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2023-10-17gnu: python-trimesh: Update to 3.23.5....* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-17gnu: python-pyvista: Update to 0.42.3....* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-08gnu: python-distributed: Disable failing tests....* gnu/packages/python-science.scm (python-distributed): Disable failing tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nicolas Graves
2023-09-30gnu: Add python-numpoly....* gnu/packages/python-science.scm (python-numpoly): New variable. Vinicius Monego
2023-08-05gnu: python-pytensor: Update to 2.14.2....* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2. [native-inputs]: Add python-pytest-mock. Vinicius Monego
2023-07-29gnu: Add python-scikit-fem....* gnu/packages/python-science.scm (python-scikit-fem): New variable. Vinicius Monego
2023-07-15gnu: python-distributed: Update to 2023.7.0....* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0. Ricardo Wurmus
2023-07-13gnu: Add python-plotnine....* gnu/packages/python-science.scm (python-plotnine): New variable. Ricardo Wurmus
2023-06-29gnu: python-pandas-flavor: Update to 0.5.0....* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0. [propagated-inputs]: Add python-lazy-loader and python-packaging. [home-page]: Update. Arun Isaac
2023-06-29gnu: python-distributed: Disable timeout test....* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_nanny_timeout, because it times out. Ricardo Wurmus
2023-06-25gnu: python-trimesh: Update to 3.22.1....* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1. [arguments]<#:phases>: Update path in 'fix-build' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2023-06-25gnu: Add python-pytensor....* gnu/packages/python-science.scm (python-pytensor): New variable. Vinicius Monego
2023-06-25gnu: Add python-xarray-einstats....* gnu/packages/python-science.scm (python-xarray-einstats): New variable. Vinicius Monego
2023-06-25gnu: python-xarray: Update to 2023.6.0....* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0. [build-system]: Switch to pyproject-build-system. [arguments]: Do not override the check phase. Vinicius Monego
2023-06-25gnu: Add python-einops....* gnu/packages/python-science.scm (python-einops): New variable. Vinicius Monego
2023-06-20gnu: python-pyvista: Update to 0.39.1....* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1. [propagated-inputs]: Add python-pooch, remove python-appdirs. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-05-11gnu: python-distributed: Update to 2023.4.1....* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1. [source]: Remove snippet. [arguments]: Update build phase 'versioneer; restore 'sanity-check phase; simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-importlib-metadata. Ricardo Wurmus
2023-05-10gnu: python-scikit-optimize: Fix build with newer numpy and sklearn....* gnu/packages/patches/python-scikit-optimize-1148.patch, gnu/packages/patches/python-scikit-optimize-1150.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with git and apply patches. Ricardo Wurmus
2023-05-08gnu: python-bottleneck: Honor #:tests? flag....* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Efraim Flashner
2023-05-08gnu: python-bottleneck: Update to 1.3.7....* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7. Efraim Flashner
2023-04-26gnu: python-distributed: Fix build....* gnu/packages/python-science.scm (python-distributed)[build-system]: Use pyproject-build-system. [arguments]: Hide deprecation warnings from tornado, because they break almost all tests; disable three more tests. Ricardo Wurmus
2023-04-14Merge branch 'master' into core-updates....Conflicts: gnu/local.mk gnu/packages/build-tools.scm gnu/packages/certs.scm gnu/packages/check.scm gnu/packages/compression.scm gnu/packages/cups.scm gnu/packages/fontutils.scm gnu/packages/gnuzilla.scm gnu/packages/guile.scm gnu/packages/ibus.scm gnu/packages/image-processing.scm gnu/packages/linux.scm gnu/packages/music.scm gnu/packages/nss.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/qt.scm gnu/packages/ruby.scm gnu/packages/shells.scm gnu/packages/tex.scm gnu/packages/video.scm gnu/packages/vulkan.scm gnu/packages/web.scm gnu/packages/webkit.scm gnu/packages/wm.scm Maxim Cournoyer
2023-04-11gnu: python-scipy: Update to 1.10.1....* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1. [build-system]: Use pyproject-build-system. [arguments]: Add #:build-backend argument. Remove loosen-requirements, build and install phases. [native-inputs]: Remove python-pypa-build. Maxim Cournoyer
2023-03-24gnu: python-scikit-allel: Use pyproject-build-system....* gnu/packages/python-science.scm (python-scikit-allel): Move up to create alphabetic order. [build-system]: Use pyproject-build-system. [arguments]: Provide test flags instead of overriding 'check phase; split out build step into new 'build-ext phase. Disable roh_mhmm tests. Ricardo Wurmus
2023-03-24gnu: Add python-scikit-optimize....* gnu/packages/python-science.scm (python-scikit-optimize): New variable. Ricardo Wurmus
2023-03-21gnu: Add python-libneuroml....* gnu/packages/python-science.scm (python-libneuroml): New variable. Lars-Dominik Braun
2023-03-21gnu: Add python-pylems....* gnu/packages/python-science.scm (python-pylems): New variable. Lars-Dominik Braun
2023-01-08gnu: Add python-pydicom....* gnu/packages/python-science.scm (python-pydicom): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Antero Mejr
2022-12-05gnu: python-sgp4: Move to astronomy....* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm. [description]: Expand description, annotate acronyms, add link to CelesTrak. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-12-05gnu: python-sgp4: Update to 2.21....The latest version passes build on aarch64-linux system. * gnu/packages/python-science.scm (python-sgp4): Update to 2.21. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-12-02gnu: python-msgpack-numpy: Update to 0.4.8....* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8. Navid Afkhami
2022-11-11gnu: Add python-tspex....* gnu/packages/python-science.scm (python-tspex): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami
2022-11-04gnu: Add python-pyts....* gnu/packages/python-science.scm (python-pyts): New variable. Ricardo Wurmus
2022-10-18gnu: Add python-simple-pid....* gnu/packages/python-science.scm (python-simple-pid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart
2022-09-29Merge branch 'master' into stagingMarius Bakke
2022-09-28gnu: Add python-simplespectral....* gnu/packages/python-science.scm (python-simplespectral): New variable. Guillaume Le Vaillant
2022-09-27Merge branch 'master' into staging....With resolved conflicts in: gnu/local.mk gnu/packages/crates-io.scm Maxim Cournoyer
2022-09-25gnu: Add python-vaex-core....* gnu/packages/python-science.scm (python-vaex-core): New variable. Ricardo Wurmus
2022-09-18gnu: python-cython: Remove duplicate version....* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable. * gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON. Marius Bakke
2022-09-18gnu: python-pandas: Update to 1.4.4....* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4. [native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32. Marius Bakke
2022-09-16gnu: python-scipy: Update to 1.9.1....* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1. [source]: Switch to GIT-FETCH. [outputs]: Remove. [arguments]: Don't disable Pythran. Don't configure OpenBLAS which is now discovered by pkg-config. Do a "manual" PEP 517 style build. Make install-doc phase conditional on the presence of Sphinx. Simplify tests. [propagated-inputs]: Add PYTHON-PYTHRAN. [native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC, PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS. Add GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON. Marius Bakke
2022-09-14gnu: python-pingouin: Don't pin scikit-learn version....* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase. Marius Bakke
2022-09-11gnu: python-pingouin: Update to 0.5.2....* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.2. [arguments]: Adjust outdated substitution. Marius Bakke
2022-09-10gnu: Add comments to the bottom of a few package modules....This will hopefully discourage patches which add new packages to the bottom of files, as this increases the likelihood of conflicts when applying patches. If there are more specific ways that packages should be arranged in specific modules, this message can be updated accordingly. * gnu/packages/bioconductor.scm: Add comment discouraging adding packages to the bottom of the file. * gnu/packages/bioinformatics.scm: ditto. * gnu/packages/cran.scm: ditto. * gnu/packages/crates-io.scm: ditto. * gnu/packages/emacs-xyz.scm: ditto. * gnu/packages/golang.scm: ditto. * gnu/packages/guile-xyz.scm: ditto. * gnu/packages/haskell-xyz.scm: ditto. * gnu/packages/java.scm: ditto. * gnu/packages/julia-xyz.scm: ditto. * gnu/packages/lisp-xyz.scm: ditto. * gnu/packages/ocaml.scm: ditto. * gnu/packages/perl.scm: ditto. * gnu/packages/python-science.scm: ditto. * gnu/packages/python-xyz.scm: ditto. * gnu/packages/ruby.scm: ditto. * gnu/packages/tex.scm: ditto. Christopher Baines
2022-09-07gnu: python-pyvista: Update to 0.36.1....* gnu/packages/python-science.scm (python-pyvista): Update to 0.36.1. Signed-off-by: Marius Bakke <marius@gnu.org> Paul A. Patience
2022-08-02gnu: python-pyvista: Update to 0.35.2....* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Paul A. Patience
2022-08-02gnu: Add python-geosketch....* gnu/packages/python-science.scm (python-geosketch): New variable. Ricardo Wurmus
2022-08-02gnu: Add python-fbpca....* gnu/packages/python-science.scm (python-fbpca): New variable. Ricardo Wurmus
2022-07-15gnu: python-pyvista: Update to 0.35.1....* gnu/packages/python-science (python-pyvista): Update to 0.35.1. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2022-07-08gnu: Add python-opt-einsum....* gnu/packages/python-science.scm (python-opt-einsum): New variable. Ricardo Wurmus
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