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2024-01-22gnu: python-tdda: Remove relax-requirements phase....* gnu/packages/python-science.scm (python-tdda)[arguments]<#:phases>: Remove relax-requirements phase. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Troy Figiel
2024-01-21gnu: python-scikit-fem: Update to 9.0.1....* gnu/packages/python-science.scm (python-scikit-fem): Update to 9.0.1. [arguments]<#:test-flags>: Drop it to activate all tests. [native-inputs]: Add python-autograd, python-pyamg, and python-shapely. Change-Id: Ic4706196026bd5756b4db8230b15efacdca7d463 Sharlatan Hellseher
2024-01-21gnu: Add python-pyamg....* gnu/packages/python-science.scm (python-pyamg): New variable. Change-Id: Ibf39fecd14d4e6fd72078b217737e5e5cbbf2321 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Felix Gruber
2024-01-20gnu: python-pandera: Fix build....* gnu/packages/python-science.scm (python-pandera): Fix build. [source]: Delete tests/modin directory. [native-inputs]: Remove python-modin. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Troy Figiel
2024-01-20gnu: python-pandas-stubs: Update to 1.5.3.230321....* gnu/packages/python-science.scm (python-pandas-stubs): Update to 1.5.3.230321. [arguments]<#:test-flags>: Ignore tests that require a version of python-pyarrow with ORC integration. [native-inputs]: Add python-odfpy. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Troy Figiel
2024-01-18gnu: python-plotnine: Reformat with guix style....* gnu/packages/python-science.scm (python-plotnine): Reformat with guix style. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Troy Figiel
2024-01-18gnu: python-plotnine: Fix build....* gnu/packages/python-science.scm (python-plotnine): Fix build. [arguments]<#:test-flags>: Add test_custom_shape to ignored tests. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Troy Figiel
2024-01-17gnu: Add python-pandera....* gnu/packages/python-science.scm (python-pandera): New variable. Troy Figiel
2024-01-17gnu: Add python-pandas-stubs....* gnu/packages/python-science.scm (python-pandas-stubs): New variable. Troy Figiel
2024-01-16gnu: python-deepdish: Fix build....* gnu/packages/python-science.scm (python-deepdish): Fix build. [build-system]: Swap to pyproject-build-system. [arguments]<#:test-flags>: Silent failing tests. Change-Id: I4c4df66fc80434aaf5b95a7a62b83e0c1c02a4c6 Sharlatan Hellseher
2024-01-16gnu: python-xarray: Update to 2023.12.0....* gnu/packages/python-science.scm (python-xarray): Update to 2023.12.0. [arguments]: Ignore one test file. [propagated-inputs]: Add python-packaging. Change-Id: I6b70f59670f7bc8b56787fe3436579db8ac113bb Ricardo Wurmus
2024-01-16gnu: python-pandas: Update to 1.5.3....* gnu/packages/python-science.scm (python-pandas): Update to 1.5.3. [build-system]: Use pyproject-build-system. [arguments]: Use G-expression; move test flags to #:test-flags; add phase 'patch-build-system; fix substitution of "which" executable; remove 'enable-parallel-build; remove custom 'check phase; add 'pre-check phase. [propagated-inputs]: Add python-matplotlib. [native-inputs]: Replace python-cython with python-cython-0.29.35. Change-Id: I9d09971f707b925f469e29be67fe040c181314ff Ricardo Wurmus
2024-01-16gnu: python-scikit-optimize: Make compatible with latest sklearn....* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Add snippet to fix outdated use of "max_features" option. Change-Id: I4272ffc82b4951315b74b4adee27527e8d513fca Ricardo Wurmus
2024-01-16gnu: python-scikit-image: Update to 0.22.0....* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Use G-expression; remove custom 'build phase; simplify 'check phase; enable all tests. [propagated-inputs]: Add python-lazy-loader. [native-inputs]: Add meson-python, python-numpydoc, python-packaging, and python-wheel. Change-Id: I00ede026a7941eae36157106f753a21fb64099c3 Ricardo Wurmus
2024-01-16gnu: python-scipy: Update to 1.11.4....* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4. [arguments]: Use mesonpy backend. [inputs]: Replace pybind11 with pybind11-2.10. [native-inputs]: Add python-click, python-doit, python-pooch, and python-pydevtool; replace python-cython with python-cython-0.29.35. Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5 Ricardo Wurmus
2024-01-10gnu: python-distributed: Disable breaking test....This test times out since the merge of the mesa-updates branch. * gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_tell_workers_when_peers_have_left. Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac Ricardo Wurmus
2023-12-15gnu: python-vaex-core: Add missing input....* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add python-click. Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6 Ricardo Wurmus
2023-12-05gnu: python-pytensor: Update to 2.18.1....* gnu/packages/python-science.scm (python-pytensor): Update to 2.18.1. Change-Id: I7992d8a00c378c008995df3d026c3e05c235ae6d Vinicius Monego
2023-12-05gnu: python-gpy: Adjust for newer python....* gnu/packages/python-science.scm (python-gpy)[source]: Add snippet to adjust python module imports. Change-Id: I0772febb97d75e0a0caa331913c9e7453d11e70d Efraim Flashner
2023-12-04gnu: Add python-pyfma....* gnu/packages/python-science.scm (python-pyfma): New variable. Change-Id: I354d3d56f2799c8c9ac9b868fcacbf88dcc5c25d Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2023-12-04gnu: Add python-meshzoo....* gnu/packages/python-science.scm (python-meshzoo): New variable. Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2023-11-15gnu: Add python-tdda....* gnu/packages/python-science.scm (python-tdda): New variable. Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Troy Figiel
2023-11-03gnu: python-pytensor: Update to 2.17.3....* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3. Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45 Vinicius Monego
2023-11-03gnu: Add python-salib....* gnu/packages/python-science.scm (python-salib): New variable. Vinicius Monego
2023-10-17gnu: python-trimesh: Update to 3.23.5....* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-17gnu: python-pyvista: Update to 0.42.3....* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-08gnu: python-distributed: Disable failing tests....* gnu/packages/python-science.scm (python-distributed): Disable failing tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nicolas Graves
2023-09-30gnu: Add python-numpoly....* gnu/packages/python-science.scm (python-numpoly): New variable. Vinicius Monego
2023-08-05gnu: python-pytensor: Update to 2.14.2....* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2. [native-inputs]: Add python-pytest-mock. Vinicius Monego
2023-07-29gnu: Add python-scikit-fem....* gnu/packages/python-science.scm (python-scikit-fem): New variable. Vinicius Monego
2023-07-15gnu: python-distributed: Update to 2023.7.0....* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0. Ricardo Wurmus
2023-07-13gnu: Add python-plotnine....* gnu/packages/python-science.scm (python-plotnine): New variable. Ricardo Wurmus
2023-06-29gnu: python-pandas-flavor: Update to 0.5.0....* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0. [propagated-inputs]: Add python-lazy-loader and python-packaging. [home-page]: Update. Arun Isaac
2023-06-29gnu: python-distributed: Disable timeout test....* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_nanny_timeout, because it times out. Ricardo Wurmus
2023-06-25gnu: python-trimesh: Update to 3.22.1....* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1. [arguments]<#:phases>: Update path in 'fix-build' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2023-06-25gnu: Add python-pytensor....* gnu/packages/python-science.scm (python-pytensor): New variable. Vinicius Monego
2023-06-25gnu: Add python-xarray-einstats....* gnu/packages/python-science.scm (python-xarray-einstats): New variable. Vinicius Monego
2023-06-25gnu: python-xarray: Update to 2023.6.0....* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0. [build-system]: Switch to pyproject-build-system. [arguments]: Do not override the check phase. Vinicius Monego
2023-06-25gnu: Add python-einops....* gnu/packages/python-science.scm (python-einops): New variable. Vinicius Monego
2023-06-20gnu: python-pyvista: Update to 0.39.1....* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1. [propagated-inputs]: Add python-pooch, remove python-appdirs. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-05-11gnu: python-distributed: Update to 2023.4.1....* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1. [source]: Remove snippet. [arguments]: Update build phase 'versioneer; restore 'sanity-check phase; simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-importlib-metadata. Ricardo Wurmus
2023-05-10gnu: python-scikit-optimize: Fix build with newer numpy and sklearn....* gnu/packages/patches/python-scikit-optimize-1148.patch, gnu/packages/patches/python-scikit-optimize-1150.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with git and apply patches. Ricardo Wurmus
2023-05-08gnu: python-bottleneck: Honor #:tests? flag....* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Efraim Flashner
2023-05-08gnu: python-bottleneck: Update to 1.3.7....* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7. Efraim Flashner
2023-04-26gnu: python-distributed: Fix build....* gnu/packages/python-science.scm (python-distributed)[build-system]: Use pyproject-build-system. [arguments]: Hide deprecation warnings from tornado, because they break almost all tests; disable three more tests. Ricardo Wurmus
2023-04-14Merge branch 'master' into core-updates....Conflicts: gnu/local.mk gnu/packages/build-tools.scm gnu/packages/certs.scm gnu/packages/check.scm gnu/packages/compression.scm gnu/packages/cups.scm gnu/packages/fontutils.scm gnu/packages/gnuzilla.scm gnu/packages/guile.scm gnu/packages/ibus.scm gnu/packages/image-processing.scm gnu/packages/linux.scm gnu/packages/music.scm gnu/packages/nss.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/qt.scm gnu/packages/ruby.scm gnu/packages/shells.scm gnu/packages/tex.scm gnu/packages/video.scm gnu/packages/vulkan.scm gnu/packages/web.scm gnu/packages/webkit.scm gnu/packages/wm.scm Maxim Cournoyer
2023-04-11gnu: python-scipy: Update to 1.10.1....* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1. [build-system]: Use pyproject-build-system. [arguments]: Add #:build-backend argument. Remove loosen-requirements, build and install phases. [native-inputs]: Remove python-pypa-build. Maxim Cournoyer
2023-03-24gnu: python-scikit-allel: Use pyproject-build-system....* gnu/packages/python-science.scm (python-scikit-allel): Move up to create alphabetic order. [build-system]: Use pyproject-build-system. [arguments]: Provide test flags instead of overriding 'check phase; split out build step into new 'build-ext phase. Disable roh_mhmm tests. Ricardo Wurmus
2023-03-24gnu: Add python-scikit-optimize....* gnu/packages/python-science.scm (python-scikit-optimize): New variable. Ricardo Wurmus
2023-03-21gnu: Add python-libneuroml....* gnu/packages/python-science.scm (python-libneuroml): New variable. Lars-Dominik Braun
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