari
2016-02-24gnu: xf86-video-vmware: Update to 13.1.0....* gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.1.0. [source]: Remove patch. Andy Wingo
2016-02-24gnu: xf86-video-trident: Update to 1.3.7....* gnu/packages/patches/xf86-video-trident-remove-mibstore.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.7. [source]: Remove patch. Andy Wingo
2016-02-24gnu: xf86-video-tdfx: Update to 1.4.6....* gnu/packages/patches/xf86-video-tdfx-remove-mibstore.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.6. [source]: Remove patch. Andy Wingo
2016-02-24gnu: xf86-video-sis: Update to 0.10.8....* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch, gnu/packages/patches/xf86-video-sis-update-api.patch: Delete files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.8. [source]: Remove patches. Andy Wingo
2016-02-24gnu: xf86-video-siliconmotion: Update to 1.7.8....* gnu/packages/patches/xf86-video-siliconmotion-remove-mibstore.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.8. [source]: Remove patch. Andy Wingo
2016-02-24gnu: xf86-video-r128: Update to 6.10.1....* gnu/packages/patches/xf86-video-r128-glibc-2.20.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.1. [source]: Remove patch. Andy Wingo
2016-02-24gnu: xf86-video-mga: Update to 1.6.4....* gnu/packages/patches/xf86-video-mga-glibc-2.20.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.4. [source]: Remove patch. Andy Wingo
2016-02-22gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197....* gnu/packages/patches/qemu-CVE-2015-8619.patch, gnu/packages/patches/qemu-CVE-2016-1981.patch, gnu/packages/patches/qemu-CVE-2016-2197.patch, gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/qemu.scm (qemu)[source]: Add patches. Mark H Weaver
2016-02-19gnu: cpio: Add fix for CVE-2016-2037....* gnu/packages/patches/cpio-CVE-2016-2037.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/cpio.scm (cpio)[source]: Add patch. Leo Famulari
2016-02-19gnu: glibc: Add fix for CVE-2015-7547....* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc)[source]: Add patch. Mark H Weaver
2016-02-15gnu: Add slurm....* gnu/packages/parallel.scm (slurm): New variable. * gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/parallel.scm: Introduce license name space. Co-authored-by: Andreas Enge <andreas@enge.fr> Pjotr Prins
2016-02-15gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805]....Note: The previous fix for CVE-2015-7805 was incomplete. * gnu/packages/patches/libsndfile-CVE-2014-9496.patch, gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26. [source]: Remove patches. Mark H Weaver
2016-02-13gnu: Add ocaml-findlib....* gnu/packages/ocaml.scm (ocaml-findlib): New variable. * gnu/packages/patches/ocaml-findlib-make-install.patch: New file. * gnu-system.am (dist_patch_DATA): Register it. Jan Nieuwenhuizen
2016-02-12gnu: gnupg: Add upstream fix for test failures on x86_64....Fixes <https://debbugs.gnu.org/22558>. * gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnupg.scm (gnupg)[source]: Add patch. Mark H Weaver
2016-02-12gnu: Add tclxml....* gnu/packages/patches/tclxml-3.2-install.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/tcl.scm (tclxml): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Jan Nieuwenhuizen
2016-02-11gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes....* gnu/packages/patches/icecat-update-graphite2.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Add TODO comment about using the system graphite2 in the future. Mark H Weaver
2016-02-10gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}....* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch, gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch, gnu/packages/patches/mit-krb5-CVE-2015-2696.patch, gnu/packages/patches/mit-krb5-CVE-2015-2697.patch, gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch, gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files. * gnu/packages/patches/mit-krb5-CVE-2015-8629.patch, gnu/packages/patches/mit-krb5-CVE-2015-8630.patch, gnu/packages/patches/mit-krb5-CVE-2015-8631.patch, gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3. [source]: Update URI to download conventional .tar.gz file. Add patches. [native-inputs]: Remove old patches-as-inputs. [arguments]: Remove hacks needed to cope with the older unconventional tarball that contained an inner source tarball and signature: Remove #:modules argument, and the custom 'unpack' and 'apply-patches' phases. Mark H Weaver
2016-02-06gnu: xdotools: Update to 3.20150503.1...* gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1. * gnu/packages/patches/xdotool-fix-makefile.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. Christopher Allan Webber
2016-02-06gnu: Add python-pygpgme...* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables. * gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. Christopher Allan Webber
2016-02-06gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites....* gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Mark H Weaver
2016-02-05gnu: icecat: Update to 38.6.0-gnu1....* gnu/packages/patches/icecat-bug-1146335-pt1.patch, gnu/packages/patches/icecat-bug-1146335-pt2.patch, gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch, gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1. [source]: Remove patches. Mark H Weaver
2016-02-04gnu: jasper: Add fixes for several security flaws....* gnu/packages/patches/jasper-CVE-2007-2721.patch, gnu/packages/patches/jasper-CVE-2008-3520.patch, gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch, gnu/packages/patches/jasper-CVE-2014-8137.patch, gnu/packages/patches/jasper-CVE-2014-8138.patch, gnu/packages/patches/jasper-CVE-2014-8157.patch, gnu/packages/patches/jasper-CVE-2014-8158.patch, gnu/packages/patches/jasper-CVE-2014-9029.patch, gnu/packages/patches/jasper-CVE-2016-1867.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (jasper)[source]: Add patches. Leo Famulari
2016-02-04gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f....* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch. Mark H Weaver
2016-02-03gnu: Add emacs-constants....* gnu/packages/emacs.scm (emacs-constants): New variable. * gnu/packages/patches/emacs-constants-lisp-like.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Federico Beffa
2016-02-03gnu: Add emacs-scheme-complete....* gnu/packages/emacs.scm (emacs-scheme-complete): New variable. * gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch. * gnu-system.am (dist_patch_DATA): Add the new patch. Federico Beffa
2016-02-03gnu: qemu: Update to 2.5.0; add fixes for security flaws....* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file. * gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch, gnu/packages/patches/qemu-CVE-2015-8558.patch, gnu/packages/patches/qemu-CVE-2015-8567.patch, gnu/packages/patches/qemu-CVE-2015-8613.patch, gnu/packages/patches/qemu-CVE-2015-8701.patch, gnu/packages/patches/qemu-CVE-2015-8743.patch, gnu/packages/patches/qemu-CVE-2016-1568.patch, gnu/packages/patches/qemu-CVE-2016-1922.patch: New files. * gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the new patches. * gnu/packages/qemu.scm (qemu): Update to 2.5.0. [source]: Remove old patches and add new ones. [arguments]: Add 'disable-test-qga' phase. (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables. Mark H Weaver
2016-02-01gnu: linux-libre: Update to 4.4.1....* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (linux-libre): Update to 4.4.1. [source]: Remove patch. Mark H Weaver
2016-01-31gnu: Add pinball....* gnu/packages/games.scm (pinball): New variable. * gnu/packages/patches/pinball-const-fix.patch, gnu/packages/patches/pinball-cstddef.patch, gnu/packages/patches/pinball-missing-separators.patch, gnu/packages/patches/pinball-src-deps.patch, gnu/packages/patches/pinball-system-ltdl.patch: New patches. * gnu-system.am (dist_patch_DATA): Add them. Eric Bavier
2016-01-31gnu: perl-tk: Update to 804.033....* gnu/packages/tcl.scm (perl-tk): Update to 804.033. [source]: Remove patch. * gnu/packages/patches/perl-tk-x11-discover.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch. Efraim Flashner
2016-01-28gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs....* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch, gnu/packages/patches/icecat-CVE-2016-1935.patch, gnu/packages/patches/icecat-bug-1146335-pt1.patch, gnu/packages/patches/icecat-bug-1146335-pt2.patch, gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches. Mark H Weaver
2016-01-24Merge branch 'master' into core-updatesMark H Weaver
2016-01-23gnu: Add TopHat....* gnu/packages/bioinformatics.scm (tophat): New variable. * gnu/packages/patches/tophat-build-with-later-seqan.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. Ricardo Wurmus
2016-01-21gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}....* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch, gnu/packages/patches/libtiff-oob-accesses-in-decode.patch, gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff): Update to 4.0.6. [source]: Add patches. Mark H Weaver
2016-01-20gnu: Add perl-module-pluggable....This Perl module was moved out of Perl core in v5.19.0. * gnu/packages/perl.scm (perl-module-pluggable): New variable. * gnu/packages/patches/perl-module-pluggable-search.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier
2016-01-20gnu: linux-libre: Add fix for CVE-2016-0728....* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/linux.scm (linux-libre)[source]: Add patch. Mark H Weaver
2016-01-20gnu: arb: Correct patch....* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file. This is a follow-up to commit ffc8f345111566e8336cbb5a77a96973826165d8. Andreas Enge
2016-01-20gnu: arb: Update to 2.8.1....* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch. * gnu/packages/patches/arb-ldconfig.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch. Andreas Enge
2016-01-20gnu: doxygen: Update to 1.8.11....* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11. Drop one patch. [build-system]: Switch to cmake-build-system, since gnu-build-system is not supported any more. [arguments]: Adapt. [native-inputs]: Drop unused perl. * gnu/packages/patches/doxygen-tmake.patch: Remove file. * gnu/packages/patches/doxygen-test.patch: Adapt. * gnu-system.am (dist_patch_DATA): Unregister patch. Andreas Enge
2016-01-19Merge branch 'master' into core-updatesMark H Weaver
2016-01-15gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558]....* gnu/packages/patches/librsvg-tests.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/gnome.scm (librsvg): Update to 2.40.13. [source]: Remove patch. Mark H Weaver
2016-01-15gnu: automake: Adjust to deal with Perl 5.22....Fixes <http://bugs.gnu.org/22375>. * gnu/packages/patches/automake-regexp-syntax.patch: New file. * gnu/packages/autotools.scm (automake)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it. Ludovic Courtès
2016-01-14gnu: bowtie: Update to 2.2.6....* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6. [source]: Remove patch; do not set CC and CPP variables. [inputs]: Add "tbb". [arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom "install" phase. * gnu/packages/patches/bowtie-fix-makefile.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch file. Ricardo Wurmus
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