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2020-12-15gnu: Add rust-ndarray-0.12.Efraim Flashner
* gnu/packages/crates-io.scm (rust-ndarray-0.12): New variable. * gnu/packages/patches/rust-ndarray-remove-blas-src-dep.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-12-14gnu: Add python-3.9.Tanguy Le Carrour
* gnu/packages/python.scm (python-3.9): New variable. * gnu/packages/patches/python-3.9-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-14gnu: alsa-modular-synth: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/audio.scm (alsa-modular-synth): Update to 2.2.0. [arguments]: Remove them all. [source]: Remove patch. [native-inputs]: Remove gcc@5. * gnu/packages/patches/alsa-modular-synth-fix-vocoder.patch: Remove it. * gnu/local.mk (dist_patch_DATA): Remove patch.
2020-12-13gnu: purescript: Update patch for Purescript 0.13.8.BonfaceKilz
* gnu/packages/patches/purescript-relax-dependencies.patch: Update patch for new version of Purescript. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-12-13gnu: Qt: Update to 5.15.2.Marius Bakke
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras, qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors, qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel, qtwebglplugin, qtwebview, qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech, qtwebengine): Update to 5.15.2. (qtbase)[source](patches): Remove obsolete patch. (qtwayland)[source](modules, snippet): Remove. [inputs]: Add VULKAN-HEADERS. (qtwebengine)[source](snippet): Adjust preserved files. [arguments]: Remove two obsolete phases. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-12-13Merge branch 'master' into ungraftingMarius Bakke
2020-12-12gnu: renpy: Use system fribidi and drop generated sources.Leo Prikler
* gnu/packages/patches/renpy-use-system-fribidi.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/game-development.scm (renpy)[source]<patches> Use it here. <modules>: Add (guix build utils). <snippet>: Drop generated sources and fribidi sources. (arguments)[phases]: Add fix-include-paths. (inputs): Add fribidi. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-11gnu: knot-resolver: Update to 5.2.1.Simon South
* gnu/packages/dns.scm (knot-resolver): Update to 5.2.1. [source]: Remove obsolete patch. * gnu/packages/patches/knot-resolver-fix-map-command-on-32-bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-12-11gnu: sbcl-geco: Update to 2.1.1.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-geco): Update to 2.1.1. [source]: Fetch from Github. [home-page]: Update to author's page. * gnu/packages/patches/sbcl-geco-fix-organism-class.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-11gnu: busybox: Update to 1.32.0.Efraim Flashner
* gnu/packages/busybox.scm (busybox): Update to 1.32.0. [source]: Remove patch. * gnu/packates/patches/busybox-1.31.1-fix-build-with-glibc-2.31.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-09gnu: pciutils: Fix compilation error on GNU/Hurd.Ludovic Courtès
* gnu/packages/patches/pciutils-hurd-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pciutils.scm (pciutils)[arguments]: Add 'apply-hurd-patch' phase when (hurd-target?) is true. [inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
2020-12-09gnu: libssh2: Fix CVE-2019-17498.Efraim Flashner
* gnu/packages/patches/ssh.scm (libssh2)[source]: Add patch. * gnu/packages/patches/libssh2-CVE-2019-17498.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-12-08gnu: Python: Fix CVE-2020-26116.Marius Bakke
* gnu/packages/patches/python-CVE-2020-26116.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-3.8)[source](patches): Add it.
2020-12-08gnu: ghostscript: Fix CVE-2020-15900.Marius Bakke
* gnu/packages/patches/ghostscript-CVE-2020-15900.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ghostscript.scm (ghostscript)[source](patches): Add it.
2020-12-08gnu: ghostscript: Fix build with FreeType 2.10.4.Marius Bakke
This fixes a build failure from 79b31767d084a2feeb2edcb41ae863a0d534b847. * gnu/packages/patches/ghostscript-freetype-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ghostscript.scm (ghostscript)[source](patches): Add it.
2020-12-07gnu: minimap2: Fix build on aarch64-linux.Efraim Flashner
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust configure-flags to be better per-architecture. [source]: Add patch. * gnu/packages/patches/minimap2-aarch64-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-12-06gnu: hplip: Update to 3.20.11.Tobias Geerinckx-Rice
* gnu/packages/cups.scm (hplip): Update to 3.20.11. [source]: Remove upstreamed patch. * gnu/packages/patches/hplip-fix-bug-1898438.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-06gnu: pam-mount: Update to 2.17.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (pam-mount): Update to 2.17. [source]: Remove upstreamed patch. * gnu/packages/patches/pam-mount-luks2-support.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-06gnu: knot-resolver: Update to 5.2.0.Simon South
* gnu/packages/dns.scm (knot-resolver): Update to 5.2.0. [source]: Add patch from upstream commit to fix the internal map() function on 32-bit platforms. [native-inputs]: Add texinfo to enable generating the manual in Info format. [inputs]: Add nghttp2:lib to enable the new DNS-over-HTTPS implementation. * gnu/packages/patches/knot-resolver-fix-map-command-on-32-bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-05gnu: Add libexpected.Brett Gilio
* gnu/packages/cpp.scm (libexpected): New variable. * gnu/packages/patches/libexpected-nofetch.patch: Add patch. * gnu/local.mk: Reference patch.
2020-12-05gnu: superlu-dist: Update to 6.4.0.Eric Bavier
* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0 [source]: Use git-fetch, as tarballs are no longer published. * gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first hunk; they are unnecessary.
2020-12-05gnu: combinatorial-blas: Adjust AWPM headers for library use.Eric Bavier
Fixes use in latest versions of SuperLU_DIST. See e.g. https://github.com/xiaoyeli/superlu_dist/issues/60 * gnu/packages/patches/combinatorial-blas-awpm.patch: Remove globals related to performance measurement. Declare non-template function inline.
2020-12-05gnu: cl-asdf: Improve priorities of configuration file search.Guillaume Le Vaillant
* gnu/packages/patches/cl-asdf-config-directories.patch: New file. * gnu/local.mk (dist_PATCH_DATA): Add it. * gnu/packages/lisp.scm (cl-asdf)[native-inputs]: Add it. [arguments]: Apply the new patch. Co-authored-by: Pierre Neidhardt <mail@ambrevar.xyz>
2020-12-01Revert "gnu: python-packaging: Update to 20.4."Marius Bakke
This reverts commit 71b15b4874b7f9ec7001d2916a8ab27dcce6cdc0.
2020-12-01gnu: clisp: Remove unused patch.Guillaume Le Vaillant
This is a follow-up for 074236d19796577b2f55b3c7030c14242efa8f3f. * gnu/patches/clisp-remove-failing-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-01gnu: Add clml.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (cl-clml, sbcl-clml): New variables. * gnu/packages/patches/sbcl-clml-fix-types.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-30gnu: python-packaging: Update to 20.4.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (python-packaging): Update to 20.4. [source]: Remove patch that has been merged upstream. * gnu/packages/patches/python-packaging-test-arch.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Apply removal. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-11-30gnu: sudo: Update to 1.9.4.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sudo): Update to 1.9.4. [source]: Add patch. * gnu/packages/patches/sudo-fix-build-without-sendmail.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-29gnu: weasyprint: Update to 52.1.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/42409>. * gnu/packages/patches/weasyprint-library-paths.patch: Delete. * gnu/packages/pdf.scm (weasyprint): Update to 52.1 [phases]{patch-library-paths}: Adjust. {check}: Remove. {register-dejavu-font}: New phase. [native-inputs]: Add font-dejavu.
2020-11-29gnu: python-tinycss2: Update to 1.1.0.Maxim Cournoyer
* gnu/packages/patches/python-tinycss2-flake8-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it. * gnu/packages/python-web.scm (python-tinycss2): Update to 1.1.0. [source]: Remove patch. [arguments]: Remove field, disabling tests. [native-inputs]: Remove field.
2020-11-29gnu: python-cairocffi: Update to 1.2.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-cairocffi): Update to 1.2.0. [source]: Fetch from Git. [patches]: Remove field. [inputs]: Remove pango. [native-inputs]: Remove pkg-config and python-docutils. Add python-numpy and python-sphinx-rtd-theme. [phases]{patch-paths}: Adjust. Fix the patching of gdk-3. {disable-linters}: New phase. {install-doc}: Adjust. The license file is now installed by a build phase. * gnu/packages/patches/python-cairocffi-dlopen-path.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it.
2020-11-28Merge branch 'staging'Marius Bakke
2020-11-28gnu: Add gnash.Vinicius Monego
* gnu/packages/animation.scm (gnash): New variable. * gnu/packages/patches/gnash-fix-giflib-version: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-11-27gnu: Transmission: Fix localization of transmission-gtk.Simon South
* gnu/packages/bittorrent.scm (transmission)[source]: Add patch to make Transmission honor the "localedir" option to its configure script. [arguments]<configure-flags>: Use "localedir" to set the "gui" output as the location for (GTK-specific) localization data. <phases>: Update "move-gui" to remove a now-superfluous call to "mkdir" and omit "share/locale" from the list of directories needing to be moved between outputs. * gnu/packages/patches/transmission-honor-localedir.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-11-26Merge branch 'master' into stagingMarius Bakke
2020-11-26gnu: python-aiohttp: Update to 3.7.3.Marius Bakke
* gnu/packages/patches/python-aiohttp-3.6.2-no-warning-fail.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-aiohttp)[source](patches): Remove. [arguments]: Use UTIME instead of calling out to 'touch'. Don't delete now-working tests; but disable some new ones. Replace the 'check' phase. [propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS. [native-inputs]: Remove PYTHON-PYTEST-RUNNER, PYTHON-PYTEST-XDIST, PYTHON-PYTEST-TIMEOUT, and PYTHON-PYTEST-FORKED. Add PYTHON-PYTEST and PYTHON-RE-ASSERT.
2020-11-25gnu: openssh: Fix ssh-copy-id.Jesse Gibbons
* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-11-26Merge branch 'master' into stagingMarius Bakke
2020-11-25gnu: Mutt: Update to 2.0.2 [fixes CVE-2020-28896].Leo Famulari
* gnu/packages/mail.scm (mutt): Update to 2.0.2. * gnu/packages/patches/mutt-store-references.patch: Adjust to changes in Mutt 2.0.2.
2020-11-24gnu: mupdf: Use only dynamic linking.Tobias Geerinckx-Rice
* gnu/packages/pdf.scm (mupdf)[source]: Add patch. [arguments]: Build and find the shared library. (zathura-pdf-mupdf)[arguments]: Add a 'remove-libmupdfthird.a-requirement phase to deal with the now-missing static one. * gnu/packages/patches/mupdf-fix-linkage.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23Merge branch 'master' into stagingMarius Bakke
2020-11-23gnu: ungoogled-chromium: Update to 87.0.4280.66-0.1f7cdef.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 87. (arch-patch, %arch-revision, %arch-patches): Remove. (ungoogled-chromium-snippet): Remove %ARCH-PATCHES. (%ungoogled-revision): Set to 1f7cdef6dfa8f612afde8f988131f210612333e0. (%chromium-version): Set to 87.0.4280.66. (ungoogled-chromium)[source]: Update hash. [arguments]: Adjust #:configure-flags for changes in 87. Enable Pipewire support in WebRTC. [native-inputs]: Add WAYLAND. [inputs]: Add PIPEWIRE and WAYLAND. (ungoogled-chromium/wayland): Implement as a wrapper over UNGOOGLED-CHROMIUM. * gnu/packages/patches/ungoogled-chromium-system-nspr.patch: Adjust for 87.
2020-11-23gnu: eigen: Add upstream bugfix patch.Tobias Geerinckx-Rice
This fixes the build of nanopolish, imp, and others. Reported by apteryx in #guix. * gnu/packages/algebra.scm (eigen)[source]: Add patch. * gnu/packages/patches/eigen-remove-openmp-error-counting.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23gnu: python-pydot: Run tests.Efraim Flashner
* gnu/packges/graphviz.scm (python-pydot)[source]: Add patch. [arguments]: Override check phase. [native-inputs]: Add graphviz. * gnu/packages/patches/python-pydot-regression-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-11-23gnu: lsof: Make test failures fatal.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[source]: Add patch to make test suite failures stop the build. * gnu/packages/patches/lsof-fatal-test-failures.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-22gnu: ocaml-cairo2: Patch test phase.Brett Gilio
* gnu/local.mk (ocaml-cairo2-caml_ba_array_fix.patch): Add ref. * gnu/packages/ocaml.scm (ocaml-cairo2): Utilize patch. * gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Add file.
2020-11-22Merge branch 'master' into stagingMarius Bakke
2020-11-21gnu: xpra: Update to 4.0.5.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xpra): Update to 4.0.5. [source]: Remove xpra-4.0.4-norequests.patch. * gnu/packages/patches/xpra-4.0.4-norequests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-20gnu: grim: Remove obsolete patch.Marius Bakke
* gnu/packages/patches/grim-revert-output-rotation.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (grim)[source](patches): Remove.
2020-11-19gnu: gajim: Honour $GAJIM_PLUGIN_PATH.Tobias Geerinckx-Rice
This allows Gajim to find plug-ins installed with Guix. Reported at <http://issues.guix.gnu.org/44730>. However, at the time of pushing both packaged plug-ins (gajim-omemo and gajim-openpgp) require an unstable version of Gajim and will not load. * gnu/packages/messaging.scm (gajim)[arguments]: Replace the ‘add-plugin-dirs’ substitution phase with a... [source]: ...patch that won't silently break in the future. * gnu/packages/patches/gajim-honour-GAJIM_PLUGIN_PATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
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