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2022-05-12gnu: python-scipy: Update to 1.8.0 and enable parallel build....* gnu/packages/python-science.scm (python-scipy): Update to 1.8.0. [modules]: New argument. [phases]{disable-broken-tests}: Delete phase. {configure-openblas}: Streamline configuration template. {parallelize-build}: New phase. {install-doc}: Move before 'check phase. Remove now extraneous 'add-installed-pythonpath' call. Remove the SPHINXBUILD and PYVER Make variables, as well as conf.py patching. Provide SPHINXOPTS to build doc in parallel. Simply recursively copy the 'html' output directory to install the doc. {check}: Remove extraneous INPUTS and OUTPUTS arguments. Start tests with the 'runtests.py' launcher, which accepts a '-j' argument to run the tests in parallel. [native-inputs]: Sort inputs. Add python-pytest-xdist and python-threadpoolctl. [home-page]: Update. Maxim Cournoyer
2022-05-12gnu: python-scipy: Move input fields below arguments field....* gnu/packages/python-science.scm (python-scipy): Move inputs fields below the arguments field. [phases]: Use gexp. {configure-openblas}: Use this-package-input. {check}: Remove extraneous 'add-installed-pythonpath' call. {install-doc}: Adjust accordingly. Maxim Cournoyer
2022-05-06gnu: python-vedo: Update to 2022.2.0....* gnu/packages/python-science.scm (python-vedo): Update to 2022.2.0. [arguments]: Add 'fix-tests' phase. [inputs]: Move fenics and python-matplotlib to propagated-inputs. Move python-pkgconfig from here... [native-inputs]: ...to here. [propagated-inputs]: Add python-deprecated (and fenics and python-matplotlib). [description]: Make description more accurate. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: python-vedo: Disable sanity check....* gnu/packages/python-science.scm (python-vedo)[arguments]: Disable sanity check. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: python-vedo: Remove input labels....* gnu/packages/python-science.scm (python-vedo)[inputs]: Remove labels and sort the inputs. [propagated-inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: python-vedo: Honor #:tests? flag....* gnu/packages/python-science.scm (python-vedo)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Also remove its trailing boolean. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: Add python-traittypes....* gnu/packages/python-science.scm (python-traittypes): New variable. Ricardo Wurmus
2022-04-07gnu: Add python-trimesh....* gnu/packages/python-science.scm (python-trimesh): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-03-31gnu: Add python-numpy-groupies....* gnu/packages/python-science.scm (python-numpy-groupies): New variable. Ricardo Wurmus
2022-03-18gnu: Add python-scikit-allel....* gnu/packages/python-science.scm (python-scikit-allel): New variable. Efraim Flashner
2022-03-17gnu: python-scipy: Adjust phases....* gnu/packages/python-science.scm (python-scipy)[arguments]: Replace 'check with custom 'check phase. Efraim Flashner
2022-03-03gnu: python-scikit-image: Update to 0.19.2....* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.2. Vinicius Monego
2022-02-19gnu: python-scikit-image: Update to 0.19.1....* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.1. [propagated-inputs]: Add PYTHON-PYTHRAN. [native-inputs]: Remove PYTHON-CODECOV, PYTHON-FLAKE8, PYTHON-PYTEST-COV, and PYTHON-WHEEL. Marius Bakke
2022-02-19gnu: Add python-pythran....* gnu/packages/python-science.scm (python-pythran): New variable. Marius Bakke
2022-01-22gnu: python-upsetplot: Update to 0.6.0....* gnu/packages/python-science.scm (python-upsetplot): Update to 0.6.0. [source](modules, snippet): New fields. [arguments]: Remove obsolete phase. Respect TESTS? in check phase. Marius Bakke
2022-01-22gnu: python-pandas: Remove old version....* gnu/packages/python-science.scm (python-pandas-0.25): Remove variable. (python2-pandas): Inherit from PYTHON-PANDAS. Marius Bakke
2022-01-17Merge branch 'version-1.4.0'...With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm Maxim Cournoyer
2022-01-10gnu: python-pandas: Update to 1.3.5....* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5. [phases]{check}: Add a reference to the network accessing tests issue, now reported upstream. Reinstate the excelwriter tests. [propagated-inputs]: Add python-xlsxwriter. [native-inputs]: Remove python-nose. Maxim Cournoyer
2022-01-12gnu: python-scikit-fuzzy: Disable tests....* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]: Add #:tests?. Remove #:phases. Marius Bakke
2022-01-12gnu: python-modin: Permit newer versions of pandas....* gnu/packages/python-science.scm (python-modin)[arguments]: Add phase. Marius Bakke
2021-12-22gnu: python-scipy: Update to 1.7.3....* gnu/packages/python-science.scm (python-scipy): Update to 1.7.3. [native-inputs]: Add python-pydata-sphinx-theme, python-sphinx-panels. [arguments]: Add phase to build without python-pythran. Remove trailing #t from phases. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme)[native-inputs]: Remove python-plotly. Efraim Flashner
2021-12-22gnu: python-pingouin: Update to 0.5.0....* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0. Arun Isaac
2021-12-21Revert "gnu: python-pingouin: Update to 0.5.0."...This reverts commit f2ad33bc3933b710e5beb6592a9a4925b91b199a. python-pingouin after 0.3.12 needs newer versions of all the python science libraries. Efraim Flashner
2021-12-16gnu: python-pyflow: Rename to python2-pyflow....The package was never compatible with Python 3. Not adding a deprecated package variant, because going from Python 3 to Python 2 is a breaking change and it’s unlikely anyone ever used the package anyway (it was likely broken). * gnu/packages/python-science.scm (python-pyflow): Move… (python2-pyflow): …here. [arguments]: Use Python 2. Lars-Dominik Braun
2021-12-13gnu: python-distributed: Update to 2021.11.2....* gnu/packages/python-science.scm (python-distributed): Update to 2021.11.2. [source](snippet): New field. [arguments]: Add versioneer phase. [native-inputs]: Add PYTHON-VERSIONEER. Marius Bakke
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-09gnu: python2-scipy: Override native inputs....* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override; replace gfortran with gfortran-7; add gcc-7. Ricardo Wurmus
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-15gnu: python-pingouin: Update to 0.5.0....* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0. Arun Isaac
2021-11-15gnu: python-scipy: Run tests conditionally....* gnu/packages/python-science.scm (python-scipy)[arguments]: Respect TESTS? in 'CHECK phase. Ricardo Wurmus
2021-10-25gnu: python-pandas: Update to 1.3.4....* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4. Efraim Flashner
2021-10-25gnu: python-pandas: Fix building with pytest-6....* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom 'check phase adjust to not fail tests with missing test data. Efraim Flashner
2021-10-25gnu: python-pandas: Honor #:tests? flag....* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Efraim Flashner
2021-10-12gnu: python-distributed: Update to 2021.09.1....* gnu/packages/python-science.scm (python-distributed): Update to 2021.09.1. [arguments]: Disable failing test test_text. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2021-10-12gnu: python-pandas: Update to 1.3.3....* gnu/packages/python-science.scm (python-pandas): Update to 1.3.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2021-09-29gnu: python2-pandas: Fix build by reverting inherited fields....* gnu/packages/python-science.scm (python2-pandas)[arguments]: Do not inherit field; revert to values at commit c0d43f62232507b441edf28c3f051921dfb04c2a. [propagated-inputs]: Do not inherit. [inputs]: Same. [native-inputs]: Same. Ricardo Wurmus
2021-07-28gnu: Add python-modin....* gnu/packages/python-science.scm (python-modin): New variable. Ricardo Wurmus
2021-07-28gnu: Add python-distributed....* gnu/packages/python-science.scm (python-distributed): New variable. Ricardo Wurmus
2021-07-28gnu: python-pandas: Update to 1.3.0....* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0. [arguments]: Adjust check phase. Ricardo Wurmus
2021-07-13gnu: Add python-pingouin....* gnu/packages/python-science.scm (python-pingouin): New variable. Arun Isaac
2021-07-13gnu: Add python-pandas-flavor....* gnu/packages/python-science.scm (python-pandas-flavor): New variable. Arun Isaac
2021-06-22gnu: python-numpy, python-scipy: Remove dependency on lapack....The dependency on lapack was unused; the LAPACK interface of OpenBLAS is used instead. The dependency on lapack was added in cba256f8faaa18457fc9b77e8b401f17b89bdd75 (numpy) and 719b01c1575b8599b0dca9f245a9d759032f3168 (scipy). * gnu/packages/python-science.scm (python-scipy)[inputs]: Remove LAPACK. * gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise. Ludovic Courtès
2021-06-14gnu: Add python-ruffus....* gnu/packages/python-science.scm (python-ruffus): New variable. Ricardo Wurmus
2021-06-02gnu: python-vedo: Make pkg-config a native input....* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to... [native-inputs]: ...here. Paul Garlick
2021-06-01gnu: Add python-vedo....* gnu/packages/python-science.scm (python-vedo): New variable. Paul Garlick
2021-05-31gnu: Add python-pyflow....* gnu/packages/python-science.scm (python-pyflow): New variable. Roel Janssen
2021-03-13gnu: python-scikit-image: Enable tests....* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add phases related to tests. [native-inputs]: Add python-codecov, python-flake8, python-pytest, python-pytest-cov, python-pytest-localserver, python-wheel. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego
2021-03-13gnu: python-scikit-image: Update to 0.18.1....* gnu/packages/python-science.scm (python-scikit-image): Update to 0.18.1. [propagated-inputs]: Remove python-six. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego
2021-03-12gnu: Add python-upsetplot....* gnu/packages/python-science.scm (python-upsetplot): New variable. Ricardo Wurmus
2021-03-12gnu: Add python-statannot....* gnu/packages/python-science.scm (python-statannot): New variable. Ricardo Wurmus
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